Ss1.1-Lng1-LNG010023A07.5
|
GGGAGGGTCCTCGGCTAAAGCCAAAAGCCGATCAAAGTGGTGGGACTCGCGCCGCGGCCG
CGGAGACGTGAAGGCCCGCCGCACGCCTGCTCGCTGTCCGGGTCGGTGCTCGCCCTCGCT
GCCCTGTCCCCGGCCCCATGGAGAAGACGGAGCTGATCCAGAAGGCGAAGCTGGCCGAGC
AGGCCGAGCGCTACGACGACATGGCCACCTGCATGAAGGCCGTGACGGAGCAGGGCGCCG
AGCTGTCCAACGAGGAGCGCAACCTGCTCTCGGTGGCCTACAAGAACGTGGTCGGGGGCC
GCAGGTCCGCCTGGAGGGTCATCTCGAGCATCGAGCAGAAGACCGACACCTCCGACAAGA
AGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGCGGTCCATCTGCA
CCACGGTCCTGGAATTGTTGGATAAGTATTTAATAGCCAATGCAACTAATCCAGAGAGTA
AGGTCTTCTACCTGAAAATGAAGGGAGATTACTTCCGGTACCTTGCTGAGGTTGCTTGCG
GTGATGATCGGAAACAAACGATAGATAATTCCCAGGGAGCTTACCAAGAGGCTTTTGATA
TAAGCAAGAAAGAGATGCAACCCACACACCCCATCCGCCTGGGGCTGGCTCTTAACTTCT
CTGTATTTTACTATGAGATCCTCAATAATCCAGAACTTGCCTGCACACTGGCCAAAACGG
CATTTGATGAGGCCATTGCAGAGCTCGACACACTGAACGAAGACTCATACAAAGACAGCA
CCCTCATCATGCAGTTGCTTAGAGACAACCTCACATTGTGGACATCAGACAGTGCAGGAG
AAGAATGTGATGCAGCAGAAGGGGCAGAAAACTAAGCGCATCCAGGGCGGTGTCCTCCTT
CCCTCAAGAAGCCTTTGTACTCGCCTCCATTCCTCCGCCGTCCGGCTTCCCTCTAGCAGA
GAACCCCAGTCCTGTGTATGGAATCAACTGTGGATAGTCTTTTCACACTGCGGCTTTGGG
AAAACGCCATCCCTTGATTTGTATTTGTCTTGGCCTTCCTGGTGTGCAGTTACTGCTGTA
GAAAAGTATTAATAGCTTCATTTCGTATAAACATAAGTACCTGCCCAACACTTATGTAGA
GGACTAAAATGTATCTGGTATTTAAGTAATCTGAACCAGCTCTGCAAGGGACTGTGTTTT
GTATTACTGTGAAGATATGAAAATGTAGTTAATTACAATTTAAAGGATGTTCTACATAAC
TTCTTAATTTCTACATTCCCGCCCTTACTCTTCCTCTCCCAGGCTCTTCATGTATTCCTT
TTTGGTAGGAATCCAGAAGTATTAGATTGAATGGAAAAGCATTTGACATTTGGGGGCTGG
GGGGTCGCAAATTAAGATGCCTCCTGTATCGTATATGACGGAGGTTTTGTGTATCTGTGA
CAACAGGGAGTTTCCTTATTCACTCTTCATTTGCTGCTGTTTAAGTTGACAACCTTCCTT
CCCAATAAAAATTCACTTACACCTCCTGCCTTTGTAGTTCTGGTATTCACTTTACTATGT
CATAGAAGTAGCATGTTGCTGCCAGAGTACAAGCATTGCTTTTGGCGAATTAAAGTGCAT
GTCATTTCTTAATACACTAGAGAGGGAAAGTGAAGTCCACACGTCAAGTCTAAAACTTTA
GTACTTTTCCATGCAGGTTTGTGCACATGGGAGAGGGTGTCCAGTTTGTCTAGTGATTGT
TATTTAGAGAGTTGGACCACTATTGTATGTTGCTAATCATTGACTGTAGTCCCAAAAAAA
GCCTTGTGAAAATGTTATGCCCTATGTAACAGCAGAGTAACATAAAATAAAATTACATTT
TATAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAGGGTCCTCGGCTAAAGCCAAAAGCCGATCAAAGTGGTGGGACTCGCGCCGCGGCCG
CGGAGACGTGAAGGCCCGCCGCACGCCTGCTCGCTGTCCGGGTCGGTGCTCGCCCTCGCT
GCCCTGTCCCCGGCCCCATGGAGAAGACGGAGCTGATCCAGAAGGCGAAGCTGGCCGAGC
AGGCCGAGCGCTACGACGACATGGCCACCTGCATGAAGGCCGTGACGGAGCAGGGCGCCG
AGCTGTCCAACGAGGAGCGCAACCTGCTCTCGGTGGCCTACAAGAACGTGGTCGGGGGCC
GCAGGTCCGCCTGGAGGGTCATCTCGAGCATCGAGCAGAAGACCGACACCTCCGACAAGA
AGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGCGGTCCATCTGCA
CCACGGTCCTGGAATTGTTGGATAAGTATTTAATAGCCAATGCAACTAATCCAGAGAGTA
AGGTCTTCTACCTGAAAATGAAGGGAGATTACTTCCGGTACCTTGCTGAGGTTGCTTGCG
GTGATGATCGGAAACAAACGATAGATAATTCCCAGGGAGCTTACCAAGAGGCTTTTGATA
TAAGCAAGAAAGAGATGCAACCCACACACCCCATCCGCCTGGGGCTGGCTCTTAACTTCT
CTGTATTTTACTATGAGATCCTCAATAATCCAGAACTTGCCTGCACACTGGCCAAAACGG
CATTTGATGAGGCCATTGCAGAGCTCGACACACTGAACGAAGACTCATACAAAGACAGCA
CCCTCATCATGCAGTTGCTTAGAGACAACCTCACATTGTGGACATCAGACAGTGCAGGAG
AAGAATGTGATGCAGCAGAAGGGGCAGAAAACTAAGCGCATCCAGGGCGGTGTCCTCCTT
CCCTCAAGAAGCCTTTGTACTCGCCTCCATTCCTCCGCCGTCCGGCTTCCCTCTAGCAGA
GAACCCCAGTCCTGTGTATGGAATCAACTGTGGATAGTCTTTTCACACTGCGGCTTTGGG
AAAACGCCATCCCTTGATTTGTATTTGTCTTGGCCTTCCTGGTGTGCAGTTACTGCTGTA
GAAAAGTATTAATAGCTTCATTTCGTATAAACATAAGTACCTGCCCAACACTTATGTAGA
GGACTAAAATGTATCTGGTATTTAAGTAATCTGAACCAGCTCTGCAAGGGACTGTGTTTT
GTATTACTGTGAAGATATGAAAATGTAGTTAATTACAATTTAAAGGATGTTCTACATAAC
TTCTTAATTTCTACATTCCCGCCCTTACTCTTCCTCTCCCAGGCTCTTCATGTATTCCTT
TTTGGTAGGAATCCAGAAGTATTAGATTGAATGGAAAAGCATTTGACATTTGGGGGCTGG
GGGGTCGCAAATTAAGATGCCTCCTGTATCGTATATGACGGAGGTTTTGTGTATCTGTGA
CAACAGGGAGTTTCCTTATTCACTCTTCATTTGCTGCTGTTTAAGTTGACAACCTTCCTT
CCCAATAAAAATTCACTTACACCTCCTGCCTTTGTAGTTCTGGTATTCACTTTACTATGT
CATAGAAGTAGCATGTTGCTGCCAGAGTACAAGCATTGCTTTTGGCGAATTAAAGTGCAT
GTCATTTCTTAATACACTAGAGAGGGAAAGTGAAGTCCACACGTCAAGTCTAAAACTTTA
GTACTTTTCCATGCAGGTTTGTGCACATGGGAGAGGGTGTCCAGTTTGTCTAGTGATTGT
TATTTAGAGAGTTGGACCACTATTGTATGTTGCTAATCATTGACTGTAGTCCCAAAAAAA
GCCTTGTGAAAATGTTATGCCCTATGTAACAGCAGAGTAACATAAAATAAAATTACATTT
TATAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
76-432, gnl|bosTau2|chr11 (68309264-68309623) |
|
76-432, gnl|Hg17|chr2 (9721280-9720885) |
|
76-432, gnl|Mm7|chr12 (19776553-19776202) |
| |
|
435-831, gnl|bosTau2|chr16 (824971-824576) |
|
435-831, gnl|Hg17|chr2 (127031658-127031281) |
|
435-831, gnl|Mm7|chr3 (92795765-92796156) |
| |
|
480-761, gnl|bosTau2|chr10 (26944458-26944739) |
|
480-761, gnl|Hg17|chr2 (138879744-138879463) |
|
480-761, gnl|Mm7|chr11 (75837235-75840920) |
| |
|
1090-1869, gnl|bosTau2|chr11 (68338604-68339381) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
76-432, gnl|bosTau2|chr11 (68309264-68309623) |
|
76-432, gnl|Hg17|chr2 (9721280-9720885) |
|
76-432, gnl|Mm7|chr12 (19776553-19776202) |
| |
|
435-831, gnl|bosTau2|chr16 (824971-824576) |
|
435-831, gnl|Hg17|chr2 (127031658-127031281) |
|
435-831, gnl|Mm7|chr3 (92795765-92796156) |
| |
|
480-761, gnl|bosTau2|chr10 (26944458-26944739) |
|
480-761, gnl|Hg17|chr2 (138879744-138879463) |
|
480-761, gnl|Mm7|chr11 (75837235-75840920) |
| |
|
1090-1869, gnl|bosTau2|chr11 (68338604-68339381) |
|
cbr (4.86307) |
|
cbe (2.39234) |
|
ece (1.60514) |
|
aor (1.36692) |
|
clu (1.19646) |
|
ecc (1.15035) |
|
ebs (0.94641) |
|
spl (0.859107) |
|
cty (0.832639) |
|
ret (0.7724) |
|
sug (0.763747) |
|
lin (0.728014) |
|
gul (0.710353) |
|
fhi (0.678311) |
|
nmm (0.664011) |
|
nco (0.646935) |
|
ova (0.645661) |
|
tes (0.623441) |
|
bla (0.621736) |
|
eep (0.61282) |
|
fat (0.58971) |
|
col (0.585023) |
|
hyp (0.571347) |
|
jca (0.569801) |
|
eye (0.511509) |
|
pgl (0.473934) |
|
pan (0.471921) |
|
fco (0.471624) |
|
mgp (0.461361) |
|
cbl (0.45919) |
|
spc (0.453463) |
|
ski (0.440205) |
|
fcc (0.39557) |
|
eje (0.395335) |
|
kid (0.389206) |
|
elu (0.385356) |
|
thg (0.380373) |
|
nep (0.36785) |
|
fty (0.351679) |
|
fbs (0.350693) |
|
rec (0.346141) |
|
cut (0.339847) |
|
nje (0.33184) |
|
sme (0.305437) |
|
jej (0.296765) |
|
pty (0.285429) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
ese (0.253004) |
|
tra (0.246184) |
|
cly (0.241284) |
|
eru (0.240096) |
|
med (0.232504) |
|
nbm (0.198649) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
ton (0.1755) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
mga (0.160205) |
|
eli (0.151814) |
|
cag (0.151194) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
cbr (4.86307) |
|
cbe (2.39234) |
|
ece (1.60514) |
|
aor (1.36692) |
|
clu (1.19646) |
|
ecc (1.15035) |
|
ebs (0.94641) |
|
spl (0.859107) |
|
cty (0.832639) |
|
ret (0.7724) |
|
sug (0.763747) |
|
lin (0.728014) |
|
gul (0.710353) |
|
fhi (0.678311) |
|
nmm (0.664011) |
|
nco (0.646935) |
|
ova (0.645661) |
|
tes (0.623441) |
|
bla (0.621736) |
|
eep (0.61282) |
|
fat (0.58971) |
|
col (0.585023) |
|
hyp (0.571347) |
|
jca (0.569801) |
|
eye (0.511509) |
|
pgl (0.473934) |
|
pan (0.471921) |
|
fco (0.471624) |
|
mgp (0.461361) |
|
cbl (0.45919) |
|
spc (0.453463) |
|
ski (0.440205) |
|
fcc (0.39557) |
|
eje (0.395335) |
|
kid (0.389206) |
|
elu (0.385356) |
|
thg (0.380373) |
|
nep (0.36785) |
|
fty (0.351679) |
|
fbs (0.350693) |
|
rec (0.346141) |
|
cut (0.339847) |
|
nje (0.33184) |
|
sme (0.305437) |
|
jej (0.296765) |
|
pty (0.285429) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
ese (0.253004) |
|
tra (0.246184) |
|
cly (0.241284) |
|
eru (0.240096) |
|
med (0.232504) |
|
nbm (0.198649) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
ton (0.1755) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
mga (0.160205) |
|
eli (0.151814) |
|
cag (0.151194) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
ste (0.135208) |
