Ss1.1-Lng1-LNG010025H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAAGGGGCCTCCGGTCTTTGACTTGCTCCGGGAGAAAGTGGGGACCTTTGAGACTCGG GGTTGGGGCGATGGCGCTTCGCTGGGGCATCGTGTCAGCCGGCCTTATCTCCAGCGACTT CACGACGGTGCTGCGGCTGCTGCCTCGCTCTGAGCACCAGGTGGTGGCGGTAGCGGCCCG GGATCTGAGCCGGGCAAAGGAGTTTGCGCGGAAACACGACATCCCCAAGGCCTATGGCTC CTATGAGGAACTGGCCAAGGACCCGAACGTGGAGGTGGCCTATATTGGCACCCAGCACCC CCAGCACAAGGCCACGGTGTTGCTTTGCCTGGCAGCTGGCAAGGCCGTGCTGTGCGAGAA GCCCATGGGCGTGAACGCCGCGGAAGTGCGTGAAATGGTTGCCGAGGCCCGATCCCGAGG CCTCTTCCTAATGGAGGCCATCTGGACCCGCTTCTTTCCTGCTGTAGAGGCTCTGAGGTC TGTTCTGGCCCAGGAAACTCTGGGGGACCTACGAGTGGTTCAGGCAAATTTTGGGAAGAG TATCGCCAATGTACCCCGATCCGTAGACTGGGCCCAGGCTGGAGGTAGCTTGCTAGACCT TGGCATCTACTGCCTCCAGTTCATCTCCATGGTCTACGGTGGGCAGAAGCCAGAGAAGAT CTCGGCGGTGGGAAGGCGCTATGAAACAGGTGTGGACGACACGGTCAGCGTGCTACTCCA GTACCCAGGAGGGGTCCAGGGCAGCTTCACCTGCAGCATCACTTCCCAGCTCTCCAATAC AGTCTCTGTGAGCGGTACCAAGGGCATGGCCCAGATCCTCGACCCCTGCTGGTGCCCAAC AGAGCTGGTGGTGAAGGGGGAGCATAAGGAGTTCCCACTGCCCTCAGCCCCAGGCGAGGA GTTCAATTATACAAATGGAATGGGCATGTGTTACGAGGCCAAGCACGTCCGGGAATGCTT GAAGAAGGGCCTGAAGGAAAGCCCTATGATTACTCTGGCTGAAAGTGAGCTCCTGGCTGA CATCCTTGAGGAGGTGAGGAAGGCTATTGGAGTCACCTTCCCCCAGGATAAATGCTGATA TATACCCTGAATAAATAAAGATGTGCTTTCCACAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAAGGGGCCTCCGGTCTTTGACTTGCTCCGGGAGAAAGTGGGGACCTTTGAGACTCGG GGTTGGGGCGATGGCGCTTCGCTGGGGCATCGTGTCAGCCGGCCTTATCTCCAGCGACTT CACGACGGTGCTGCGGCTGCTGCCTCGCTCTGAGCACCAGGTGGTGGCGGTAGCGGCCCG GGATCTGAGCCGGGCAAAGGAGTTTGCGCGGAAACACGACATCCCCAAGGCCTATGGCTC CTATGAGGAACTGGCCAAGGACCCGAACGTGGAGGTGGCCTATATTGGCACCCAGCACCC CCAGCACAAGGCCACGGTGTTGCTTTGCCTGGCAGCTGGCAAGGCCGTGCTGTGCGAGAA GCCCATGGGCGTGAACGCCGCGGAAGTGCGTGAAATGGTTGCCGAGGCCCGATCCCGAGG CCTCTTCCTAATGGAGGCCATCTGGACCCGCTTCTTTCCTGCTGTAGAGGCTCTGAGGTC TGTTCTGGCCCAGGAAACTCTGGGGGACCTACGAGTGGTTCAGGCAAATTTTGGGAAGAG TATCGCCAATGTACCCCGATCCGTAGACTGGGCCCAGGCTGGAGGTAGCTTGCTAGACCT TGGCATCTACTGCCTCCAGTTCATCTCCATGGTCTACGGTGGGCAGAAGCCAGAGAAGAT CTCGGCGGTGGGAAGGCGCTATGAAACAGGTGTGGACGACACGGTCAGCGTGCTACTCCA GTACCCAGGAGGGGTCCAGGGCAGCTTCACCTGCAGCATCACTTCCCAGCTCTCCAATAC AGTCTCTGTGAGCGGTACCAAGGGCATGGCCCAGATCCTCGACCCCTGCTGGTGCCCAAC AGAGCTGGTGGTGAAGGGGGAGCATAAGGAGTTCCCACTGCCCTCAGCCCCAGGCGAGGA GTTCAATTATACAAATGGAATGGGCATGTGTTACGAGGCCAAGCACGTCCGGGAATGCTT GAAGAAGGGCCTGAAGGAAAGCCCTATGATTACTCTGGCTGAAAGTGAGCTCCTGGCTGA CATCCTTGAGGAGGTGAGGAAGGCTATTGGAGTCACCTTCCCCCAGGATAAATGCTGATA TATACCCTGAATAAATAAAGATGTGCTTTCCACAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 511-630, + strand, RNAz p=0.534922 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 511-630, + strand, RNAz p=0.534922 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 7-162, gnl|bosTau2|chr18 (48104580-48104735) | |
| 7-162, gnl|Hg17|chr19 (54128727-54128882) | |
| 432-691, gnl|bosTau2|chr18 (48110229-48110488) | |
| 432-691, gnl|canFam2|chr1 (110328354-110328072) | |
| 432-691, gnl|danRer3|chr9 (1897883-1897556) | |
| 432-691, gnl|dasNov1|scaffold_60254 (534-289) | |
| 432-691, gnl|echTel1|scaffold_273157 (2964-3249) | |
| 432-691, gnl|fr1|chrUn (204702484-204702761) | |
| 432-691, gnl|hg17|chr19 (54134504-54134786) | |
| 432-691, gnl|Hg17|chr19 (54134513-54134772) | |
| 432-691, gnl|loxAfr1|scaffold_61542 (5285-5003) | |
| 432-691, gnl|mm7|chr7 (41657785-41657514) | |
| 432-691, gnl|Mm7|chr7 (41657774-41657515) | |
| 432-691, gnl|monDom2|scaffold_105 (4175847-4176129) | |
| 432-691, gnl|oryCun1|scaffold_138883 (398-123) | |
| 432-691, gnl|panTro1|chr20 (51555850-51556132) | |
| 432-691, gnl|rheMac2|chr19 (55226826-55227108) | |
| 432-691, gnl|rn3|chr1 (96031255-96030973) | |
| 432-691, gnl|tetNig1|chr2 (13036566-13036855) | |
| 432-691, gnl|xenTro1|scaffold_250 (990188-989918) | |
| 812-969, gnl|bosTau2|chr18 (48114878-48115035) | |
| 812-969, gnl|canFam2|chr1 (110322338-110322171) | |
| 812-969, gnl|danRer3|chr9 (1890415-1890278) | |
| 812-969, gnl|dasNov1|scaffold_61581 (739-573) | |
| 812-969, gnl|echTel1|scaffold_273157 (9526-9690) | |
| 812-969, gnl|fr1|chrUn (204703500-204703661) | |
| 812-969, gnl|hg17|chr19 (54139416-54139580) | |
| 812-969, gnl|Hg17|chr19 (54139423-54139577) | |
| 812-969, gnl|loxAfr1|scaffold_19191 (12131-11967) | |
| 812-969, gnl|mm7|chr7 (41651492-41651331) | |
| 812-969, gnl|Mm7|chr7 (41651483-41651332) | |
| 812-969, gnl|monDom2|scaffold_105 (4176404-4176574) | |
| 812-969, gnl|oryCun1|scaffold_198628 (1610-1777) | |
| 812-969, gnl|panTro1|chr20 (51560788-51560952) | |
| 812-969, gnl|rheMac2|chr19 (55231573-55231737) | |
| 812-969, gnl|rn3|chr1 (96026260-96026099) | |
| 812-969, gnl|tetNig1|chr2 (13037233-13037397) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-162, gnl|bosTau2|chr18 (48104580-48104735) | |
| 7-162, gnl|Hg17|chr19 (54128727-54128882) | |
| 432-691, gnl|bosTau2|chr18 (48110229-48110488) | |
| 432-691, gnl|canFam2|chr1 (110328354-110328072) | |
| 432-691, gnl|danRer3|chr9 (1897883-1897556) | |
| 432-691, gnl|dasNov1|scaffold_60254 (534-289) | |
| 432-691, gnl|echTel1|scaffold_273157 (2964-3249) | |
| 432-691, gnl|fr1|chrUn (204702484-204702761) | |
| 432-691, gnl|hg17|chr19 (54134504-54134786) | |
| 432-691, gnl|Hg17|chr19 (54134513-54134772) | |
| 432-691, gnl|loxAfr1|scaffold_61542 (5285-5003) | |
| 432-691, gnl|mm7|chr7 (41657785-41657514) | |
| 432-691, gnl|Mm7|chr7 (41657774-41657515) | |
| 432-691, gnl|monDom2|scaffold_105 (4175847-4176129) | |
| 432-691, gnl|oryCun1|scaffold_138883 (398-123) | |
| 432-691, gnl|panTro1|chr20 (51555850-51556132) | |
| 432-691, gnl|rheMac2|chr19 (55226826-55227108) | |
| 432-691, gnl|rn3|chr1 (96031255-96030973) | |
| 432-691, gnl|tetNig1|chr2 (13036566-13036855) | |
| 432-691, gnl|xenTro1|scaffold_250 (990188-989918) | |
| 812-969, gnl|bosTau2|chr18 (48114878-48115035) | |
| 812-969, gnl|canFam2|chr1 (110322338-110322171) | |
| 812-969, gnl|danRer3|chr9 (1890415-1890278) | |
| 812-969, gnl|dasNov1|scaffold_61581 (739-573) | |
| 812-969, gnl|echTel1|scaffold_273157 (9526-9690) | |
| 812-969, gnl|fr1|chrUn (204703500-204703661) | |
| 812-969, gnl|hg17|chr19 (54139416-54139580) | |
| 812-969, gnl|Hg17|chr19 (54139423-54139577) | |
| 812-969, gnl|loxAfr1|scaffold_19191 (12131-11967) | |
| 812-969, gnl|mm7|chr7 (41651492-41651331) | |
| 812-969, gnl|Mm7|chr7 (41651483-41651332) | |
| 812-969, gnl|monDom2|scaffold_105 (4176404-4176574) | |
| 812-969, gnl|oryCun1|scaffold_198628 (1610-1777) | |
| 812-969, gnl|panTro1|chr20 (51560788-51560952) | |
| 812-969, gnl|rheMac2|chr19 (55231573-55231737) | |
| 812-969, gnl|rn3|chr1 (96026260-96026099) | |
| 812-969, gnl|tetNig1|chr2 (13037233-13037397) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cov (0.396458) | |
| fce (0.271592) | |
| jej (0.197844) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| fce (0.271592) | |
| jej (0.197844) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |