Ss1.1-Lng1-LNG010022A04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTGTTCTTAACGTTTGGTTTCCGGTTTCCAGGTTAGCGTTTTGTCAGGGTTTGTTGGG GGTGTGCCTGTGGCCTAGGCGGAATCCAACAGGTGGACCATGTCGGCCTTTGAGAAGCCT CAGATCATCGCCCATATACAGAAGAGCCTCAACTACACGGTATTCGACTGTAAGTGGGTG CCCTGCAGCGCCAAGTTTGTGACCATGGGCAACTTCGCGCGGGGCACCGGCGTCATTCAG CTGTACGAGATCCAGCACGGGGACCTAAAGCTGCTTCGGGAGATTGAAAAGGCCAAACCC ATTAAATGTGGAACATTTGGTGCAACATCTTTACAGCAGAGATATTTAGCTACTGGGGAT TTTGCTGGAAACCTTCATATATGGAACTTGGAAGCTCCAGATATCCCAGTATATTCTGTA AAGGCTCATAAGGAAATTATAAATACCATAGATGGTGTCGGTGGACTAGGCATCGGGGAA GGGGCACCTGAAATTGTCACTGGCAGCCGAGATGGAACCGTGAAGGTGTGGGACCCAAGG CAGAAAGATGACCCCGTTGCTAATATGGAACCTGTACAAGGAGAAAACAAGAGAGACTGC TGGACCGTGGCATTTGGCAATGCATATAATCAAGAGGAACGTGTCGTTTGTGCTGGTTAT GACAACGGAGATATCAAACTATTTGATCTCAGAAATATGTCATTACGGTGGGAGACAAAT ATAAAAAACGGGGTATGTAGCTTGGAGTTTGACAGAAAAGACATAAGTATGAATAAATTA GTAGCTACATCTCTGGAAGGAAAGTTTCATGTTTTTGACATGAGAACACAGCATCCAACC AAAGGTTTTGCTTCCGTTTCAGAAAAGGCTCATAAATCTACTGTGTGGCAGGTCCGGCAC CTGCCGCAGAACAGAGAGCTCTTCCTGACAGCTGGAGGCGCTGGCGGCCTGCACCTCTGG AAGTACGAATACCCAATTCAGCGGTCCAAGAAAGATTCCGAGGGTGTAGAGATGGGAGTC GCGGGTTCGGTCAGCCTCCTGCAGAATGTCACGTTGTCTACCCAGCCCATTTCCAGTTTG GACTGGAGTCCAGATAAGAGGGGTCTCTGCCTCTGTAGTTCATTTGATCAAATGGTAAGA GTACTGATCGTTACCAAACTCCATAAAATTTGATCTGAAGACTTTGGACACGAAACCTCC AGAGGAACCCTCAGAATTTAGAATCTGTTCTGGGATCCTTTGACCCTTGAAGAAAGTTGG ATTTGACCAAAAAAGGCCCCAGGCCAGCCTCTCTCGGGGTGTGAACTGAGCAGTGCCCGG CGGCCTGACTGGACACTGGTTTGCTATTGCACAGGAGGCCACCACAGGCCCCAGCACCGC TCTGTTCCTCTCCCCTTTGTTTCTGATAAAATGTCAAAACTTTTCTCTATTGAGACATTT GAAATTGGCTCTGCATCCACAAAGTTCCATATTTTATAACAGTGCTATGGTAGTGACTTA ATTTGGTTTAAAATAGTATGCCTTGTTGTTCCCTAGTGGCTCAGCGAGTTAAGGATACAG CTTTGTCATGCAGGGCCTCAGGTTTCTACTTTGGTGTGGGTTCAGTCCCTGGCCTGGGAA TTTACACATGCTTCGTTTGGGCCCAGCCAAAAAAAAAAAAAAAAAATTACAATAGTTTAC CTTGGTAAAATGACTGAATTAACCTTCATAAATAAATATACTTTGAGGCATTTCAGTGTC AGTAAATTTCTATAAAGATTACTACTTTATAAAATACCAAAATGGTATTATGGTCAACCT AGATTTAGGTCACTATTTCAGCAGTGTAATTCTTAAAATGAAATATGTGAAATACCATGA TTTACAAAGACCTCTTTTTTTTAAGTTAAAAAACAGAAGTCAAATTCCTGAGACTTCAGT TATTGGCTGTGGTAAGTGATGGTGAAATGTATAAGACTGTGGGGCTTTTGTCGCCTTGTT TTTGTCAATCTTTTTAATATATTTTGTGAATAAATTTTGTTTGTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTGTTCTTAACGTTTGGTTTCCGGTTTCCAGGTTAGCGTTTTGTCAGGGTTTGTTGGG GGTGTGCCTGTGGCCTAGGCGGAATCCAACAGGTGGACCATGTCGGCCTTTGAGAAGCCT CAGATCATCGCCCATATACAGAAGAGCCTCAACTACACGGTATTCGACTGTAAGTGGGTG CCCTGCAGCGCCAAGTTTGTGACCATGGGCAACTTCGCGCGGGGCACCGGCGTCATTCAG CTGTACGAGATCCAGCACGGGGACCTAAAGCTGCTTCGGGAGATTGAAAAGGCCAAACCC ATTAAATGTGGAACATTTGGTGCAACATCTTTACAGCAGAGATATTTAGCTACTGGGGAT TTTGCTGGAAACCTTCATATATGGAACTTGGAAGCTCCAGATATCCCAGTATATTCTGTA AAGGCTCATAAGGAAATTATAAATACCATAGATGGTGTCGGTGGACTAGGCATCGGGGAA GGGGCACCTGAAATTGTCACTGGCAGCCGAGATGGAACCGTGAAGGTGTGGGACCCAAGG CAGAAAGATGACCCCGTTGCTAATATGGAACCTGTACAAGGAGAAAACAAGAGAGACTGC TGGACCGTGGCATTTGGCAATGCATATAATCAAGAGGAACGTGTCGTTTGTGCTGGTTAT GACAACGGAGATATCAAACTATTTGATCTCAGAAATATGTCATTACGGTGGGAGACAAAT ATAAAAAACGGGGTATGTAGCTTGGAGTTTGACAGAAAAGACATAAGTATGAATAAATTA GTAGCTACATCTCTGGAAGGAAAGTTTCATGTTTTTGACATGAGAACACAGCATCCAACC AAAGGTTTTGCTTCCGTTTCAGAAAAGGCTCATAAATCTACTGTGTGGCAGGTCCGGCAC CTGCCGCAGAACAGAGAGCTCTTCCTGACAGCTGGAGGCGCTGGCGGCCTGCACCTCTGG AAGTACGAATACCCAATTCAGCGGTCCAAGAAAGATTCCGAGGGTGTAGAGATGGGAGTC GCGGGTTCGGTCAGCCTCCTGCAGAATGTCACGTTGTCTACCCAGCCCATTTCCAGTTTG GACTGGAGTCCAGATAAGAGGGGTCTCTGCCTCTGTAGTTCATTTGATCAAATGGTAAGA GTACTGATCGTTACCAAACTCCATAAAATTTGATCTGAAGACTTTGGACACGAAACCTCC AGAGGAACCCTCAGAATTTAGAATCTGTTCTGGGATCCTTTGACCCTTGAAGAAAGTTGG ATTTGACCAAAAAAGGCCCCAGGCCAGCCTCTCTCGGGGTGTGAACTGAGCAGTGCCCGG CGGCCTGACTGGACACTGGTTTGCTATTGCACAGGAGGCCACCACAGGCCCCAGCACCGC TCTGTTCCTCTCCCCTTTGTTTCTGATAAAATGTCAAAACTTTTCTCTATTGAGACATTT GAAATTGGCTCTGCATCCACAAAGTTCCATATTTTATAACAGTGCTATGGTAGTGACTTA ATTTGGTTTAAAATAGTATGCCTTGTTGTTCCCTAGTGGCTCAGCGAGTTAAGGATACAG CTTTGTCATGCAGGGCCTCAGGTTTCTACTTTGGTGTGGGTTCAGTCCCTGGCCTGGGAA TTTACACATGCTTCGTTTGGGCCCAGCCAAAAAAAAAAAAAAAAAATTACAATAGTTTAC CTTGGTAAAATGACTGAATTAACCTTCATAAATAAATATACTTTGAGGCATTTCAGTGTC AGTAAATTTCTATAAAGATTACTACTTTATAAAATACCAAAATGGTATTATGGTCAACCT AGATTTAGGTCACTATTTCAGCAGTGTAATTCTTAAAATGAAATATGTGAAATACCATGA TTTACAAAGACCTCTTTTTTTTAAGTTAAAAAACAGAAGTCAAATTCCTGAGACTTCAGT TATTGGCTGTGGTAAGTGATGGTGAAATGTATAAGACTGTGGGGCTTTTGTCGCCTTGTT TTTGTCAATCTTTTTAATATATTTTGTGAATAAATTTTGTTTGTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 732-850, + strand, RNAz p=0.759673 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 732-850, + strand, RNAz p=0.759673 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-282, gnl|bosTau2|chr11 (48110738-48110458) | |
| 1-282, gnl|canFam2|chr10 (70383805-70383996) | |
| 1-282, gnl|danRer3|chr14 (22508874-22508684) | |
| 1-282, gnl|dasNov1|scaffold_123922 (1395-1582) | |
| 1-282, gnl|echTel1|scaffold_315979 (46678-46491) | |
| 1-282, gnl|fr1|chrUn (99142226-99142406) | |
| 1-282, gnl|galGal2|chr3 (5949190-5948997) | |
| 1-282, gnl|hg17|chr2 (68296043-68296230) | |
| 1-282, gnl|Hg17|chr2 (68296314-68296044) | |
| 1-282, gnl|loxAfr1|scaffold_76948 (5505-5318) | |
| 1-282, gnl|mm7|chr11 (17164158-17163971) | |
| 1-282, gnl|Mm7|chr11 (17163913-17164155) | |
| 1-282, gnl|monDom2|scaffold_1 (34706614-34706801) | |
| 1-282, gnl|oryCun1|scaffold_97915 (15505-15692) | |
| 1-282, gnl|panTro1|chr12 (70542959-70543146) | |
| 1-282, gnl|rheMac2|chr13 (68424518-68424705) | |
| 1-282, gnl|rn3|chr14 (98130730-98130543) | |
| 1-282, gnl|tetNig1|chr17 (10234665-10234834) | |
| 1-282, gnl|xenTro1|scaffold_112 (1172760-1172950) | |
| 383-515, gnl|bosTau2|chr11 (48094757-48094625) | |
| 383-515, gnl|canFam2|chr10 (70374737-70374905) | |
| 383-515, gnl|dasNov1|scaffold_65586 (9578-9746) | |
| 383-515, gnl|echTel1|scaffold_282254 (7408-7240) | |
| 383-515, gnl|fr1|chrUn (99141523-99141699) | |
| 383-515, gnl|galGal2|chr3 (5949714-5949547) | |
| 383-515, gnl|hg17|chr2 (68283352-68283519) | |
| 383-515, gnl|Hg17|chr2 (68283499-68283367) | |
| 383-515, gnl|loxAfr1|scaffold_16893 (39718-39550) | |
| 383-515, gnl|mm7|chr11 (17174350-17174185) | |
| 383-515, gnl|Mm7|chr11 (17174205-17174337) | |
| 383-515, gnl|monDom2|scaffold_1 (34689192-34689360) | |
| 383-515, gnl|oryCun1|scaffold_134112 (565-406) | |
| 383-515, gnl|panTro1|chr12 (70530242-70530409) | |
| 383-515, gnl|rheMac2|chr13 (68412436-68412603) | |
| 383-515, gnl|rn3|chr14 (98139002-98138839) | |
| 383-515, gnl|tetNig1|chr17 (10233946-10234097) | |
| 383-515, gnl|xenTro1|scaffold_112 (1167391-1167548) | |
| 732-868, gnl|bosTau2|chr11 (48089060-48088924) | |
| 732-868, gnl|canFam2|chr10 (70369066-70369257) | |
| 732-868, gnl|danRer3|chr14 (22515259-22515101) | |
| 732-868, gnl|dasNov1|scaffold_65586 (3573-3768) | |
| 732-868, gnl|echTel1|scaffold_201574 (5130-4930) | |
| 732-868, gnl|fr1|chrUn (99140370-99140530) | |
| 732-868, gnl|galGal2|chr3 (5951756-5951605) | |
| 732-868, gnl|hg17|chr2 (68276068-68276263) | |
| 732-868, gnl|Hg17|chr2 (68276217-68276081) | |
| 732-868, gnl|loxAfr1|scaffold_16893 (52357-52168) | |
| 732-868, gnl|mm7|chr11 (17180300-17180121) | |
| 732-868, gnl|Mm7|chr11 (17180149-17180285) | |
| 732-868, gnl|monDom2|scaffold_1 (34676061-34676259) | |
| 732-868, gnl|oryCun1|scaffold_206222 (46139-46334) | |
| 732-868, gnl|panTro1|chr12 (70522824-70523019) | |
| 732-868, gnl|rheMac2|chr13 (68404865-68405061) | |
| 732-868, gnl|rn3|chr14 (98144511-98144343) | |
| 732-868, gnl|tetNig1|chr17 (10233055-10233203) | |
| 732-868, gnl|xenTro1|scaffold_112 (1164851-1164994) | |
| 966-1479, gnl|bosTau2|chr11 (48082621-48082087) | |
| 966-1479, gnl|Hg17|chr2 (68270228-68269386) | |
| 966-1479, gnl|Mm7|chr11 (17184716-17185171) | |
| 1667-2027, gnl|bosTau2|chr11 (48082030-48081679) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-282, gnl|bosTau2|chr11 (48110738-48110458) | |
| 1-282, gnl|canFam2|chr10 (70383805-70383996) | |
| 1-282, gnl|danRer3|chr14 (22508874-22508684) | |
| 1-282, gnl|dasNov1|scaffold_123922 (1395-1582) | |
| 1-282, gnl|echTel1|scaffold_315979 (46678-46491) | |
| 1-282, gnl|fr1|chrUn (99142226-99142406) | |
| 1-282, gnl|galGal2|chr3 (5949190-5948997) | |
| 1-282, gnl|hg17|chr2 (68296043-68296230) | |
| 1-282, gnl|Hg17|chr2 (68296314-68296044) | |
| 1-282, gnl|loxAfr1|scaffold_76948 (5505-5318) | |
| 1-282, gnl|mm7|chr11 (17164158-17163971) | |
| 1-282, gnl|Mm7|chr11 (17163913-17164155) | |
| 1-282, gnl|monDom2|scaffold_1 (34706614-34706801) | |
| 1-282, gnl|oryCun1|scaffold_97915 (15505-15692) | |
| 1-282, gnl|panTro1|chr12 (70542959-70543146) | |
| 1-282, gnl|rheMac2|chr13 (68424518-68424705) | |
| 1-282, gnl|rn3|chr14 (98130730-98130543) | |
| 1-282, gnl|tetNig1|chr17 (10234665-10234834) | |
| 1-282, gnl|xenTro1|scaffold_112 (1172760-1172950) | |
| 383-515, gnl|bosTau2|chr11 (48094757-48094625) | |
| 383-515, gnl|canFam2|chr10 (70374737-70374905) | |
| 383-515, gnl|dasNov1|scaffold_65586 (9578-9746) | |
| 383-515, gnl|echTel1|scaffold_282254 (7408-7240) | |
| 383-515, gnl|fr1|chrUn (99141523-99141699) | |
| 383-515, gnl|galGal2|chr3 (5949714-5949547) | |
| 383-515, gnl|hg17|chr2 (68283352-68283519) | |
| 383-515, gnl|Hg17|chr2 (68283499-68283367) | |
| 383-515, gnl|loxAfr1|scaffold_16893 (39718-39550) | |
| 383-515, gnl|mm7|chr11 (17174350-17174185) | |
| 383-515, gnl|Mm7|chr11 (17174205-17174337) | |
| 383-515, gnl|monDom2|scaffold_1 (34689192-34689360) | |
| 383-515, gnl|oryCun1|scaffold_134112 (565-406) | |
| 383-515, gnl|panTro1|chr12 (70530242-70530409) | |
| 383-515, gnl|rheMac2|chr13 (68412436-68412603) | |
| 383-515, gnl|rn3|chr14 (98139002-98138839) | |
| 383-515, gnl|tetNig1|chr17 (10233946-10234097) | |
| 383-515, gnl|xenTro1|scaffold_112 (1167391-1167548) | |
| 732-868, gnl|bosTau2|chr11 (48089060-48088924) | |
| 732-868, gnl|canFam2|chr10 (70369066-70369257) | |
| 732-868, gnl|danRer3|chr14 (22515259-22515101) | |
| 732-868, gnl|dasNov1|scaffold_65586 (3573-3768) | |
| 732-868, gnl|echTel1|scaffold_201574 (5130-4930) | |
| 732-868, gnl|fr1|chrUn (99140370-99140530) | |
| 732-868, gnl|galGal2|chr3 (5951756-5951605) | |
| 732-868, gnl|hg17|chr2 (68276068-68276263) | |
| 732-868, gnl|Hg17|chr2 (68276217-68276081) | |
| 732-868, gnl|loxAfr1|scaffold_16893 (52357-52168) | |
| 732-868, gnl|mm7|chr11 (17180300-17180121) | |
| 732-868, gnl|Mm7|chr11 (17180149-17180285) | |
| 732-868, gnl|monDom2|scaffold_1 (34676061-34676259) | |
| 732-868, gnl|oryCun1|scaffold_206222 (46139-46334) | |
| 732-868, gnl|panTro1|chr12 (70522824-70523019) | |
| 732-868, gnl|rheMac2|chr13 (68404865-68405061) | |
| 732-868, gnl|rn3|chr14 (98144511-98144343) | |
| 732-868, gnl|tetNig1|chr17 (10233055-10233203) | |
| 732-868, gnl|xenTro1|scaffold_112 (1164851-1164994) | |
| 966-1479, gnl|bosTau2|chr11 (48082621-48082087) | |
| 966-1479, gnl|Hg17|chr2 (68270228-68269386) | |
| 966-1479, gnl|Mm7|chr11 (17184716-17185171) | |
| 1667-2027, gnl|bosTau2|chr11 (48082030-48081679) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| vin (0.332557) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cut (0.169924) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cut (0.169924) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| spc (0.113366) | |
| ldo (0.0970026) |