Non-Coding RNA Search

Ss1.1-Lng1-LNG010025B04.5

Sequence:


               
               AAAAAAAAAAAAAGAAAAAAGAGAGAGAGAGAGAGAAACTTTCCTGTTTTCCCTGAAATG
AATGTCAGATTGTTCGATAGTGGTCCTTTGCATTTGTATGGGGCTTTATGGTTTTCAGAG
CAGTTTTATAAACATTTTTTTTCATTTTTTTTTCCCTCACTATAATGCCAGAGAAAGGCA
GGGCAGAGATTCTCAGACTCAGTTTTTAGGATAAGAAAAAAAGTGGGGGCTCAAATTGAT
GATGTAATTTCCCTAAGATTCCCCATACAGCAGCCTAACTGGGTCAGAGACTCCTACGAA
AGAATATTCGACTGACTGGCAGGAATGTATGTTCCAGCTTTTGCACTGGTGCTTTGCAGA
GTGCATGATCAATGAAAGTTTGCTGAATGAATGAATGAAAAGACATATAGAACCACGCCA
AGCCCGTGGGGCATTCACTGAAAGCCTTCAGCAGAATTACCTGAAGGAAATCACTTCTGA
TGTTCTTTAGACCAAAGGACCCTGATTCTTTTGAGGGTAAAGAAAAGGCTAAGGCTGGTG
ACCAGTAGGTTGTTGGGGAGGGACCCTCATATTCTTATTTGAAGCAGGCAGGAAAGGGAG
ATGGAGGCAGAGAACTGAACTCCGGTTGTAACTCTGGCTGACTCCTCTAGCAAACTGATG
TATTGTCTGAAAGGGTCTCCTCCAGCCAGCACTTGGGAAATTGAAATTAAGAACTGTGAC
AAATATGTCTGTTATGCCCATCTGCTTTAAATAGCATTCACCCTTTGTTTTACTTCAATA
CACATGCAAAATGGACCTTACTGGAGTTCCCTGGTGGATTAAGGTTCAGGTTCAGGTTTA
GACGTCGTCACTCTGTGGTGTGGGCTCAATCCCCGGACTGGGACTTCCACCTGCTGTGGG
TGCGGACAACACCACCAAAAGATATTATTGGTATAACCAAAGTTTTATTGTTCTAGCATC
ATCATGATCATGATGAAATTTACATTCCAGAAACTAAAATCCCTAGCTGGCTGTGTAGAT
ATTAAATTCGTACCTGATAGAAGGTTCTGGACATCTGTGAGTTTGAGAGTCACTAAATCA
TTGTTAGTGTGGCCAGAGTTCTTTTTTTCCCCTCAGAACTGCTCCTATTTCTGGGAACTA
AAATCAGCTTTATTTGTTACATCCTCTGGGGGCCACAAATATTTAGAACATTCGCTTTGA
TATGAGGAAGAAAGAGAAGGGGGCGGGGGAGAGGCAGAAGATGGTGTTGGGAGGAAAGGG
GAGGGAAGGGGAAAAGAGAATAGATGGAAAGTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAGAAAAAAGAGAGAGAGAGAGAGAAACTTTCCTGTTTTCCCTGAAATG
AATGTCAGATTGTTCGATAGTGGTCCTTTGCATTTGTATGGGGCTTTATGGTTTTCAGAG
CAGTTTTATAAACATTTTTTTTCATTTTTTTTTCCCTCACTATAATGCCAGAGAAAGGCA
GGGCAGAGATTCTCAGACTCAGTTTTTAGGATAAGAAAAAAAGTGGGGGCTCAAATTGAT
GATGTAATTTCCCTAAGATTCCCCATACAGCAGCCTAACTGGGTCAGAGACTCCTACGAA
AGAATATTCGACTGACTGGCAGGAATGTATGTTCCAGCTTTTGCACTGGTGCTTTGCAGA
GTGCATGATCAATGAAAGTTTGCTGAATGAATGAATGAAAAGACATATAGAACCACGCCA
AGCCCGTGGGGCATTCACTGAAAGCCTTCAGCAGAATTACCTGAAGGAAATCACTTCTGA
TGTTCTTTAGACCAAAGGACCCTGATTCTTTTGAGGGTAAAGAAAAGGCTAAGGCTGGTG
ACCAGTAGGTTGTTGGGGAGGGACCCTCATATTCTTATTTGAAGCAGGCAGGAAAGGGAG
ATGGAGGCAGAGAACTGAACTCCGGTTGTAACTCTGGCTGACTCCTCTAGCAAACTGATG
TATTGTCTGAAAGGGTCTCCTCCAGCCAGCACTTGGGAAATTGAAATTAAGAACTGTGAC
AAATATGTCTGTTATGCCCATCTGCTTTAAATAGCATTCACCCTTTGTTTTACTTCAATA
CACATGCAAAATGGACCTTACTGGAGTTCCCTGGTGGATTAAGGTTCAGGTTCAGGTTTA
GACGTCGTCACTCTGTGGTGTGGGCTCAATCCCCGGACTGGGACTTCCACCTGCTGTGGG
TGCGGACAACACCACCAAAAGATATTATTGGTATAACCAAAGTTTTATTGTTCTAGCATC
ATCATGATCATGATGAAATTTACATTCCAGAAACTAAAATCCCTAGCTGGCTGTGTAGAT
ATTAAATTCGTACCTGATAGAAGGTTCTGGACATCTGTGAGTTTGAGAGTCACTAAATCA
TTGTTAGTGTGGCCAGAGTTCTTTTTTTCCCCTCAGAACTGCTCCTATTTCTGGGAACTA
AAATCAGCTTTATTTGTTACATCCTCTGGGGGCCACAAATATTTAGAACATTCGCTTTGA
TATGAGGAAGAAAGAGAAGGGGGCGGGGGAGAGGCAGAAGATGGTGTTGGGAGGAAAGGG
GAGGGAAGGGGAAAAGAGAATAGATGGAAAGTGAGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-259, gnl|bosTau2|chrX (34351161-34350915)
               

               
               15-259, gnl|Hg17|chrX (37426475-37426719)
               

               
               15-259, gnl|Mm7|chrX (7871297-7871047)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-259, gnl|bosTau2|chrX (34351161-34350915)
               

               
               15-259, gnl|Hg17|chrX (37426475-37426719)
               

               
               15-259, gnl|Mm7|chrX (7871297-7871047)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cty (0.20816)
               

               
               sto (0.179824)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               sto (0.179824)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	15-259, gnl\|bosTau2\|chrX (34351161-34350915)
	15-259, gnl\|Hg17\|chrX (37426475-37426719)
	15-259, gnl\|Mm7\|chrX (7871297-7871047)

	cty (0.20816)
	sto (0.179824)
	cag (0.151194)
	spl (0.143184)
	lnt (0.142308)
	cst (0.140036)
	che (0.136314)
	clu (0.119646)
	jca (0.11396)
	spc (0.113366)