Non-Coding RNA Search

Ss1.1-Lng1-LNG010024B02.5

Sequence:


               
               ATTGCCACGTTATAAAATATCTGGGACCTAATTTCCACCATGTGCACAGTTACTGAACGT
GTTCGATATTCCATCATTGTCTCATACGAACTGAACAGACTCGAAAACTCATCAAATCCA
GTAAGTCCTTTACTGATGATTTATTGCTTTAGGGCAAAAAGCTATAAACATGGAATTTGA
GCAATGAAAATGCTTTGCATGGGATAAACACGTTCCGTGCTACACAAATCATGAGAAAAA
TGAGGAATGCTGTAAAACATGACAGATTGCCCAAGTGCTATTTTTCCCTCTATTGGGAAA
TTCCAAGACATTTCTTACAAAAGTGGCAGTTGGAATACTTAAATATGAGGTCATAGTTTG
AAAATAGACACACACACACACACACACACACACACACACACACACACAGACACACACACA
CACACACACACACACTGTATTCACATCTGACCATTCAGCCATCCCCGATTTTCCGCTGTG
CAGGGTCATCATTGTAGATATTTTGGAGCAAGATAAGTCTTTAAAAATCGGTGACCTGGG
AGTTCTCATTGTGGCTCAGTGGGCCATGAGTCCAACCAGTATCCATGAAGATGCTGGCTC
GATTCCGGGCCTCACTCAGTGGATCAAGGATCCGGCATTGCCGCAAGCTGTGGTGTAGGT
CGAAGACATGGCTTGGATCCAGTGTTTCTGTGGCTCTGGCTCTGATTCAACTTCTAGCCT
GGGAACTTCCACATGCCACAAGTGCGGCCCTAAAAAAGCAAAAAAAAAAAAAAAACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCCACGTTATAAAATATCTGGGACCTAATTTCCACCATGTGCACAGTTACTGAACGT
GTTCGATATTCCATCATTGTCTCATACGAACTGAACAGACTCGAAAACTCATCAAATCCA
GTAAGTCCTTTACTGATGATTTATTGCTTTAGGGCAAAAAGCTATAAACATGGAATTTGA
GCAATGAAAATGCTTTGCATGGGATAAACACGTTCCGTGCTACACAAATCATGAGAAAAA
TGAGGAATGCTGTAAAACATGACAGATTGCCCAAGTGCTATTTTTCCCTCTATTGGGAAA
TTCCAAGACATTTCTTACAAAAGTGGCAGTTGGAATACTTAAATATGAGGTCATAGTTTG
AAAATAGACACACACACACACACACACACACACACACACACACACACAGACACACACACA
CACACACACACACACTGTATTCACATCTGACCATTCAGCCATCCCCGATTTTCCGCTGTG
CAGGGTCATCATTGTAGATATTTTGGAGCAAGATAAGTCTTTAAAAATCGGTGACCTGGG
AGTTCTCATTGTGGCTCAGTGGGCCATGAGTCCAACCAGTATCCATGAAGATGCTGGCTC
GATTCCGGGCCTCACTCAGTGGATCAAGGATCCGGCATTGCCGCAAGCTGTGGTGTAGGT
CGAAGACATGGCTTGGATCCAGTGTTTCTGTGGCTCTGGCTCTGATTCAACTTCTAGCCT
GGGAACTTCCACATGCCACAAGTGCGGCCCTAAAAAAGCAAAAAAAAAAAAAAAACCAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-316, gnl|bosTau2|chr14 (3820140-3820461)
               

               
               1-316, gnl|canFam2|chr13 (32719943-32720154)
               

               
               1-316, gnl|hg17|chr8 (134312813-134313023)
               

               
               1-316, gnl|Hg17|chr8 (134313145-134312833)
               

               
               1-316, gnl|loxAfr1|scaffold_1631 (59494-59704)
               

               
               1-316, gnl|mm7|chr15 (67006672-67006882)
               

               
               1-316, gnl|Mm7|chr15 (67007039-67006688)
               

               
               1-316, gnl|monDom2|scaffold_3 (16969375-16969175)
               

               
               1-316, gnl|oryCun1|scaffold_184492 (80510-80304)
               

               
               1-316, gnl|panTro1|chr7 (137288887-137289097)
               

               
               1-316, gnl|rheMac2|chr8 (135796346-135796557)
               

               
               1-316, gnl|rn3|chr7 (104328827-104329033)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-316, gnl|bosTau2|chr14 (3820140-3820461)
               

               
               1-316, gnl|canFam2|chr13 (32719943-32720154)
               

               
               1-316, gnl|hg17|chr8 (134312813-134313023)
               

               
               1-316, gnl|Hg17|chr8 (134313145-134312833)
               

               
               1-316, gnl|loxAfr1|scaffold_1631 (59494-59704)
               

               
               1-316, gnl|mm7|chr15 (67006672-67006882)
               

               
               1-316, gnl|Mm7|chr15 (67007039-67006688)
               

               
               1-316, gnl|monDom2|scaffold_3 (16969375-16969175)
               

               
               1-316, gnl|oryCun1|scaffold_184492 (80510-80304)
               

               
               1-316, gnl|panTro1|chr7 (137288887-137289097)
               

               
               1-316, gnl|rheMac2|chr8 (135796346-135796557)
               

               
               1-316, gnl|rn3|chr7 (104328827-104329033)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-316, gnl\|bosTau2\|chr14 (3820140-3820461)
	1-316, gnl\|canFam2\|chr13 (32719943-32720154)
	1-316, gnl\|hg17\|chr8 (134312813-134313023)
	1-316, gnl\|Hg17\|chr8 (134313145-134312833)
	1-316, gnl\|loxAfr1\|scaffold_1631 (59494-59704)
	1-316, gnl\|mm7\|chr15 (67006672-67006882)
	1-316, gnl\|Mm7\|chr15 (67007039-67006688)
	1-316, gnl\|monDom2\|scaffold_3 (16969375-16969175)
	1-316, gnl\|oryCun1\|scaffold_184492 (80510-80304)
	1-316, gnl\|panTro1\|chr7 (137288887-137289097)
	1-316, gnl\|rheMac2\|chr8 (135796346-135796557)
	1-316, gnl\|rn3\|chr7 (104328827-104329033)