Ss1.1-Lng1-LNG010023D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGATTCACGTTTATTGTTTGGAGGTCACAGGTCAAGTCACTCTTCCCCACCAGAAGGGG AGGCAAATGCCCTGGGTGGGGGACAGGGCGGGGTGGGCGTGGGCCACCAGGGTGGGGGCC CAGGGCAGGCAGGTTCCTTTATTCTATCTGTGGAAGTGGCCGGGGCCTGGGAACATGGCT CTACCCCGTCTGGTCCCCACCCCACCGAGAGCAGGGCAGGGAGCCCCACTGGGTTCTTGC TCCTTGGAGAGAGCAAGGAGACCCAGAGGGGCAGGCCTTGGTCCACAGACTGAGGGGCAG GTGGGCTGCACCACTGAGGGCTGGTTCCACGTCTTGAGGTTCTCTGCACCAGGCGGGGCA GGGCTAGAGCTCATCATGGTCACCCTCGGTGGGTGGTTCAGGCGGTGGCTCTGGGCAGGC GGCTGGCGTCGTCAGCTCCATGAGGTACTCGCAGCGGCTGGGCTCCGTGGTGCTGGTCAC CACCGTCTCCCTCCCACACAGCAGGCGCACAGTGGTGGAGCGATTAGGGCCCTGCCAGCA GCCCGTGCCCTGTTCATACTTCATGGCGCTGAACTTGTCATGGTCGGGGCCGGCCCACGA GCCCCAGGTGCCGAGGCTAGTGGGGGAGCCGCCGAGCTTGGGTTTCTGTGAGACGTGCTT GAAGGGGCAGAGCCGGTAGACATACTCATTGGTGGTGAGCTCGTAGCACTGGCTGTACAG GTAGGCAAACTCCCCGTCGGGGCCAAAATCAAAGGAAATCTCCTGCTCCAGATTCCTGAT GGACTCCTCCATGTCCCTCAAGGACCGCTCAGCCTCCTCGAACTTGTTGCGAGCCTCCTG GGCGGCATCGATGAAGGCCTGCGTCTGCTCGTCATAGGGTGGCATTTTGTCCTCCTCGGT GGGGCTGACTGTCTGGGGTGTCACAAGTGGGGGTGGGGCCTCCTTGGGCTGCTCCGCCTG CACCTGGGAATCCTCTTCCTCCTCTTCCTCTTCCTCCTCCTCTGTCTCTTCTTCCTCCTC GTCCTGGTCCTCGTCCTCCTCCTCTGTGGGTGGTGAGGGCACCGGGGGCTGCTCCTCCTT GGGCTCCGTCAAGTCAGGTGCAGATGGCGATGGCACGTCGGTGGGTGGAACCTCAGACCG GTACTTGTCCCTGATGGCAGCCCAGATGCGGTCATAGAAGGAAGCAGCATCCGTCTGGGA GTCTCCCCCGAGAAGGGTCTGGGCTTCCCCTTCTGATAGTGCCCCGTCCCCGTCCGTGTC CAGCTCTGGGTGGGTCTGAAGCTCGGCCACTGAGACCACTCCATCCATGTCATCGTCCAG CTCCTGGAAGGCGTTGGCTGCCAGCTCCTGCTCCCGCTGGGCCTTGGAGGCGGCCTGCTG CTCTTCCCACAGCTTCCGGTGCTGGTCTTTGGCCTCCTTCTCTGGCTTCTCAGCCTCCTC CTTCACTGCCCGCAGCATCTCCACCTGGTCCTCCAGTGACTTCTTTCCAGCTTGTATCTC AATGAGCTTTTTCTGCTTCTCCTCTCGGGCCTTCTTCCAGTCCTCAATCAGGATCTTCTT CAGGCGGAAGCCCTCTCGGGTCACCTCCGCCATCTGCTGCAGGGTCTCTCTCTCCTTACG GCCCTTTTCTTTGCAGGTGTTCTCACAGACGATCCCACTGTTGTATTCGTCTGTCCCATC ACAGCAGTCACAAACTCCATCATTGACCCATCTGGAGGAGATGTACAGGGGCTTGTAGCC AGTGTTGCTGCAGTGGAAGCTGCCGTTGGGACAAGCAGCTGTGCCTGGTTCATCTGAGCC ATCCTTGCAGTCACAGTAGTCATCATTAACCTGATCAAAAGGAATACTGGCGGAGCCATC CAGGCACGTGAAAGGCTTGGACTCGTCGTAGAAGTGATGATTGGTGAGGGAGACGCCCCG GGGCCGCTTGACCTCCACGGCCCAACACATGGGCAGTAGCAGCAGAAACAGTAACATCTC GCTGGAGGCTCTGAAGCCGGAAACGGGTTACGAGGCTGGGGCAAAGGTTAATATCCACCG CGCCCCCTAACCCAGCAGCCAACGGCTCCTCCTGCAGAAAGAAAGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGATTCACGTTTATTGTTTGGAGGTCACAGGTCAAGTCACTCTTCCCCACCAGAAGGGG AGGCAAATGCCCTGGGTGGGGGACAGGGCGGGGTGGGCGTGGGCCACCAGGGTGGGGGCC CAGGGCAGGCAGGTTCCTTTATTCTATCTGTGGAAGTGGCCGGGGCCTGGGAACATGGCT CTACCCCGTCTGGTCCCCACCCCACCGAGAGCAGGGCAGGGAGCCCCACTGGGTTCTTGC TCCTTGGAGAGAGCAAGGAGACCCAGAGGGGCAGGCCTTGGTCCACAGACTGAGGGGCAG GTGGGCTGCACCACTGAGGGCTGGTTCCACGTCTTGAGGTTCTCTGCACCAGGCGGGGCA GGGCTAGAGCTCATCATGGTCACCCTCGGTGGGTGGTTCAGGCGGTGGCTCTGGGCAGGC GGCTGGCGTCGTCAGCTCCATGAGGTACTCGCAGCGGCTGGGCTCCGTGGTGCTGGTCAC CACCGTCTCCCTCCCACACAGCAGGCGCACAGTGGTGGAGCGATTAGGGCCCTGCCAGCA GCCCGTGCCCTGTTCATACTTCATGGCGCTGAACTTGTCATGGTCGGGGCCGGCCCACGA GCCCCAGGTGCCGAGGCTAGTGGGGGAGCCGCCGAGCTTGGGTTTCTGTGAGACGTGCTT GAAGGGGCAGAGCCGGTAGACATACTCATTGGTGGTGAGCTCGTAGCACTGGCTGTACAG GTAGGCAAACTCCCCGTCGGGGCCAAAATCAAAGGAAATCTCCTGCTCCAGATTCCTGAT GGACTCCTCCATGTCCCTCAAGGACCGCTCAGCCTCCTCGAACTTGTTGCGAGCCTCCTG GGCGGCATCGATGAAGGCCTGCGTCTGCTCGTCATAGGGTGGCATTTTGTCCTCCTCGGT GGGGCTGACTGTCTGGGGTGTCACAAGTGGGGGTGGGGCCTCCTTGGGCTGCTCCGCCTG CACCTGGGAATCCTCTTCCTCCTCTTCCTCTTCCTCCTCCTCTGTCTCTTCTTCCTCCTC GTCCTGGTCCTCGTCCTCCTCCTCTGTGGGTGGTGAGGGCACCGGGGGCTGCTCCTCCTT GGGCTCCGTCAAGTCAGGTGCAGATGGCGATGGCACGTCGGTGGGTGGAACCTCAGACCG GTACTTGTCCCTGATGGCAGCCCAGATGCGGTCATAGAAGGAAGCAGCATCCGTCTGGGA GTCTCCCCCGAGAAGGGTCTGGGCTTCCCCTTCTGATAGTGCCCCGTCCCCGTCCGTGTC CAGCTCTGGGTGGGTCTGAAGCTCGGCCACTGAGACCACTCCATCCATGTCATCGTCCAG CTCCTGGAAGGCGTTGGCTGCCAGCTCCTGCTCCCGCTGGGCCTTGGAGGCGGCCTGCTG CTCTTCCCACAGCTTCCGGTGCTGGTCTTTGGCCTCCTTCTCTGGCTTCTCAGCCTCCTC CTTCACTGCCCGCAGCATCTCCACCTGGTCCTCCAGTGACTTCTTTCCAGCTTGTATCTC AATGAGCTTTTTCTGCTTCTCCTCTCGGGCCTTCTTCCAGTCCTCAATCAGGATCTTCTT CAGGCGGAAGCCCTCTCGGGTCACCTCCGCCATCTGCTGCAGGGTCTCTCTCTCCTTACG GCCCTTTTCTTTGCAGGTGTTCTCACAGACGATCCCACTGTTGTATTCGTCTGTCCCATC ACAGCAGTCACAAACTCCATCATTGACCCATCTGGAGGAGATGTACAGGGGCTTGTAGCC AGTGTTGCTGCAGTGGAAGCTGCCGTTGGGACAAGCAGCTGTGCCTGGTTCATCTGAGCC ATCCTTGCAGTCACAGTAGTCATCATTAACCTGATCAAAAGGAATACTGGCGGAGCCATC CAGGCACGTGAAAGGCTTGGACTCGTCGTAGAAGTGATGATTGGTGAGGGAGACGCCCCG GGGCCGCTTGACCTCCACGGCCCAACACATGGGCAGTAGCAGCAGAAACAGTAACATCTC GCTGGAGGCTCTGAAGCCGGAAACGGGTTACGAGGCTGGGGCAAAGGTTAATATCCACCG CGCCCCCTAACCCAGCAGCCAACGGCTCCTCCTGCAGAAAGAAAGCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 116-312, + strand, RNAz p=0.999828 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 116-312, + strand, RNAz p=0.999828 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-352, gnl|bosTau2|chr7 (11319774-11319440) | |
| 1-352, gnl|Hg17|chr19 (11422774-11421376) | |
| 1-352, gnl|Mm7|chr9 (21892422-21892113) | |
| 459-611, gnl|bosTau2|chr7 (11319117-11318963) | |
| 459-611, gnl|canFam2|chr20 (52907493-52907347) | |
| 459-611, gnl|danRer3|chr2 (33413069-33412916) | |
| 459-611, gnl|dasNov1|scaffold_6001 (41578-41447) | |
| 459-611, gnl|fr1|chrUn (67700753-67700628) | |
| 459-611, gnl|hg17|chr19 (11420884-11421032) | |
| 459-611, gnl|Hg17|chr19 (11421053-11420890) | |
| 459-611, gnl|mm7|chr9 (21891034-21891177) | |
| 459-611, gnl|Mm7|chr9 (21891191-21891041) | |
| 459-611, gnl|monDom2|scaffold_106 (3504559-3504719) | |
| 459-611, gnl|oryCun1|scaffold_215346 (77288-77205) | |
| 459-611, gnl|panTro1|chr20 (11825316-11825464) | |
| 459-611, gnl|rheMac2|chr19 (11271792-11271939) | |
| 459-611, gnl|rn3|chr8 (21117128-21117276) | |
| 459-611, gnl|tetNig1|chr3 (11693759-11693891) | |
| 459-611, gnl|xenTro1|scaffold_468 (856285-856149) | |
| 679-782, gnl|bosTau2|chr7 (11318608-11318505) | |
| 679-782, gnl|Hg17|chr19 (11420451-11420347) | |
| 679-782, gnl|Mm7|chr9 (21890521-21890421) | |
| 939-1113, gnl|bosTau2|chr7 (11317548-11317389) | |
| 939-1113, gnl|canFam2|chr20 (52909049-52908926) | |
| 939-1113, gnl|echTel1|scaffold_53795 (837-948) | |
| 939-1113, gnl|hg17|chr19 (11419272-11419392) | |
| 939-1113, gnl|Hg17|chr19 (11419437-11419272) | |
| 939-1113, gnl|loxAfr1|scaffold_43784 (4451-4325) | |
| 939-1113, gnl|mm7|chr9 (21889662-21889767) | |
| 939-1113, gnl|Mm7|chr9 (21889806-21889658) | |
| 939-1113, gnl|monDom2|scaffold_555 (4886-5035) | |
| 939-1113, gnl|panTro1|chr20 (11823704-11823824) | |
| 939-1113, gnl|rheMac2|chr19 (11269716-11269833) | |
| 939-1113, gnl|rn3|chr8 (21115581-21115680) | |
| 939-1113, gnl|xenTro1|scaffold_468 (858252-858130) | |
| 1513-1633, gnl|bosTau2|chr7 (11269287-11269167) | |
| 1513-1633, gnl|canFam2|chr20 (52915071-52914910) | |
| 1513-1633, gnl|danRer3|chr2 (33429364-33429196) | |
| 1513-1633, gnl|dasNov1|scaffold_62770 (8200-8357) | |
| 1513-1633, gnl|hg17|chr19 (11413018-11413178) | |
| 1513-1633, gnl|Hg17|chr19 (11413172-11413052) | |
| 1513-1633, gnl|mm7|chr9 (21884698-21884854) | |
| 1513-1633, gnl|Mm7|chr9 (21884848-21884728) | |
| 1513-1633, gnl|monDom2|scaffold_106 (3492857-3492993) | |
| 1513-1633, gnl|panTro1|chr20 (11817566-11817726) | |
| 1513-1633, gnl|rheMac2|chr19 (11263266-11263419) | |
| 1513-1633, gnl|rn3|chr8 (21110528-21110684) | |
| 1513-1633, gnl|xenTro1|scaffold_468 (860940-860808) | |
| 1784-1914, gnl|bosTau2|chr7 (11267535-11267404) | |
| 1784-1914, gnl|Hg17|chr19 (11408327-11408199) | |
| 1784-1914, gnl|Mm7|chr9 (21881985-21881854) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-352, gnl|bosTau2|chr7 (11319774-11319440) | |
| 1-352, gnl|Hg17|chr19 (11422774-11421376) | |
| 1-352, gnl|Mm7|chr9 (21892422-21892113) | |
| 459-611, gnl|bosTau2|chr7 (11319117-11318963) | |
| 459-611, gnl|canFam2|chr20 (52907493-52907347) | |
| 459-611, gnl|danRer3|chr2 (33413069-33412916) | |
| 459-611, gnl|dasNov1|scaffold_6001 (41578-41447) | |
| 459-611, gnl|fr1|chrUn (67700753-67700628) | |
| 459-611, gnl|hg17|chr19 (11420884-11421032) | |
| 459-611, gnl|Hg17|chr19 (11421053-11420890) | |
| 459-611, gnl|mm7|chr9 (21891034-21891177) | |
| 459-611, gnl|Mm7|chr9 (21891191-21891041) | |
| 459-611, gnl|monDom2|scaffold_106 (3504559-3504719) | |
| 459-611, gnl|oryCun1|scaffold_215346 (77288-77205) | |
| 459-611, gnl|panTro1|chr20 (11825316-11825464) | |
| 459-611, gnl|rheMac2|chr19 (11271792-11271939) | |
| 459-611, gnl|rn3|chr8 (21117128-21117276) | |
| 459-611, gnl|tetNig1|chr3 (11693759-11693891) | |
| 459-611, gnl|xenTro1|scaffold_468 (856285-856149) | |
| 679-782, gnl|bosTau2|chr7 (11318608-11318505) | |
| 679-782, gnl|Hg17|chr19 (11420451-11420347) | |
| 679-782, gnl|Mm7|chr9 (21890521-21890421) | |
| 939-1113, gnl|bosTau2|chr7 (11317548-11317389) | |
| 939-1113, gnl|canFam2|chr20 (52909049-52908926) | |
| 939-1113, gnl|echTel1|scaffold_53795 (837-948) | |
| 939-1113, gnl|hg17|chr19 (11419272-11419392) | |
| 939-1113, gnl|Hg17|chr19 (11419437-11419272) | |
| 939-1113, gnl|loxAfr1|scaffold_43784 (4451-4325) | |
| 939-1113, gnl|mm7|chr9 (21889662-21889767) | |
| 939-1113, gnl|Mm7|chr9 (21889806-21889658) | |
| 939-1113, gnl|monDom2|scaffold_555 (4886-5035) | |
| 939-1113, gnl|panTro1|chr20 (11823704-11823824) | |
| 939-1113, gnl|rheMac2|chr19 (11269716-11269833) | |
| 939-1113, gnl|rn3|chr8 (21115581-21115680) | |
| 939-1113, gnl|xenTro1|scaffold_468 (858252-858130) | |
| 1513-1633, gnl|bosTau2|chr7 (11269287-11269167) | |
| 1513-1633, gnl|canFam2|chr20 (52915071-52914910) | |
| 1513-1633, gnl|danRer3|chr2 (33429364-33429196) | |
| 1513-1633, gnl|dasNov1|scaffold_62770 (8200-8357) | |
| 1513-1633, gnl|hg17|chr19 (11413018-11413178) | |
| 1513-1633, gnl|Hg17|chr19 (11413172-11413052) | |
| 1513-1633, gnl|mm7|chr9 (21884698-21884854) | |
| 1513-1633, gnl|Mm7|chr9 (21884848-21884728) | |
| 1513-1633, gnl|monDom2|scaffold_106 (3492857-3492993) | |
| 1513-1633, gnl|panTro1|chr20 (11817566-11817726) | |
| 1513-1633, gnl|rheMac2|chr19 (11263266-11263419) | |
| 1513-1633, gnl|rn3|chr8 (21110528-21110684) | |
| 1513-1633, gnl|xenTro1|scaffold_468 (860940-860808) | |
| 1784-1914, gnl|bosTau2|chr7 (11267535-11267404) | |
| 1784-1914, gnl|Hg17|chr19 (11408327-11408199) | |
| 1784-1914, gnl|Mm7|chr9 (21881985-21881854) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cty (0.62448) | |
| hyp (0.42851) | |
| cov (0.396458) | |
| col (0.390016) | |
| eru (0.360144) | |
| eep (0.245128) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.62448) | |
| hyp (0.42851) | |
| cov (0.396458) | |
| col (0.390016) | |
| eru (0.360144) | |
| eep (0.245128) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| med (0.116252) | |
| ecc (0.115035) |