Ss1.1-Lng1-LNG010026C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCAGCTGGCTGCGGAAGGACCACTCCGCCTCCAAGGAGGACTACATGGATCGCCTGGA GCACCTGCGGAGGCAGTGTGGGCCCCACGTCTCGGCCGCAGCCAAGGACTCTGTGGAAGG CATCTGTAGTAAGATCTACCACATCTCCCTGGAGTATGTCAAACGGATCCGAGAGAAGCA CCTTGCCATCCTCAAGGAAAACAACATCCCAGAGGAGGTGGAGGCCCCCGAGGTGGAGCC CCGCCTGGTGTACTGCTACCCAGTGCGGCTGGCCGTGTCTGCACCCCCCATGCCCAGCGT GGAGATGCACATGGAGAACAGCGTGGTCTGCATCCGGTACAAGGGCGAGATGGTCAAGGT CAGCCGCAACTACTTCAGCAAGCTGTGGCTCCTTTACCGCTACAGCTGCATTGACGACTC TGCCTTTGAGAGGTTCCTGCCCCGAGTCTGGTGTCTTCTCCGACGGTACCAGATGATGTT TGGCGTGGGCCTCTACGAGGGGACAGGCCTGCAGGGATCGCTGCCCGTGCACGTCTTCGA GGCCCTCCACCGACTTTTTGGCGTCAGCTTTGAGTGCTTTGCCTCACCCCTCAACTGCTA CTTCCGCCAGTACTGCTCCGCCTTCCCTGACACCGATGGCTACTTTGGCTCCCGCGGGCC CTGCCTGGACTTCTCTCCCCTGAGCGGCTCCTTCGAGGCCAACCCTCCGTTCTGCGAGGA GCTCATGGACGCCATGGTCTCCCACTTCGAGAGACTGCTCGAGAGCTCGCCAGAGCCCCT GTCCTTCATCGTGTTCATCCCCGAATGGCGGGAACCCCCGACCCCAGCGCTCACCCGCAT GGAACAGAGCCGTTTCAAGCGCCACCAGCTGGTCCTGCCTGCCTTCGAGCATGAGTACCG CAGCGGCTCCCAGCACGTCTGCAAGAAGGAGGAAATGCACTACAAGGCCGTCCACAACAC AGCCGTGCTCTTCCTGCAGAACGACCCCGGCTTTGCCAAGTGGGGGCCCACCCCCGAGCG ACTGCAGGAGCTGAGCGCCGCCTACCGGCAGTCGGGCCGCAGCCACGGCTCCGGCAGCTC ATCATCCTCCTCGGAGGCCAAGGACCGGGACTCAGGCCGGGAGCAGGGCCCCAGCCGGGA GCCTCACCCCACTTAACACATCCTGCGGGGAGGCGGAGCCCCAGGGTGCTGGTATGGACT GCAGGGGCTCAGGCTCCTTCTGGGTGGCAGCAGGACTCAGGCTGCCAATGACGTAGGAAG ATCATGGCTCTGCCAGGGCTCCCCCTCCCTGCCCCATCCCCCAGCTGCCCACCTCAGACT CACTCCAAGCCCCCTGTAAATAGGCCCCACGCCTCTCCTTCCCCCATCTTGTTGCCACCT TGTTTCATTTGTAAAAGGAAATACAGAAACCTCCCAAACCTCCCAGGAATGTGTGAGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCAGCTGGCTGCGGAAGGACCACTCCGCCTCCAAGGAGGACTACATGGATCGCCTGGA GCACCTGCGGAGGCAGTGTGGGCCCCACGTCTCGGCCGCAGCCAAGGACTCTGTGGAAGG CATCTGTAGTAAGATCTACCACATCTCCCTGGAGTATGTCAAACGGATCCGAGAGAAGCA CCTTGCCATCCTCAAGGAAAACAACATCCCAGAGGAGGTGGAGGCCCCCGAGGTGGAGCC CCGCCTGGTGTACTGCTACCCAGTGCGGCTGGCCGTGTCTGCACCCCCCATGCCCAGCGT GGAGATGCACATGGAGAACAGCGTGGTCTGCATCCGGTACAAGGGCGAGATGGTCAAGGT CAGCCGCAACTACTTCAGCAAGCTGTGGCTCCTTTACCGCTACAGCTGCATTGACGACTC TGCCTTTGAGAGGTTCCTGCCCCGAGTCTGGTGTCTTCTCCGACGGTACCAGATGATGTT TGGCGTGGGCCTCTACGAGGGGACAGGCCTGCAGGGATCGCTGCCCGTGCACGTCTTCGA GGCCCTCCACCGACTTTTTGGCGTCAGCTTTGAGTGCTTTGCCTCACCCCTCAACTGCTA CTTCCGCCAGTACTGCTCCGCCTTCCCTGACACCGATGGCTACTTTGGCTCCCGCGGGCC CTGCCTGGACTTCTCTCCCCTGAGCGGCTCCTTCGAGGCCAACCCTCCGTTCTGCGAGGA GCTCATGGACGCCATGGTCTCCCACTTCGAGAGACTGCTCGAGAGCTCGCCAGAGCCCCT GTCCTTCATCGTGTTCATCCCCGAATGGCGGGAACCCCCGACCCCAGCGCTCACCCGCAT GGAACAGAGCCGTTTCAAGCGCCACCAGCTGGTCCTGCCTGCCTTCGAGCATGAGTACCG CAGCGGCTCCCAGCACGTCTGCAAGAAGGAGGAAATGCACTACAAGGCCGTCCACAACAC AGCCGTGCTCTTCCTGCAGAACGACCCCGGCTTTGCCAAGTGGGGGCCCACCCCCGAGCG ACTGCAGGAGCTGAGCGCCGCCTACCGGCAGTCGGGCCGCAGCCACGGCTCCGGCAGCTC ATCATCCTCCTCGGAGGCCAAGGACCGGGACTCAGGCCGGGAGCAGGGCCCCAGCCGGGA GCCTCACCCCACTTAACACATCCTGCGGGGAGGCGGAGCCCCAGGGTGCTGGTATGGACT GCAGGGGCTCAGGCTCCTTCTGGGTGGCAGCAGGACTCAGGCTGCCAATGACGTAGGAAG ATCATGGCTCTGCCAGGGCTCCCCCTCCCTGCCCCATCCCCCAGCTGCCCACCTCAGACT CACTCCAAGCCCCCTGTAAATAGGCCCCACGCCTCTCCTTCCCCCATCTTGTTGCCACCT TGTTTCATTTGTAAAAGGAAATACAGAAACCTCCCAAACCTCCCAGGAATGTGTGAGGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 210-385, gnl|bosTau2|chr13 (54534699-54534874) | |
| 210-385, gnl|Hg17|chr20 (44007754-44007929) | |
| 210-385, gnl|Mm7|chr2 (164629745-164629920) | |
| 470-658, gnl|bosTau2|chr13 (54535162-54535350) | |
| 470-658, gnl|canFam2|chr24 (36200523-36200733) | |
| 470-658, gnl|danRer3|chr7 (52536740-52536549) | |
| 470-658, gnl|dasNov1|scaffold_82 (131256-131465) | |
| 470-658, gnl|echTel1|scaffold_307608 (4721-4931) | |
| 470-658, gnl|galGal2|chr20 (10101128-10101330) | |
| 470-658, gnl|hg17|chr20 (44008233-44008443) | |
| 470-658, gnl|Hg17|chr20 (44008243-44008431) | |
| 470-658, gnl|loxAfr1|scaffold_37337 (4986-4777) | |
| 470-658, gnl|mm7|chr2 (164630195-164630405) | |
| 470-658, gnl|Mm7|chr2 (164630205-164630393) | |
| 470-658, gnl|monDom2|scaffold_35 (25282448-25282659) | |
| 470-658, gnl|oryCun1|scaffold_157756 (6667-6457) | |
| 470-658, gnl|panTro1|chr21 (46533669-46533879) | |
| 470-658, gnl|rheMac2|chr10 (18546288-18546078) | |
| 470-658, gnl|rn3|chr3 (155831279-155831489) | |
| 470-658, gnl|tetNig1|chr11 (11110919-11111110) | |
| 470-658, gnl|xenTro1|scaffold_131 (1553499-1553302) | |
| 928-1415, gnl|bosTau2|chr13 (54536418-54536922) | |
| 928-1415, gnl|Hg17|chr20 (44009570-44010063) | |
| 928-1415, gnl|Mm7|chr2 (164631531-164632027) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 210-385, gnl|bosTau2|chr13 (54534699-54534874) | |
| 210-385, gnl|Hg17|chr20 (44007754-44007929) | |
| 210-385, gnl|Mm7|chr2 (164629745-164629920) | |
| 470-658, gnl|bosTau2|chr13 (54535162-54535350) | |
| 470-658, gnl|canFam2|chr24 (36200523-36200733) | |
| 470-658, gnl|danRer3|chr7 (52536740-52536549) | |
| 470-658, gnl|dasNov1|scaffold_82 (131256-131465) | |
| 470-658, gnl|echTel1|scaffold_307608 (4721-4931) | |
| 470-658, gnl|galGal2|chr20 (10101128-10101330) | |
| 470-658, gnl|hg17|chr20 (44008233-44008443) | |
| 470-658, gnl|Hg17|chr20 (44008243-44008431) | |
| 470-658, gnl|loxAfr1|scaffold_37337 (4986-4777) | |
| 470-658, gnl|mm7|chr2 (164630195-164630405) | |
| 470-658, gnl|Mm7|chr2 (164630205-164630393) | |
| 470-658, gnl|monDom2|scaffold_35 (25282448-25282659) | |
| 470-658, gnl|oryCun1|scaffold_157756 (6667-6457) | |
| 470-658, gnl|panTro1|chr21 (46533669-46533879) | |
| 470-658, gnl|rheMac2|chr10 (18546288-18546078) | |
| 470-658, gnl|rn3|chr3 (155831279-155831489) | |
| 470-658, gnl|tetNig1|chr11 (11110919-11111110) | |
| 470-658, gnl|xenTro1|scaffold_131 (1553499-1553302) | |
| 928-1415, gnl|bosTau2|chr13 (54536418-54536922) | |
| 928-1415, gnl|Hg17|chr20 (44009570-44010063) | |
| 928-1415, gnl|Mm7|chr2 (164631531-164632027) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fli (0.202881) | |
| lnt (0.142308) | |
| eru (0.120048) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| lnt (0.142308) | |
| eru (0.120048) | |
| med (0.116252) |