Ss1.1-Lng1-LNG010024A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCGGAGCGGGGAGTGGGGCCTAGCCTCAGCCGGAGCCTGGGAGACGATGCATCACTGT AAGCGATACCGCTCCCCTGAGCCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGG TCTTACAGTCGGGAGCATGAAGGGAGACTGCGATACCCATCTCGAAGGGAGCCTCCGCCC CGAAGATCTCGGTCTAGAAGTCATGACCGCCTACCCTACCAGAGGAGGTACAGGGAGCAC CGTGACAGCGACACATACCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTGCTAT GGATCTTCACGTTCCCATCATCGACGGCGGTCACGGGAGAGGGAGCCCTACCGGACCCGC AAGCACGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAGCAGCGCCTCCTCGAGA AGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGCCACCTG GTGTGCCGGATCGGCGATTGGCTCCAAGAGCGATATGAGATCGTGGGGAACCTGGGTGAA GGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAGAGGGAAGTCTCAGGTTGCC CTGAAGATCATCCGCAACGTGGGCAAGTACCGGGAGGCCGCCCGGCTAGAAATCAATGTG CTTAAAAAAATCAAGGAGAAGGACAAAGAGAACAAGTTCCTGTGCGTCTTGATGTCTGAC TGGTTCAACTTCCATGGTCACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT GAGTTCCTGAAGGAGAATAACTTCCAGCCTTACCCTCTACCGCATGTCCGGCACATGGCC TACCAGCTCTGCCACGCCCTTAGATTTCTACACGAGAACCAACTGACCCACACAGACTTG AAGCCAGAGAACATCCTGTTTGTGAACTCGGAGTTTGAAACCCTCTACAATGAGCACAAG AGCTGTGAGGAGAAGTCTGTGAAGAACACCAGCATCCGAGTGGCTGACTTCGGCAGTGCT ACCTTTGACCACGAGCATCACACAACTATCGTGGCCACCCGTCACTATCGCCCACCTGAG GTCATCCTCGAGCTGGGCTGGGCACAGCCCTGTGACGTCTGGAGCATTGGCTGCATTCTG TTTGAGTACTACCGGGGCTTCACACTCTTCCAGACCCATGAGAATCGAGAACATTTGGTG ATGATGGAAAAGATCCTAGGGCCCATCCCATCCCACATGATCCACCGGACCAGGAAACAG AAGTATTTCTACAAAGGGGGCCTGGTTTGGGATGAGAACAGCTCTGACGGCCGGTATGTG AAGGAGAACTGCAAACCTCTGAAGAGTTACATGCTCCAAGACTCGCTGGAGCACGTGCAG CTGTTTGACCTGATGAGGAAGATGTTAGAATTCGACCCTGCCCAGCGCATTACACTGGCG GAGGCCCTGCTGCACCCCTTCTTTGCTGGCCTGACCCCTGAGGAGCGGTCCTTCCACACC AGCCGCAACCCAAGCAGATGACAGGCACAGGCCACTGCGCCAGGAGATGGAGAGTGGGAC TGGGCTGCCCGGCCCTTTTCTCCAACCTCTACCATTGGCCCCAGGGCCAGAGCCACCCAC GAACAGTGCAATGTGAAGGCAGGCAGGAGCCTGCAGGGGAGGAGACTTGATGCCCAGCTG CCAGAAAGCACAGATTTGACCCAAGCTATTTATATGTTGTAAAGTTATAATAAAGTGTTT CTTACTGTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCGGAGCGGGGAGTGGGGCCTAGCCTCAGCCGGAGCCTGGGAGACGATGCATCACTGT AAGCGATACCGCTCCCCTGAGCCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGG TCTTACAGTCGGGAGCATGAAGGGAGACTGCGATACCCATCTCGAAGGGAGCCTCCGCCC CGAAGATCTCGGTCTAGAAGTCATGACCGCCTACCCTACCAGAGGAGGTACAGGGAGCAC CGTGACAGCGACACATACCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTGCTAT GGATCTTCACGTTCCCATCATCGACGGCGGTCACGGGAGAGGGAGCCCTACCGGACCCGC AAGCACGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAGCAGCGCCTCCTCGAGA AGCCAACAGAGCAGTAAGCGCAGCAGCCGGAGTGTGGAAGATGACAAGGAGGGCCACCTG GTGTGCCGGATCGGCGATTGGCTCCAAGAGCGATATGAGATCGTGGGGAACCTGGGTGAA GGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAGAGGGAAGTCTCAGGTTGCC CTGAAGATCATCCGCAACGTGGGCAAGTACCGGGAGGCCGCCCGGCTAGAAATCAATGTG CTTAAAAAAATCAAGGAGAAGGACAAAGAGAACAAGTTCCTGTGCGTCTTGATGTCTGAC TGGTTCAACTTCCATGGTCACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT GAGTTCCTGAAGGAGAATAACTTCCAGCCTTACCCTCTACCGCATGTCCGGCACATGGCC TACCAGCTCTGCCACGCCCTTAGATTTCTACACGAGAACCAACTGACCCACACAGACTTG AAGCCAGAGAACATCCTGTTTGTGAACTCGGAGTTTGAAACCCTCTACAATGAGCACAAG AGCTGTGAGGAGAAGTCTGTGAAGAACACCAGCATCCGAGTGGCTGACTTCGGCAGTGCT ACCTTTGACCACGAGCATCACACAACTATCGTGGCCACCCGTCACTATCGCCCACCTGAG GTCATCCTCGAGCTGGGCTGGGCACAGCCCTGTGACGTCTGGAGCATTGGCTGCATTCTG TTTGAGTACTACCGGGGCTTCACACTCTTCCAGACCCATGAGAATCGAGAACATTTGGTG ATGATGGAAAAGATCCTAGGGCCCATCCCATCCCACATGATCCACCGGACCAGGAAACAG AAGTATTTCTACAAAGGGGGCCTGGTTTGGGATGAGAACAGCTCTGACGGCCGGTATGTG AAGGAGAACTGCAAACCTCTGAAGAGTTACATGCTCCAAGACTCGCTGGAGCACGTGCAG CTGTTTGACCTGATGAGGAAGATGTTAGAATTCGACCCTGCCCAGCGCATTACACTGGCG GAGGCCCTGCTGCACCCCTTCTTTGCTGGCCTGACCCCTGAGGAGCGGTCCTTCCACACC AGCCGCAACCCAAGCAGATGACAGGCACAGGCCACTGCGCCAGGAGATGGAGAGTGGGAC TGGGCTGCCCGGCCCTTTTCTCCAACCTCTACCATTGGCCCCAGGGCCAGAGCCACCCAC GAACAGTGCAATGTGAAGGCAGGCAGGAGCCTGCAGGGGAGGAGACTTGATGCCCAGCTG CCAGAAAGCACAGATTTGACCCAAGCTATTTATATGTTGTAAAGTTATAATAAAGTGTTT CTTACTGTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1336-1454, - strand, RNAz p=0.94292 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1336-1454, - strand, RNAz p=0.94292 |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 199-417, gnl|bosTau2|chr21 (22809145-22809363) | |
| 199-417, gnl|canFam2|chr30 (40708822-40708610) | |
| 199-417, gnl|dasNov1|scaffold_15758 (10116-10328) | |
| 199-417, gnl|echTel1|scaffold_312287 (7015-7176) | |
| 199-417, gnl|hg17|chr1 (244426538-244426712) | |
| 199-417, gnl|Hg17|chr15 (72699401-72699619) | |
| 199-417, gnl|loxAfr1|scaffold_23575 (5470-5260) | |
| 199-417, gnl|mm7|chr9 (57788492-57788704) | |
| 199-417, gnl|Mm7|chr9 (57788708-57788490) | |
| 199-417, gnl|monDom2|scaffold_41 (2945506-2945715) | |
| 199-417, gnl|panTro1|chr1 (228493843-228494017) | |
| 199-417, gnl|rheMac2|chr1 (209026081-209025927) | |
| 199-417, gnl|rn3|chr8 (61547928-61548089) | |
| 578-698, gnl|bosTau2|chr21 (22813902-22814022) | |
| 578-698, gnl|canFam2|chr30 (40713387-40713273) | |
| 578-698, gnl|dasNov1|scaffold_15758 (5463-5583) | |
| 578-698, gnl|echTel1|scaffold_312287 (3010-3124) | |
| 578-698, gnl|fr1|chrUn (289892567-289892453) | |
| 578-698, gnl|hg17|chr1 (244426164-244426284) | |
| 578-698, gnl|Hg17|chr15 (72704292-72704412) | |
| 578-698, gnl|loxAfr1|scaffold_23575 (10250-10136) | |
| 578-698, gnl|mm7|chr9 (57782918-57783037) | |
| 578-698, gnl|Mm7|chr9 (57783040-57782918) | |
| 578-698, gnl|monDom2|scaffold_41 (2940312-2940432) | |
| 578-698, gnl|oryCun1|scaffold_96358 (4125-4005) | |
| 578-698, gnl|panTro1|chr1 (228493471-228493591) | |
| 578-698, gnl|rheMac2|chr1 (209026444-209026324) | |
| 578-698, gnl|rn3|chr8 (61542816-61542934) | |
| 699-865, gnl|bosTau2|chr21 (22814635-22814801) | |
| 699-865, gnl|canFam2|chr30 (40714102-40713937) | |
| 699-865, gnl|canFam2|chr30 (40713916-40714112) | |
| 699-865, gnl|danRer3|chr14 (2932263-2932060) | |
| 699-865, gnl|danRer3|chr19 (13967924-13967744) | |
| 699-865, gnl|dasNov1|scaffold_15758 (4515-4680) | |
| 699-865, gnl|dasNov1|scaffold_15758 (4701-4505) | |
| 699-865, gnl|echTel1|scaffold_312287 (2296-2461) | |
| 699-865, gnl|echTel1|scaffold_312287 (2481-2287) | |
| 699-865, gnl|fr1|chrUn (289892799-289892642) | |
| 699-865, gnl|fr1|chrUn (156420886-156420696) | |
| 699-865, gnl|galGal2|chr10 (50305-50104) | |
| 699-865, gnl|hg17|chr1 (244426000-244426163) | |
| 699-865, gnl|hg17|chr15 (72705177-72705373) | |
| 699-865, gnl|Hg17|chr15 (72705196-72705362) | |
| 699-865, gnl|loxAfr1|scaffold_23575 (11247-11082) | |
| 699-865, gnl|loxAfr1|scaffold_23575 (11062-11257) | |
| 699-865, gnl|mm7|chr9 (57782169-57782334) | |
| 699-865, gnl|mm7|chr9 (57782355-57782159) | |
| 699-865, gnl|Mm7|chr9 (57782334-57782168) | |
| 699-865, gnl|monDom2|scaffold_41 (2939732-2939897) | |
| 699-865, gnl|monDom2|scaffold_41 (2939914-2939719) | |
| 699-865, gnl|oryCun1|scaffold_96358 (4518-4358) | |
| 699-865, gnl|oryCun1|scaffold_96358 (4341-4533) | |
| 699-865, gnl|panTro1|chr1 (228493307-228493470) | |
| 699-865, gnl|panTro1|chr16_random (21834915-21835111) | |
| 699-865, gnl|rheMac2|chr1 (209026606-209026445) | |
| 699-865, gnl|rheMac2|chr7 (53428241-53428437) | |
| 699-865, gnl|rn3|chr8 (61542053-61542218) | |
| 699-865, gnl|rn3|chr8 (61542239-61542043) | |
| 699-865, gnl|tetNig1|chr21_random (2454196-2454045) | |
| 699-865, gnl|tetNig1|chr21_random (2454009-2454214) | |
| 699-865, gnl|xenTro1|scaffold_295 (35767-35592) | |
| 959-1088, gnl|bosTau2|chr21 (22816213-22816342) | |
| 959-1088, gnl|Hg17|chr15 (72706931-72707060) | |
| 959-1088, gnl|Mm7|chr9 (57781068-57780939) | |
| 1336-1752, gnl|bosTau2|chr21 (22818150-22818568) | |
| 1336-1752, gnl|Hg17|chr15 (72709092-72709510) | |
| 1336-1752, gnl|Mm7|chr9 (57778796-57778377) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-417, gnl|bosTau2|chr21 (22809145-22809363) | |
| 199-417, gnl|canFam2|chr30 (40708822-40708610) | |
| 199-417, gnl|dasNov1|scaffold_15758 (10116-10328) | |
| 199-417, gnl|echTel1|scaffold_312287 (7015-7176) | |
| 199-417, gnl|hg17|chr1 (244426538-244426712) | |
| 199-417, gnl|Hg17|chr15 (72699401-72699619) | |
| 199-417, gnl|loxAfr1|scaffold_23575 (5470-5260) | |
| 199-417, gnl|mm7|chr9 (57788492-57788704) | |
| 199-417, gnl|Mm7|chr9 (57788708-57788490) | |
| 199-417, gnl|monDom2|scaffold_41 (2945506-2945715) | |
| 199-417, gnl|panTro1|chr1 (228493843-228494017) | |
| 199-417, gnl|rheMac2|chr1 (209026081-209025927) | |
| 199-417, gnl|rn3|chr8 (61547928-61548089) | |
| 578-698, gnl|bosTau2|chr21 (22813902-22814022) | |
| 578-698, gnl|canFam2|chr30 (40713387-40713273) | |
| 578-698, gnl|dasNov1|scaffold_15758 (5463-5583) | |
| 578-698, gnl|echTel1|scaffold_312287 (3010-3124) | |
| 578-698, gnl|fr1|chrUn (289892567-289892453) | |
| 578-698, gnl|hg17|chr1 (244426164-244426284) | |
| 578-698, gnl|Hg17|chr15 (72704292-72704412) | |
| 578-698, gnl|loxAfr1|scaffold_23575 (10250-10136) | |
| 578-698, gnl|mm7|chr9 (57782918-57783037) | |
| 578-698, gnl|Mm7|chr9 (57783040-57782918) | |
| 578-698, gnl|monDom2|scaffold_41 (2940312-2940432) | |
| 578-698, gnl|oryCun1|scaffold_96358 (4125-4005) | |
| 578-698, gnl|panTro1|chr1 (228493471-228493591) | |
| 578-698, gnl|rheMac2|chr1 (209026444-209026324) | |
| 578-698, gnl|rn3|chr8 (61542816-61542934) | |
| 699-865, gnl|bosTau2|chr21 (22814635-22814801) | |
| 699-865, gnl|canFam2|chr30 (40714102-40713937) | |
| 699-865, gnl|canFam2|chr30 (40713916-40714112) | |
| 699-865, gnl|danRer3|chr14 (2932263-2932060) | |
| 699-865, gnl|danRer3|chr19 (13967924-13967744) | |
| 699-865, gnl|dasNov1|scaffold_15758 (4515-4680) | |
| 699-865, gnl|dasNov1|scaffold_15758 (4701-4505) | |
| 699-865, gnl|echTel1|scaffold_312287 (2296-2461) | |
| 699-865, gnl|echTel1|scaffold_312287 (2481-2287) | |
| 699-865, gnl|fr1|chrUn (289892799-289892642) | |
| 699-865, gnl|fr1|chrUn (156420886-156420696) | |
| 699-865, gnl|galGal2|chr10 (50305-50104) | |
| 699-865, gnl|hg17|chr1 (244426000-244426163) | |
| 699-865, gnl|hg17|chr15 (72705177-72705373) | |
| 699-865, gnl|Hg17|chr15 (72705196-72705362) | |
| 699-865, gnl|loxAfr1|scaffold_23575 (11247-11082) | |
| 699-865, gnl|loxAfr1|scaffold_23575 (11062-11257) | |
| 699-865, gnl|mm7|chr9 (57782169-57782334) | |
| 699-865, gnl|mm7|chr9 (57782355-57782159) | |
| 699-865, gnl|Mm7|chr9 (57782334-57782168) | |
| 699-865, gnl|monDom2|scaffold_41 (2939732-2939897) | |
| 699-865, gnl|monDom2|scaffold_41 (2939914-2939719) | |
| 699-865, gnl|oryCun1|scaffold_96358 (4518-4358) | |
| 699-865, gnl|oryCun1|scaffold_96358 (4341-4533) | |
| 699-865, gnl|panTro1|chr1 (228493307-228493470) | |
| 699-865, gnl|panTro1|chr16_random (21834915-21835111) | |
| 699-865, gnl|rheMac2|chr1 (209026606-209026445) | |
| 699-865, gnl|rheMac2|chr7 (53428241-53428437) | |
| 699-865, gnl|rn3|chr8 (61542053-61542218) | |
| 699-865, gnl|rn3|chr8 (61542239-61542043) | |
| 699-865, gnl|tetNig1|chr21_random (2454196-2454045) | |
| 699-865, gnl|tetNig1|chr21_random (2454009-2454214) | |
| 699-865, gnl|xenTro1|scaffold_295 (35767-35592) | |
| 959-1088, gnl|bosTau2|chr21 (22816213-22816342) | |
| 959-1088, gnl|Hg17|chr15 (72706931-72707060) | |
| 959-1088, gnl|Mm7|chr9 (57781068-57780939) | |
| 1336-1752, gnl|bosTau2|chr21 (22818150-22818568) | |
| 1336-1752, gnl|Hg17|chr15 (72709092-72709510) | |
| 1336-1752, gnl|Mm7|chr9 (57778796-57778377) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| amn (0.417711) | |
| col (0.390016) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cje (0.165235) | |
| spl (0.143184) | |
| cst (0.140036) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| col (0.390016) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cje (0.165235) | |
| spl (0.143184) | |
| cst (0.140036) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| med (0.116252) | |
| jej (0.0989218) |