Ss1.1-Lng1-LNG010022G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGCATTCTCTTTGCTTGTATTGCTGTCCATCCTGACCCACCATAGCTCTACCGACCC TCATCGAGGCATCTAAGGAGAAAATGACCATACTTGGGGTCCCAGTCCTGGGATTTGTCA TCACCATCTTGAACCTTCAGAAATCATGGGCTATCGTAGAGAATCACGTGATCATCCAGG CTGAGTTCTATCTGAGCCCTGACAAATCTGGCGAGTTTATGTTTGACTTTGACGGTGATG AGATTTTCCACGTGGATATGGAAAAGAGGGAGACGGTCTGGCGACTTGAAGAATTTGGAC ATTTTGCCAGCTTTGAGGCTCAGGGTGCACTGGCCAACATAGCTGTGGACAAAGCCAACC TGGAAATCATGATCAAGCGCTCCAACAACACCCCGAACACCAATGTACCTCCAGAAGTGA CTGTGCTCTCAGACAAGCCTGTTGAACTGGGAGAGCCCAACATCCTCATCTGTTTCATCG ACAAGTTCTCCCCGCCAGTGGTCAATGTCACCTGGCTTCGAAATGGCTCCCCTGTCACCA GAGGAGTGTCAGAGACAGTCTTCCTGCCCCGGGAGGACCACCTTTTCCGCAAGTTCCACT ATCTCCCCTTCATGCCCTCAACCGAGGATGTCTATGACTGCCAGGTGGAGCACTGGGGTT TGGACAAGCCTCTTCTCAAGCACTGGGAGTTTGAAGCTCAAACCCCCCTCCCAGAGACTA CAGAGAACACCGTGTGTGCTCTGGGCCTGATTGTGGCTCTGGTGGGCATCATCGTCGGGA CCGTCCTCATCATCAAGGGTGTGCGCAAAGGCAACGCCACTGAACGCCGAGGGCCTCTGT GAGGTGCTTGCAGGGAATGGACTTTGTTAAAGATCAATGAAGATATTTCCTCTTGAACAG CTTTACAAACCCAGCGATACTCCAGCTGTTCACCTCCGTGAAGACAACTCTCCTTCAGCA CTTTCCAGCCCTGAAGCCACTCTAAGTGTTGATGCCTTCTTTAATCTTCAAATTCTAACA TCTGGTTATTCCCTGTTTGTTACCCCTTCTTGTGCTGGCTTTCCCTCCATTTCCACAGCC TTTTTATTATCACCGTGTAATGCCTTTGGAAGAGATCCCATAGGATCCTTTCTCTGCTAT GAAACCTTTCGAATGTTCTATGGAGGCATCTACTGTATACTTATTACTTGGAGTTTCTTC CAACTGTGATTGTGATTTTTCTGAATACAATAAACTTTGAGTGGGCCTTAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGCATTCTCTTTGCTTGTATTGCTGTCCATCCTGACCCACCATAGCTCTACCGACCC TCATCGAGGCATCTAAGGAGAAAATGACCATACTTGGGGTCCCAGTCCTGGGATTTGTCA TCACCATCTTGAACCTTCAGAAATCATGGGCTATCGTAGAGAATCACGTGATCATCCAGG CTGAGTTCTATCTGAGCCCTGACAAATCTGGCGAGTTTATGTTTGACTTTGACGGTGATG AGATTTTCCACGTGGATATGGAAAAGAGGGAGACGGTCTGGCGACTTGAAGAATTTGGAC ATTTTGCCAGCTTTGAGGCTCAGGGTGCACTGGCCAACATAGCTGTGGACAAAGCCAACC TGGAAATCATGATCAAGCGCTCCAACAACACCCCGAACACCAATGTACCTCCAGAAGTGA CTGTGCTCTCAGACAAGCCTGTTGAACTGGGAGAGCCCAACATCCTCATCTGTTTCATCG ACAAGTTCTCCCCGCCAGTGGTCAATGTCACCTGGCTTCGAAATGGCTCCCCTGTCACCA GAGGAGTGTCAGAGACAGTCTTCCTGCCCCGGGAGGACCACCTTTTCCGCAAGTTCCACT ATCTCCCCTTCATGCCCTCAACCGAGGATGTCTATGACTGCCAGGTGGAGCACTGGGGTT TGGACAAGCCTCTTCTCAAGCACTGGGAGTTTGAAGCTCAAACCCCCCTCCCAGAGACTA CAGAGAACACCGTGTGTGCTCTGGGCCTGATTGTGGCTCTGGTGGGCATCATCGTCGGGA CCGTCCTCATCATCAAGGGTGTGCGCAAAGGCAACGCCACTGAACGCCGAGGGCCTCTGT GAGGTGCTTGCAGGGAATGGACTTTGTTAAAGATCAATGAAGATATTTCCTCTTGAACAG CTTTACAAACCCAGCGATACTCCAGCTGTTCACCTCCGTGAAGACAACTCTCCTTCAGCA CTTTCCAGCCCTGAAGCCACTCTAAGTGTTGATGCCTTCTTTAATCTTCAAATTCTAACA TCTGGTTATTCCCTGTTTGTTACCCCTTCTTGTGCTGGCTTTCCCTCCATTTCCACAGCC TTTTTATTATCACCGTGTAATGCCTTTGGAAGAGATCCCATAGGATCCTTTCTCTGCTAT GAAACCTTTCGAATGTTCTATGGAGGCATCTACTGTATACTTATTACTTGGAGTTTCTTC CAACTGTGATTGTGATTTTTCTGAATACAATAAACTTTGAGTGGGCCTTAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 214-392, gnl|bosTau2|chr23 (5626019-5626197) | |
| 214-392, gnl|Hg17|chr6 (33083959-33083781) | |
| 214-392, gnl|Mm7|chr17 (32173746-32173924) | |
| 405-687, gnl|bosTau2|chr23 (22968393-22968111) | |
| 405-687, gnl|canFam2|chr12 (5139846-5140124) | |
| 405-687, gnl|dasNov1|scaffold_28749 (42257-41979) | |
| 405-687, gnl|echTel1|scaffold_237306 (413-703) | |
| 405-687, gnl|hg17|chr6 (32518917-32519205) | |
| 405-687, gnl|Hg17|chr6 (32518939-32519221) | |
| 405-687, gnl|loxAfr1|scaffold_13685 (48640-48924) | |
| 405-687, gnl|mm7|chr17 (32421136-32420857) | |
| 405-687, gnl|Mm7|chr17 (32421121-32420839) | |
| 405-687, gnl|monDom2|scaffold_42 (16445110-16444823) | |
| 405-687, gnl|oryCun1|scaffold_172037 (7532-7811) | |
| 405-687, gnl|panTro1|chr5 (32911602-32911890) | |
| 405-687, gnl|rheMac2|chr4 (32785037-32784765) | |
| 405-687, gnl|rn3|chr20 (4639536-4639816) | |
| 405-687, gnl|xenTro1|scaffold_1109 (301337-301070) | |
| 838-1248, gnl|bosTau2|chr23 (22966974-22966554) | |
| 838-1248, gnl|canFam2|chr12 (5141192-5141571) | |
| 838-1248, gnl|dasNov1|scaffold_28749 (40906-40575) | |
| 838-1248, gnl|echTel1|scaffold_168457 (6512-6196) | |
| 838-1248, gnl|hg17|chr6 (32520302-32520648) | |
| 838-1248, gnl|Hg17|chr6 (32520392-32520792) | |
| 838-1248, gnl|loxAfr1|scaffold_13685 (49984-50336) | |
| 838-1248, gnl|mm7|chr17 (32419610-32419304) | |
| 838-1248, gnl|Mm7|chr17 (32419521-32419178) | |
| 838-1248, gnl|monDom2|scaffold_261 (210067-209710) | |
| 838-1248, gnl|oryCun1|scaffold_172037 (8788-9135) | |
| 838-1248, gnl|panTro1|chr5 (32912984-32913329) | |
| 838-1248, gnl|rn3|chr20 (4641049-4641352) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 214-392, gnl|bosTau2|chr23 (5626019-5626197) | |
| 214-392, gnl|Hg17|chr6 (33083959-33083781) | |
| 214-392, gnl|Mm7|chr17 (32173746-32173924) | |
| 405-687, gnl|bosTau2|chr23 (22968393-22968111) | |
| 405-687, gnl|canFam2|chr12 (5139846-5140124) | |
| 405-687, gnl|dasNov1|scaffold_28749 (42257-41979) | |
| 405-687, gnl|echTel1|scaffold_237306 (413-703) | |
| 405-687, gnl|hg17|chr6 (32518917-32519205) | |
| 405-687, gnl|Hg17|chr6 (32518939-32519221) | |
| 405-687, gnl|loxAfr1|scaffold_13685 (48640-48924) | |
| 405-687, gnl|mm7|chr17 (32421136-32420857) | |
| 405-687, gnl|Mm7|chr17 (32421121-32420839) | |
| 405-687, gnl|monDom2|scaffold_42 (16445110-16444823) | |
| 405-687, gnl|oryCun1|scaffold_172037 (7532-7811) | |
| 405-687, gnl|panTro1|chr5 (32911602-32911890) | |
| 405-687, gnl|rheMac2|chr4 (32785037-32784765) | |
| 405-687, gnl|rn3|chr20 (4639536-4639816) | |
| 405-687, gnl|xenTro1|scaffold_1109 (301337-301070) | |
| 838-1248, gnl|bosTau2|chr23 (22966974-22966554) | |
| 838-1248, gnl|canFam2|chr12 (5141192-5141571) | |
| 838-1248, gnl|dasNov1|scaffold_28749 (40906-40575) | |
| 838-1248, gnl|echTel1|scaffold_168457 (6512-6196) | |
| 838-1248, gnl|hg17|chr6 (32520302-32520648) | |
| 838-1248, gnl|Hg17|chr6 (32520392-32520792) | |
| 838-1248, gnl|loxAfr1|scaffold_13685 (49984-50336) | |
| 838-1248, gnl|mm7|chr17 (32419610-32419304) | |
| 838-1248, gnl|Mm7|chr17 (32419521-32419178) | |
| 838-1248, gnl|monDom2|scaffold_261 (210067-209710) | |
| 838-1248, gnl|oryCun1|scaffold_172037 (8788-9135) | |
| 838-1248, gnl|panTro1|chr5 (32912984-32913329) | |
| 838-1248, gnl|rn3|chr20 (4641049-4641352) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| cly (4.46375) | |
| csp (3.86847) | |
| clu (3.82867) | |
| lnt (2.56155) | |
| cag (2.41911) | |
| cty (2.39384) | |
| ill (1.75593) | |
| pro (1.5361) | |
| spl (1.14548) | |
| thg (1.14112) | |
| med (1.04627) | |
| col (0.975039) | |
| fty (0.879198) | |
| nlu (0.575043) | |
| cov (0.528611) | |
| sin (0.524843) | |
| rec (0.519211) | |
| duo (0.518403) | |
| mcp (0.511945) | |
| cje (0.495704) | |
| jej (0.494609) | |
| ski (0.440205) | |
| hlv (0.417769) | |
| ova (0.387397) | |
| sto (0.359648) | |
| jca (0.34188) | |
| nco (0.323468) | |
| mga (0.32041) | |
| cli (0.305623) | |
| fat (0.294855) | |
| cga (0.279096) | |
| che (0.272628) | |
| ute (0.265569) | |
| kid (0.259471) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (4.46375) | |
| csp (3.86847) | |
| clu (3.82867) | |
| lnt (2.56155) | |
| cag (2.41911) | |
| cty (2.39384) | |
| ill (1.75593) | |
| pro (1.5361) | |
| spl (1.14548) | |
| thg (1.14112) | |
| med (1.04627) | |
| col (0.975039) | |
| fty (0.879198) | |
| nlu (0.575043) | |
| cov (0.528611) | |
| sin (0.524843) | |
| rec (0.519211) | |
| duo (0.518403) | |
| mcp (0.511945) | |
| cje (0.495704) | |
| jej (0.494609) | |
| ski (0.440205) | |
| hlv (0.417769) | |
| ova (0.387397) | |
| sto (0.359648) | |
| jca (0.34188) | |
| nco (0.323468) | |
| mga (0.32041) | |
| cli (0.305623) | |
| fat (0.294855) | |
| cga (0.279096) | |
| che (0.272628) | |
| ute (0.265569) | |
| kid (0.259471) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| eje (0.0988338) | |
| ldo (0.0970026) |