Non-Coding RNA Search

Ss1.1-Lng1-LNG010026A04.5

Sequence:


               
               CTCTCCTGCACTTTCACAACACACCAGAGAAAAACTCTGTAAGGCATGTTTTCCACTGTG
AAGCTGACCCTCTACCTTTAGGGGTTCCCTAAGCCTGCGCCTGGACTTAGACTAGACTCC
CTGGAAAGTGGGCACCCGGAGAGCTGTCACACCGTCTCGGGGCCACAGGTTCACAAGAAA
GGTTTGGAATGAAGCAGGGGTGCGGATGGAGAAGGGCGATCCCATGAGACGTGGCCCAGG
AGGGGACCATGCCTGGATGTTGCCGTCACGATAGATGCGCTCGCTGAGACGGGACGAGGA
GGCACCCAGGGCACGGCTGGCAGCCTCCTCCTGCCCCACTGAGCCAGGGCAGGTGCACAG
CTCTGTCCTTGCCTTGGGAACGGCAGCAACACCTCTGTCCATGGGACATCCCTGATGGAG
GGCTTCTAGAAAGGCTGCTGGTTTCGACAAAACCAAGCAGCTAAGTAAGGCTCAGGCTGT
GCCCTGGAGACAGTAGGTGGAGGGCTCCAGTCTCGGGCCTGCAGCCCCGCCCTGGCCCTC
TGTATCCAGCTGGGCCAGTGGGAGAACTGGGAAGGGGCCCGCCCCCTCGTCACTGTGGCT
AAAGTTTGCTAGGCCAGTTATGGTGAACCAATGATGCGGTGTTTTCCCCCCGTGTTTCCC
TCCCAGTTTGCCCTTTGCAGGGTTCTCTGGAGGATTTTGTTGTCACTGTTGTTGTTGTTT
CTTTCTCTTTTGTTTGGGTTTGAGGATCGTGGTCAGTGGAGCCCAGCCTTTCCCTGAAGG
GGCCCTGTGGTTTCTGGGCAGAGAGGCACCTGCTCCCGCTTTGATGAGGGTGAAGGGCGT
CGGGTTGCTGTGTGGTCTGTTCATGTCCCACCACCGCCACGGGCGTCGCTTTAACGATCC
AACTCCTGTACAGAGAAGGATTTGCTAGGTTGGCAGCTGGGTGTCAGCATCAGGATCCCA
GGGGTCCTTCCCCACCCACGCGTCCCACCTCCGGGCACCTCGACTCTTCGAACCAAAGTT
CCTTAAAGGGGCACAGCCCAGCCTTGTCCGCAACCTCAGGGGCCCGGCATCCCTGTGGCA
CTTCCGGAAGTCCAGGGTGGCAGAGACCGAGGGGCCTGAGGCCATCCGGAAGTGGGGGGG
GGGGGGTCCTGCCCACACCCAGGTGCCAGCCGGTCCCCTCTCGGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCCTGCACTTTCACAACACACCAGAGAAAAACTCTGTAAGGCATGTTTTCCACTGTG
AAGCTGACCCTCTACCTTTAGGGGTTCCCTAAGCCTGCGCCTGGACTTAGACTAGACTCC
CTGGAAAGTGGGCACCCGGAGAGCTGTCACACCGTCTCGGGGCCACAGGTTCACAAGAAA
GGTTTGGAATGAAGCAGGGGTGCGGATGGAGAAGGGCGATCCCATGAGACGTGGCCCAGG
AGGGGACCATGCCTGGATGTTGCCGTCACGATAGATGCGCTCGCTGAGACGGGACGAGGA
GGCACCCAGGGCACGGCTGGCAGCCTCCTCCTGCCCCACTGAGCCAGGGCAGGTGCACAG
CTCTGTCCTTGCCTTGGGAACGGCAGCAACACCTCTGTCCATGGGACATCCCTGATGGAG
GGCTTCTAGAAAGGCTGCTGGTTTCGACAAAACCAAGCAGCTAAGTAAGGCTCAGGCTGT
GCCCTGGAGACAGTAGGTGGAGGGCTCCAGTCTCGGGCCTGCAGCCCCGCCCTGGCCCTC
TGTATCCAGCTGGGCCAGTGGGAGAACTGGGAAGGGGCCCGCCCCCTCGTCACTGTGGCT
AAAGTTTGCTAGGCCAGTTATGGTGAACCAATGATGCGGTGTTTTCCCCCCGTGTTTCCC
TCCCAGTTTGCCCTTTGCAGGGTTCTCTGGAGGATTTTGTTGTCACTGTTGTTGTTGTTT
CTTTCTCTTTTGTTTGGGTTTGAGGATCGTGGTCAGTGGAGCCCAGCCTTTCCCTGAAGG
GGCCCTGTGGTTTCTGGGCAGAGAGGCACCTGCTCCCGCTTTGATGAGGGTGAAGGGCGT
CGGGTTGCTGTGTGGTCTGTTCATGTCCCACCACCGCCACGGGCGTCGCTTTAACGATCC
AACTCCTGTACAGAGAAGGATTTGCTAGGTTGGCAGCTGGGTGTCAGCATCAGGATCCCA
GGGGTCCTTCCCCACCCACGCGTCCCACCTCCGGGCACCTCGACTCTTCGAACCAAAGTT
CCTTAAAGGGGCACAGCCCAGCCTTGTCCGCAACCTCAGGGGCCCGGCATCCCTGTGGCA
CTTCCGGAAGTCCAGGGTGGCAGAGACCGAGGGGCCTGAGGCCATCCGGAAGTGGGGGGG
GGGGGGTCCTGCCCACACCCAGGTGCCAGCCGGTCCCCTCTCGGGACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               289-448, + strand, RNAz p=0.99495
               

               
               1065-1188, - strand, RNAz p=0.807712

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-448, + strand, RNAz p=0.99495
               

               
               1065-1188, - strand, RNAz p=0.807712

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               330-406, + strand, RNAmicro p=0.99512
               

               
               1134-1243, + strand, RNAmicro p=0.973077

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               330-406, + strand, RNAmicro p=0.99512
               

               
               1134-1243, + strand, RNAmicro p=0.973077

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-541, gnl|bosTau2|chr8 (58219022-58219571)
               

               
               1-541, gnl|Hg17|chr9 (113895917-113896434)
               


               
               581-1188, gnl|bosTau2|chr8 (58219565-58220160)
               

               
               581-1188, gnl|Hg17|chr9 (113896428-113897093)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-541, gnl|bosTau2|chr8 (58219022-58219571)
               

               
               1-541, gnl|Hg17|chr9 (113895917-113896434)
               


               
               581-1188, gnl|bosTau2|chr8 (58219565-58220160)
               

               
               581-1188, gnl|Hg17|chr9 (113896428-113897093)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	289-448, + strand, RNAz p=0.99495
	1065-1188, - strand, RNAz p=0.807712

	330-406, + strand, RNAmicro p=0.99512
	1134-1243, + strand, RNAmicro p=0.973077

	1-541, gnl\|bosTau2\|chr8 (58219022-58219571)
	1-541, gnl\|Hg17\|chr9 (113895917-113896434)

	581-1188, gnl\|bosTau2\|chr8 (58219565-58220160)
	581-1188, gnl\|Hg17\|chr9 (113896428-113897093)