Ss1.1-Lng1-LNG010024D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCAAGTAGTTTGAAAAATAGGAGTCTGGTACTTTGCAGTACTTAATGATTTGCATCTT TTTTTCCTGCTTGTAGGAAAATTCTGCTTCAAATGTGAACCTCTGATCACTTGGCACTTT ACAAGATGAGTGTGCATCATCCTGGTCTGCCATTTTGTAGTCTTTGCCTCAGGCGCAGGG CCCAACATGGTGGACGTGTGGAAAGAGGTTTGAAGGTCCCTGTCCTTCCCGGCAATAATC AAGAAGACCCCCATCATCACACTGAGGTCTCCTGACTCCAGCTTTGAGGACTTAAGATTC CCCTCAAGAAAGAAGAATGCCAGGGATTGAACCTGCAACCTCACTGTTCCTAGTCGGAAT CGTTAACCACTGCACCATGATGGGAACTCCTCAAAACTTATTTATAAACTAGCCTCTGCA CTGGACTGGTCTATAGAGAGGACTTGCCGCCGCGGCAAGAGCAGCGCAGAGTGGAGTGAC CGCTGGAGATGCCTGAGGTTACTTTTTGAGGAGTGGCCAGCGGCGCAATGGAGCGGGCCA GGGACCGCTTACACCTGAGACGGACCACAGAACAGCACGTACCAGAGGTGGAAGTCCAAG TCAAACGTAGAAGGACAGCTTCACTGAGCAACCAGGAGTGTCAGCTGTATCTGAGGCGAT CTCAGCAGCAGCAACTCCCTGTGGTGGATTTTCAAGCAGAATTGAGACAGGCATTCTTAG CTGAGACACCAAGGGGTGGTTAAAGCAGTATTGCAACACACTCAAGGAGCTGATTCCAAG AGGAAAAAAAAAATCAAAAAAACAGGCTCCATCTACTATTTGAAGCTTCTGCCCCAGCTT GCATTGTTTGTAGGAGAACCTGCATCCTACCTTTATCTGTAGCCTTCCCTTAGGTCTTAA GGATCCTGAAATTTTCCTGTGGACATTGGATTTGGTGGAAAAGCAATCATGACCGTGGGA AAGAGCAGCAAGATGCTGCAGCACATTGACTATAGAATGAGATGTATCCTGCAAGATGGC CGGATCTTCATTGGCACCTTTAAGGCTTTTGACAAGCATATGAACTTGATCCTCTGTGAT TGTGATGAATTCAGGAAGATCAAGCCAAAGAACGCAAAGCAGCCAGAGCGTGAAGAAAAG CGGGTTTTGGGTCTGGTGTTGCTGCGTGGGGAAAATTTGGTTTCCATGACTGTGGAGGGA CCACCCCCCAAAGATACTGGAATTGCTCGTGTACCACTTGCTGGAGCTGCAGGAGGCCCT GGGGTTGGCAGGGCAGCTGGCAGAGGTGTACCAGCTGGTGTTCCAATTCCCCAGGCACCT GCTGGATTAGCAGGTCCTGTCCGAGGGGTTGGGGGGCCATCCCAACAGGTAATGACCCCA CAGGGAAGAGGCACTGTAGCTGCTGCTGCAGTTGCTGCTACTGCCAGCATTGCTGGAGCC CCAACTCAGTATCCACCAGGCCGGGGGACTCCACCCACACCTGTTGGTCGAGCAACCCCA CCTCCAGGAATTATGGCTCCTCCACCTGGTATGAGACCACCAATGGGCCCACCAATCGGA CTTCCTCCTACTCGAGGGACGCCAATAGGCATGCCCCCTCCAGGAATGAGACCCCCTCCA CCAGGAATTAGAGGTCCACCTCCCCCAGGAATGCGTCCACCAAGACCCTAGGATACTGTT GATCCTTCTTAGTCACTTTTTTCCCTGCAATGTGTCTTGTGAAATGTGTGGAGTGTTTGT GAGCTTTTGTCCCCTATTTGCTGCATTAATATTAGCGAATAAATGCATAGAGCAATTAAA CTGTGAGGTACTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCAAGTAGTTTGAAAAATAGGAGTCTGGTACTTTGCAGTACTTAATGATTTGCATCTT TTTTTCCTGCTTGTAGGAAAATTCTGCTTCAAATGTGAACCTCTGATCACTTGGCACTTT ACAAGATGAGTGTGCATCATCCTGGTCTGCCATTTTGTAGTCTTTGCCTCAGGCGCAGGG CCCAACATGGTGGACGTGTGGAAAGAGGTTTGAAGGTCCCTGTCCTTCCCGGCAATAATC AAGAAGACCCCCATCATCACACTGAGGTCTCCTGACTCCAGCTTTGAGGACTTAAGATTC CCCTCAAGAAAGAAGAATGCCAGGGATTGAACCTGCAACCTCACTGTTCCTAGTCGGAAT CGTTAACCACTGCACCATGATGGGAACTCCTCAAAACTTATTTATAAACTAGCCTCTGCA CTGGACTGGTCTATAGAGAGGACTTGCCGCCGCGGCAAGAGCAGCGCAGAGTGGAGTGAC CGCTGGAGATGCCTGAGGTTACTTTTTGAGGAGTGGCCAGCGGCGCAATGGAGCGGGCCA GGGACCGCTTACACCTGAGACGGACCACAGAACAGCACGTACCAGAGGTGGAAGTCCAAG TCAAACGTAGAAGGACAGCTTCACTGAGCAACCAGGAGTGTCAGCTGTATCTGAGGCGAT CTCAGCAGCAGCAACTCCCTGTGGTGGATTTTCAAGCAGAATTGAGACAGGCATTCTTAG CTGAGACACCAAGGGGTGGTTAAAGCAGTATTGCAACACACTCAAGGAGCTGATTCCAAG AGGAAAAAAAAAATCAAAAAAACAGGCTCCATCTACTATTTGAAGCTTCTGCCCCAGCTT GCATTGTTTGTAGGAGAACCTGCATCCTACCTTTATCTGTAGCCTTCCCTTAGGTCTTAA GGATCCTGAAATTTTCCTGTGGACATTGGATTTGGTGGAAAAGCAATCATGACCGTGGGA AAGAGCAGCAAGATGCTGCAGCACATTGACTATAGAATGAGATGTATCCTGCAAGATGGC CGGATCTTCATTGGCACCTTTAAGGCTTTTGACAAGCATATGAACTTGATCCTCTGTGAT TGTGATGAATTCAGGAAGATCAAGCCAAAGAACGCAAAGCAGCCAGAGCGTGAAGAAAAG CGGGTTTTGGGTCTGGTGTTGCTGCGTGGGGAAAATTTGGTTTCCATGACTGTGGAGGGA CCACCCCCCAAAGATACTGGAATTGCTCGTGTACCACTTGCTGGAGCTGCAGGAGGCCCT GGGGTTGGCAGGGCAGCTGGCAGAGGTGTACCAGCTGGTGTTCCAATTCCCCAGGCACCT GCTGGATTAGCAGGTCCTGTCCGAGGGGTTGGGGGGCCATCCCAACAGGTAATGACCCCA CAGGGAAGAGGCACTGTAGCTGCTGCTGCAGTTGCTGCTACTGCCAGCATTGCTGGAGCC CCAACTCAGTATCCACCAGGCCGGGGGACTCCACCCACACCTGTTGGTCGAGCAACCCCA CCTCCAGGAATTATGGCTCCTCCACCTGGTATGAGACCACCAATGGGCCCACCAATCGGA CTTCCTCCTACTCGAGGGACGCCAATAGGCATGCCCCCTCCAGGAATGAGACCCCCTCCA CCAGGAATTAGAGGTCCACCTCCCCCAGGAATGCGTCCACCAAGACCCTAGGATACTGTT GATCCTTCTTAGTCACTTTTTTCCCTGCAATGTGTCTTGTGAAATGTGTGGAGTGTTTGT GAGCTTTTGTCCCCTATTTGCTGCATTAATATTAGCGAATAAATGCATAGAGCAATTAAA CTGTGAGGTACTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 987-1635, - strand, RNAz p=0.764463 | |
| 1216-1469, + strand, RNAz p=0.960342 | |
| 1236-1375, + strand, RNAz p=0.999065 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 987-1635, - strand, RNAz p=0.764463 | |
| 1216-1469, + strand, RNAz p=0.960342 | |
| 1236-1375, + strand, RNAz p=0.999065 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 495-799, gnl|bosTau2|chr16 (24804431-24804735) | |
| 495-799, gnl|Hg17|chrX (138169739-138170032) | |
| 495-799, gnl|Mm7|chr14 (57409070-57408760) | |
| 510-758, gnl|bosTau2|chr10 (49574189-49574435) | |
| 510-758, gnl|Hg17|chrX (138169761-138170007) | |
| 510-758, gnl|Mm7|chr14 (57409070-57408853) | |
| 882-1779, gnl|bosTau2|chr16 (24804738-24805606) | |
| 882-1779, gnl|Hg17|chr15 (22770626-22774793) | |
| 882-1779, gnl|Mm7|chr14 (57408748-57407856) | |
| 951-1104, gnl|bosTau2|chr13 (34132737-34132584) | |
| 951-1104, gnl|canFam2|chr24 (21673748-21673529) | |
| 951-1104, gnl|danRer3|chr21 (20835000-20835188) | |
| 951-1104, gnl|dasNov1|scaffold_41822 (380-595) | |
| 951-1104, gnl|echTel1|scaffold_299251 (7056-7272) | |
| 951-1104, gnl|fr1|chrUn (315641200-315641022) | |
| 951-1104, gnl|galGal2|chr20 (10268068-10267859) | |
| 951-1104, gnl|hg17|chr20 (2396220-2396435) | |
| 951-1104, gnl|Hg17|chr20 (2396405-2396252) | |
| 951-1104, gnl|loxAfr1|scaffold_30405 (8322-8543) | |
| 951-1104, gnl|mm7|chr2 (129917832-129918049) | |
| 951-1104, gnl|Mm7|chr2 (129918020-129917867) | |
| 951-1104, gnl|monDom2|scaffold_35 (25955168-25954951) | |
| 951-1104, gnl|oryCun1|scaffold_172922 (32-241) | |
| 951-1104, gnl|panTro1|chr21 (2388315-2388530) | |
| 951-1104, gnl|rheMac2|chr10 (35775970-35776185) | |
| 951-1104, gnl|rn3|chr3 (117681205-117681420) | |
| 951-1104, gnl|tetNig1|chrUn_random (86411051-86411210) | |
| 951-1104, gnl|xenTro1|scaffold_316 (535459-535628) | |
| 1216-1375, gnl|bosTau2|chr13 (34129101-34128942) | |
| 1216-1375, gnl|canFam2|chr24 (21678247-21678127) | |
| 1216-1375, gnl|danRer3|chr21 (20833499-20833607) | |
| 1216-1375, gnl|dasNov1|scaffold_6209 (54181-54299) | |
| 1216-1375, gnl|echTel1|scaffold_267359 (1426-1539) | |
| 1216-1375, gnl|galGal2|chr20 (10269289-10269169) | |
| 1216-1375, gnl|hg17|chr20 (2392380-2392500) | |
| 1216-1375, gnl|Hg17|chr20 (2392545-2392386) | |
| 1216-1375, gnl|loxAfr1|scaffold_31570 (5158-5038) | |
| 1216-1375, gnl|mm7|chr2 (129914447-129914567) | |
| 1216-1375, gnl|Mm7|chr2 (129914612-129914453) | |
| 1216-1375, gnl|monDom2|scaffold_35 (25959137-25959017) | |
| 1216-1375, gnl|oryCun1|scaffold_203935 (4124-4004) | |
| 1216-1375, gnl|panTro1|chr21 (2384452-2384572) | |
| 1216-1375, gnl|rheMac2|chr10 (35772203-35772323) | |
| 1216-1375, gnl|rn3|chr3 (117677950-117678070) | |
| 1216-1375, gnl|tetNig1|chrUn_random (86410126-86410236) | |
| 1216-1375, gnl|xenTro1|scaffold_316 (534608-534732) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 495-799, gnl|bosTau2|chr16 (24804431-24804735) | |
| 495-799, gnl|Hg17|chrX (138169739-138170032) | |
| 495-799, gnl|Mm7|chr14 (57409070-57408760) | |
| 510-758, gnl|bosTau2|chr10 (49574189-49574435) | |
| 510-758, gnl|Hg17|chrX (138169761-138170007) | |
| 510-758, gnl|Mm7|chr14 (57409070-57408853) | |
| 882-1779, gnl|bosTau2|chr16 (24804738-24805606) | |
| 882-1779, gnl|Hg17|chr15 (22770626-22774793) | |
| 882-1779, gnl|Mm7|chr14 (57408748-57407856) | |
| 951-1104, gnl|bosTau2|chr13 (34132737-34132584) | |
| 951-1104, gnl|canFam2|chr24 (21673748-21673529) | |
| 951-1104, gnl|danRer3|chr21 (20835000-20835188) | |
| 951-1104, gnl|dasNov1|scaffold_41822 (380-595) | |
| 951-1104, gnl|echTel1|scaffold_299251 (7056-7272) | |
| 951-1104, gnl|fr1|chrUn (315641200-315641022) | |
| 951-1104, gnl|galGal2|chr20 (10268068-10267859) | |
| 951-1104, gnl|hg17|chr20 (2396220-2396435) | |
| 951-1104, gnl|Hg17|chr20 (2396405-2396252) | |
| 951-1104, gnl|loxAfr1|scaffold_30405 (8322-8543) | |
| 951-1104, gnl|mm7|chr2 (129917832-129918049) | |
| 951-1104, gnl|Mm7|chr2 (129918020-129917867) | |
| 951-1104, gnl|monDom2|scaffold_35 (25955168-25954951) | |
| 951-1104, gnl|oryCun1|scaffold_172922 (32-241) | |
| 951-1104, gnl|panTro1|chr21 (2388315-2388530) | |
| 951-1104, gnl|rheMac2|chr10 (35775970-35776185) | |
| 951-1104, gnl|rn3|chr3 (117681205-117681420) | |
| 951-1104, gnl|tetNig1|chrUn_random (86411051-86411210) | |
| 951-1104, gnl|xenTro1|scaffold_316 (535459-535628) | |
| 1216-1375, gnl|bosTau2|chr13 (34129101-34128942) | |
| 1216-1375, gnl|canFam2|chr24 (21678247-21678127) | |
| 1216-1375, gnl|danRer3|chr21 (20833499-20833607) | |
| 1216-1375, gnl|dasNov1|scaffold_6209 (54181-54299) | |
| 1216-1375, gnl|echTel1|scaffold_267359 (1426-1539) | |
| 1216-1375, gnl|galGal2|chr20 (10269289-10269169) | |
| 1216-1375, gnl|hg17|chr20 (2392380-2392500) | |
| 1216-1375, gnl|Hg17|chr20 (2392545-2392386) | |
| 1216-1375, gnl|loxAfr1|scaffold_31570 (5158-5038) | |
| 1216-1375, gnl|mm7|chr2 (129914447-129914567) | |
| 1216-1375, gnl|Mm7|chr2 (129914612-129914453) | |
| 1216-1375, gnl|monDom2|scaffold_35 (25959137-25959017) | |
| 1216-1375, gnl|oryCun1|scaffold_203935 (4124-4004) | |
| 1216-1375, gnl|panTro1|chr21 (2384452-2384572) | |
| 1216-1375, gnl|rheMac2|chr10 (35772203-35772323) | |
| 1216-1375, gnl|rn3|chr3 (117677950-117678070) | |
| 1216-1375, gnl|tetNig1|chrUn_random (86410126-86410236) | |
| 1216-1375, gnl|xenTro1|scaffold_316 (534608-534732) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| fhi (1.35662) | |
| fce (1.08637) | |
| ebs (0.94641) | |
| fbs (0.876732) | |
| fcc (0.791139) | |
| hyp (0.714184) | |
| ece (0.687916) | |
| mas (0.42061) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| fli (0.202881) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (1.35662) | |
| fce (1.08637) | |
| ebs (0.94641) | |
| fbs (0.876732) | |
| fcc (0.791139) | |
| hyp (0.714184) | |
| ece (0.687916) | |
| mas (0.42061) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| fli (0.202881) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| spc (0.113366) | |
| eje (0.0988338) |