Ss1.1-Lng1-LNG010025G10.5
|
CACGTGGGGACACAGCGTGTTCCATTCTTTGTGCTGGGGTGAGGAGGAGCTTGACTAGAC
TCAAGCAGGCAACGCGGTAGAAACACTGCTTCGGTGGGCGACGTGGAACTGCTACAGAAG
GGCGTTTATTACAGTGATGCCGAAACGTGGGAAAAAAGCCGCGGTGGCAGAAGATGGGGA
TGAGCCCAAGTCTGAGCCAGAAGCCAAGAAGAGTAAGGCGGGAGCAAAGAAAACCGAAAA
AGAGGCAGCAGGTGATGGGGCAGTCCTGTATGAGGACCCCCCAGATCAGAAAACCTCACC
CAGTGGCAAATCAGCCACACTCAAAATCTGCTCCTGGAATGTGGATGGGCTTCGAGCTTG
GATTAAGAAAAAAGGTTTAGATTGGGTAAAGGAAGAAGCCCCAGATATCCTGTGCCTCCA
AGAGACCAAATGTTCAGAGAACAAACTGCCAGCTGAACTTCAAGAGCTGTCTGGACTACC
CCATCAGTACTGGTCAGCTCCTTCTGACAAGGAAGGGTACAGTGGTGTGGGCCTGCTCTC
CCGCCAGTGCCCACTCAAAGTCTCCTATGGCATTGGTGAGGAGGAACATGATCAGGAAGG
CCGAGTGATTGTGGCTGAATTTGATGCATTTGTGCTGGTGACAGCCTATGTACCCAATGC
AGGCCGAGGTCTGGTACGCCTGGAGTACCGCCAGCGCTGGGATGAAGCCTTTCGCAAATT
CCTGAAGGGTCTGGCCTCCCACAAGCCCCTTGTGCTCTGTGGGGACCTTAATGTGGCTCA
TGAAGAAATTGACCTTCGCAACCCAAAGGGAAACAAAAAGAATGCTGGCTTCACTCCACA
GGAACGTCAAGGCTTTGGGGAATTGCTGCAGGCTGTGCCACTGGCTGACAGTTTCCGGCA
CCTCTACCCCAACACGGCGTATGCCTACACCTTTTGGACCTACATGATGAATGCGCGATC
TAAAAATGTTGGATGGCGGCTTGATTATTTTTTGTTGTCTCACTCTCTGTTGCCTGCATT
GTGTGACAGCAAGATCCGTTCCAAGGCTCTGGGTAGTGACCACTGTCCCATTACTCTATA
CCTAGCACTGTGACCTTTCCCCAAATCAGTTTGAGCCTGGGATATAAGCCAATCAAACTA
GCTTTAAACTTCTTACGCCCAAACTTCTTTAAAAACTGCTCTCTAGAGAAATCTGCACTG
TATTTTCCTTCTCTGCAGCTTTTATTAACCAGGCTTGTAACAGATGTAGGTTTCCTTTAA
ACCCAAGGATTTTTGTGTGTGTTGGGATGTCTTTTTTTTTTTAATATTAAAAACTACTGA
TGAGTTCCTTTGAAATGCCCATGTGAAAATAAAAAGCCATAGTTTCAGCAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACGTGGGGACACAGCGTGTTCCATTCTTTGTGCTGGGGTGAGGAGGAGCTTGACTAGAC
TCAAGCAGGCAACGCGGTAGAAACACTGCTTCGGTGGGCGACGTGGAACTGCTACAGAAG
GGCGTTTATTACAGTGATGCCGAAACGTGGGAAAAAAGCCGCGGTGGCAGAAGATGGGGA
TGAGCCCAAGTCTGAGCCAGAAGCCAAGAAGAGTAAGGCGGGAGCAAAGAAAACCGAAAA
AGAGGCAGCAGGTGATGGGGCAGTCCTGTATGAGGACCCCCCAGATCAGAAAACCTCACC
CAGTGGCAAATCAGCCACACTCAAAATCTGCTCCTGGAATGTGGATGGGCTTCGAGCTTG
GATTAAGAAAAAAGGTTTAGATTGGGTAAAGGAAGAAGCCCCAGATATCCTGTGCCTCCA
AGAGACCAAATGTTCAGAGAACAAACTGCCAGCTGAACTTCAAGAGCTGTCTGGACTACC
CCATCAGTACTGGTCAGCTCCTTCTGACAAGGAAGGGTACAGTGGTGTGGGCCTGCTCTC
CCGCCAGTGCCCACTCAAAGTCTCCTATGGCATTGGTGAGGAGGAACATGATCAGGAAGG
CCGAGTGATTGTGGCTGAATTTGATGCATTTGTGCTGGTGACAGCCTATGTACCCAATGC
AGGCCGAGGTCTGGTACGCCTGGAGTACCGCCAGCGCTGGGATGAAGCCTTTCGCAAATT
CCTGAAGGGTCTGGCCTCCCACAAGCCCCTTGTGCTCTGTGGGGACCTTAATGTGGCTCA
TGAAGAAATTGACCTTCGCAACCCAAAGGGAAACAAAAAGAATGCTGGCTTCACTCCACA
GGAACGTCAAGGCTTTGGGGAATTGCTGCAGGCTGTGCCACTGGCTGACAGTTTCCGGCA
CCTCTACCCCAACACGGCGTATGCCTACACCTTTTGGACCTACATGATGAATGCGCGATC
TAAAAATGTTGGATGGCGGCTTGATTATTTTTTGTTGTCTCACTCTCTGTTGCCTGCATT
GTGTGACAGCAAGATCCGTTCCAAGGCTCTGGGTAGTGACCACTGTCCCATTACTCTATA
CCTAGCACTGTGACCTTTCCCCAAATCAGTTTGAGCCTGGGATATAAGCCAATCAAACTA
GCTTTAAACTTCTTACGCCCAAACTTCTTTAAAAACTGCTCTCTAGAGAAATCTGCACTG
TATTTTCCTTCTCTGCAGCTTTTATTAACCAGGCTTGTAACAGATGTAGGTTTCCTTTAA
ACCCAAGGATTTTTGTGTGTGTTGGGATGTCTTTTTTTTTTTAATATTAAAAACTACTGA
TGAGTTCCTTTGAAATGCCCATGTGAAAATAAAAAGCCATAGTTTCAGCAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
194-382, gnl|bosTau2|chr10 (16376310-16376122) |
|
194-382, gnl|Hg17|chr14 (19993912-19994100) |
|
194-382, gnl|Mm7|chr14 (46259413-46259601) |
| |
|
575-1369, gnl|bosTau2|chr10 (16375273-16374468) |
|
575-1369, gnl|canFam2|chr15 (20793519-20794058) |
|
575-1369, gnl|danRer3|chr4 (3189908-3190428) |
|
575-1369, gnl|echTel1|scaffold_285126 (41757-41215) |
|
575-1369, gnl|fr1|chrUn (309734997-309735530) |
|
575-1369, gnl|hg17|chr14 (19994976-19995515) |
|
575-1369, gnl|Hg17|chr14 (19994989-19995768) |
|
575-1369, gnl|mm7|chr14 (46260343-46260877) |
|
575-1369, gnl|Mm7|chr14 (46260352-46261038) |
|
575-1369, gnl|monDom2|scaffold_12 (30391381-30390844) |
|
575-1369, gnl|oryCun1|scaffold_209961 (28581-29123) |
|
575-1369, gnl|panTro1|chrUn_random (21332090-21332629) |
|
575-1369, gnl|rheMac2|chr7 (83161667-83162206) |
|
575-1369, gnl|rn3|chr15 (26921243-26921779) |
|
575-1369, gnl|tetNig1|chrUn_random (25393631-25393105) |
|
575-1369, gnl|xenTro1|scaffold_339 (1206253-1206801) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
194-382, gnl|bosTau2|chr10 (16376310-16376122) |
|
194-382, gnl|Hg17|chr14 (19993912-19994100) |
|
194-382, gnl|Mm7|chr14 (46259413-46259601) |
| |
|
575-1369, gnl|bosTau2|chr10 (16375273-16374468) |
|
575-1369, gnl|canFam2|chr15 (20793519-20794058) |
|
575-1369, gnl|danRer3|chr4 (3189908-3190428) |
|
575-1369, gnl|echTel1|scaffold_285126 (41757-41215) |
|
575-1369, gnl|fr1|chrUn (309734997-309735530) |
|
575-1369, gnl|hg17|chr14 (19994976-19995515) |
|
575-1369, gnl|Hg17|chr14 (19994989-19995768) |
|
575-1369, gnl|mm7|chr14 (46260343-46260877) |
|
575-1369, gnl|Mm7|chr14 (46260352-46261038) |
|
575-1369, gnl|monDom2|scaffold_12 (30391381-30390844) |
|
575-1369, gnl|oryCun1|scaffold_209961 (28581-29123) |
|
575-1369, gnl|panTro1|chrUn_random (21332090-21332629) |
|
575-1369, gnl|rheMac2|chr7 (83161667-83162206) |
|
575-1369, gnl|rn3|chr15 (26921243-26921779) |
|
575-1369, gnl|tetNig1|chrUn_random (25393631-25393105) |
|
575-1369, gnl|xenTro1|scaffold_339 (1206253-1206801) |
|
nbm (0.993246) |
|
ova (0.645661) |
|
spc (0.566829) |
|
fat (0.442282) |
|
elu (0.385356) |
|
fhi (0.339155) |
|
cty (0.31224) |
|
sme (0.305437) |
|
ldo (0.291008) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ese (0.253004) |
|
bla (0.248694) |
|
pan (0.23596) |
|
med (0.232504) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nep (0.183925) |
|
gul (0.177588) |
|
eye (0.170503) |
|
csp (0.161186) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
tra (0.123092) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
nbm (0.993246) |
|
ova (0.645661) |
|
spc (0.566829) |
|
fat (0.442282) |
|
elu (0.385356) |
|
fhi (0.339155) |
|
cty (0.31224) |
|
sme (0.305437) |
|
ldo (0.291008) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ese (0.253004) |
|
bla (0.248694) |
|
pan (0.23596) |
|
med (0.232504) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nep (0.183925) |
|
gul (0.177588) |
|
eye (0.170503) |
|
csp (0.161186) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
tra (0.123092) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
jej (0.0989218) |
