Ss1.1-Lng1-LNG010024B05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGATCAAAGACTGAGGACATGGAGCTGAGCAGAGTTGCCGTGGCCCTGGGGCCCACT GGCCAGCTCCTCCTGTTCCTGAGCTTCCAGACCCTGGCTGCCCAGGCTGCCGACACCTGT CCAGAGGTCAAGGTGGTGGGTCTGGAGGGCTCAGACAAGCTCTCCATCCTCCGAGGCTGC CCGGGGCTGCCTGGAGCCGCAGGGCCCAAGGGAGAGGCGGGCGCCAATGGACCGAAGGGA GAGCGAGGCTCCCCCGGCGTCGTCGGGAAGGCAGGACCGGCTGGGCCCAAAGGAGACCGA GGGGAGAAGGGCGCGCGTGGAGAGAAAGGAGAGCCTGGGCAGCTCCAGTCATGTGCCACA GGACCTCGGACCTGCAAGGAGCTGCTGACCAGGGGGCACTTTCTGAGCGGCTGGCACACC ATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTGTGACATGGACACGGATGGCGGG GGGTGGACCGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGACTTCTACCGGGACTGGGCC GCGTACAAGCGGGGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTGGGGAACGACCACATC CACGCCCTGACGGCCCAGGGAACCAGTGAGCTCCGGGTGGACCTCGTGGACTTCGAGGGC AACCACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAGGCAGAGAAGTACAAG CTGGTCCTGGGAGGCTTCCTGGAGGGCAATGCAGGTGACTCCCTGTCGTCCCACAGAGAC CAGTTCTTCTCCACCAAAGACCAGGACAACGACAACCATTCGGGAAACTGCGCGGAGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGATCAAAGACTGAGGACATGGAGCTGAGCAGAGTTGCCGTGGCCCTGGGGCCCACT GGCCAGCTCCTCCTGTTCCTGAGCTTCCAGACCCTGGCTGCCCAGGCTGCCGACACCTGT CCAGAGGTCAAGGTGGTGGGTCTGGAGGGCTCAGACAAGCTCTCCATCCTCCGAGGCTGC CCGGGGCTGCCTGGAGCCGCAGGGCCCAAGGGAGAGGCGGGCGCCAATGGACCGAAGGGA GAGCGAGGCTCCCCCGGCGTCGTCGGGAAGGCAGGACCGGCTGGGCCCAAAGGAGACCGA GGGGAGAAGGGCGCGCGTGGAGAGAAAGGAGAGCCTGGGCAGCTCCAGTCATGTGCCACA GGACCTCGGACCTGCAAGGAGCTGCTGACCAGGGGGCACTTTCTGAGCGGCTGGCACACC ATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTGTGACATGGACACGGATGGCGGG GGGTGGACCGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGACTTCTACCGGGACTGGGCC GCGTACAAGCGGGGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTGGGGAACGACCACATC CACGCCCTGACGGCCCAGGGAACCAGTGAGCTCCGGGTGGACCTCGTGGACTTCGAGGGC AACCACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAGGCAGAGAAGTACAAG CTGGTCCTGGGAGGCTTCCTGGAGGGCAATGCAGGTGACTCCCTGTCGTCCCACAGAGAC CAGTTCTTCTCCACCAAAGACCAGGACAACGACAACCATTCGGGAAACTGCGCGGAGCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 117-239, gnl|bosTau2|chr11 (86696137-86696259) | |
| 117-239, gnl|Hg17|chr9 (135034260-135034138) | |
| 117-239, gnl|Mm7|chr2 (28090338-28090216) | |
| 359-491, gnl|bosTau2|chr11 (86700439-86700571) | |
| 359-491, gnl|Hg17|chr9 (135030937-135030805) | |
| 359-491, gnl|Mm7|chr2 (28087063-28086931) | |
| 619-756, gnl|bosTau2|chr11 (86702034-86702171) | |
| 619-756, gnl|canFam2|chr9 (54228492-54228394) | |
| 619-756, gnl|dasNov1|scaffold_11829 (25042-24938) | |
| 619-756, gnl|echTel1|scaffold_35868 (2929-2816) | |
| 619-756, gnl|galGal2|chr17 (10533500-10533398) | |
| 619-756, gnl|hg17|chr9 (135004193-135004310) | |
| 619-756, gnl|Hg17|chr9 (135029059-135028922) | |
| 619-756, gnl|loxAfr1|scaffold_58084 (2606-2723) | |
| 619-756, gnl|mm7|chr2 (28085728-28085605) | |
| 619-756, gnl|Mm7|chr2 (28085693-28085556) | |
| 619-756, gnl|monDom2|scaffold_1 (188731334-188731229) | |
| 619-756, gnl|panTro1|chr11 (119891987-119892104) | |
| 619-756, gnl|rheMac2|chr15 (3410044-3409927) | |
| 619-756, gnl|rn3|chr3 (7013140-7013017) | |
| 619-756, gnl|tetNig1|chr2 (1051076-1050960) | |
| 619-756, gnl|xenTro1|scaffold_346 (389808-389919) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-239, gnl|bosTau2|chr11 (86696137-86696259) | |
| 117-239, gnl|Hg17|chr9 (135034260-135034138) | |
| 117-239, gnl|Mm7|chr2 (28090338-28090216) | |
| 359-491, gnl|bosTau2|chr11 (86700439-86700571) | |
| 359-491, gnl|Hg17|chr9 (135030937-135030805) | |
| 359-491, gnl|Mm7|chr2 (28087063-28086931) | |
| 619-756, gnl|bosTau2|chr11 (86702034-86702171) | |
| 619-756, gnl|canFam2|chr9 (54228492-54228394) | |
| 619-756, gnl|dasNov1|scaffold_11829 (25042-24938) | |
| 619-756, gnl|echTel1|scaffold_35868 (2929-2816) | |
| 619-756, gnl|galGal2|chr17 (10533500-10533398) | |
| 619-756, gnl|hg17|chr9 (135004193-135004310) | |
| 619-756, gnl|Hg17|chr9 (135029059-135028922) | |
| 619-756, gnl|loxAfr1|scaffold_58084 (2606-2723) | |
| 619-756, gnl|mm7|chr2 (28085728-28085605) | |
| 619-756, gnl|Mm7|chr2 (28085693-28085556) | |
| 619-756, gnl|monDom2|scaffold_1 (188731334-188731229) | |
| 619-756, gnl|panTro1|chr11 (119891987-119892104) | |
| 619-756, gnl|rheMac2|chr15 (3410044-3409927) | |
| 619-756, gnl|rn3|chr3 (7013140-7013017) | |
| 619-756, gnl|tetNig1|chr2 (1051076-1050960) | |
| 619-756, gnl|xenTro1|scaffold_346 (389808-389919) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| jca (0.22792) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nca (0.136874) | |
| cly (0.120642) | |
| clu (0.119646) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.22792) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nca (0.136874) | |
| cly (0.120642) | |
| clu (0.119646) | |
| nbm (0.0993246) |