Non-Coding RNA Search

Ss1.1-Lng1-LNG010027A03.5

Sequence:


               
               ATTTTTATAGGAATTTTTGCACTGCAGCATGCCTAATGAGGGGGAAAGGAAGGGCGATTC
ACTTTCTGACAATCACTTAATTCAGAGGAAAATGAGATTTACCAAGTCGACTTACCTTAC
CCGCCCCAGAGACCTATTGGTTGAGCCATGGGGACTTAATATATTTTACTTTGTGTGATT
GCATCTATGCAGACGCCAGTCTGGAAGAGCTAAAATGTTAAGTTTCTTGGCAACTTTGCA
TTCACACAGATTAACTGTGTAATTTGTGTGTGTCAATTACAATTAAAAGCACATTCTTGG
ACCATGACATAAAGTTACTCAACTGACTTTAAAACTATGGTCAGCTTGCATTCTCAGAAT
GATAGTGCCTTTTTTTTTTTTTTTTTCCTCTCTCTCTTTAGCATAAGAATGTTATCAGAG
TCTGGTCTACTTACCACTGTGGAGAATTTTTCCATTTTGTAGAGGGAGCTAAGGACAGCT
AATCCAACTACTTGGTGCATAATTGTTTCCTAGTAATTGGCAAAGGCTCGGTGTAAGATT
TCATTGGAGGCAGTGTGGCCTGGAGTATTTATATGGTGCTTAATGAATCTCCAGAATGCC
AGCCAGAAGCTTGATTGGTTCGTAGGGAATAAAGTGTAGACCGTATGAAATGAGCTGCAA
ACTCTAACGGCACAGGTCTTAATTGCCTCTTGCGGAGGTATCCAGAGCTTTTAAAAATTA
TGCTTTACGTGCCTCACAAGGGGGTACCCCCTAGCGGCCTCTCCAAAGTTGCAGTCCTTT
TAAAATTGTAACTGGCCTTTCCCCTAACCCGCCTTAGGCCTTCTAATCACCACATCTCTG
GGACAAATTGTGGACGATGTCGATGTCGCAGGTTGCTGTCCTTGAAGTTCATACCTGTCT
TTGCTTCAGCAACTCCTCTGCGATGACTCACTCATTTATTTATTCATGCCCTTCCCTCTG
CTCTAAAACAGGTAGGAAAGCGCTCTTACCAAATTTCTTTGTGGAAAAGTATTTCCAGGG
ACCCCAAATCCCAAATAGGAGTTCCAGTTCTAGAAATGAGCATGGGGTTTTTTTGGTGTG
TTTGGGCCTTGCGCCCCCGGTGGAACATTTGCCTCCTTCTCTTCTCTGTTTGGGCTGGCT
TCTCGAGCTGAGATGAAGGTGCAGGTGAGGTGTGTTGCGTGCTTTGGAAGGGCCAGTCTT
GGGGGCTTCAGGTGCAGACACTTAAGTGAGCACGGGTGGCCCCTGCTGTGTGTGCTGAGC
CTGGCTGGACTCTGGGGCAGGGCTCCAGGAACATGAGAAGCGATCTCCAGAAGGACCAGT
TGAACTCCATCAGAGACCAGGTCGCCTATGAAATGTAGCATGTGACCGGCCTGTGCTGCC
TGGAGACGGTTCCCATAGCTGGCCAGGGCCCCGGAGCCTGCACCCAGGGGCAGAGCCTGC
CCTTACTCACGCTCCGCTCCAGTGTCTTGGGAGTTGTGCGGCGACTCCGGCCCAGGAAAG
GGGAAGGAGGACCAGGCAGCTGGGTGCTGGCCTGGCTGTTGGCGTGTAGGGCTTCGTGAT
GCAGTTCTTGGAATGTTTCCGTGACTGTGTGACCAAGGCAGCACCTAGCAGCGGGCCAGG
CACAGAACGGGTGCTCTACTAGTAATGATGAGTCCTTGGGTGGACCCGGACGCCTGAGTT
CTGGAGCTTGCTGTGTTGCAACATGTCCTTTCCGTACATCTCTCGCCTTCTCAGGGGAAG
TATGTTTGCTCGGAAGTGGCCATGGGTGCAGACTGGATGCGTAGCCTTGGCGATGTCACA
GGGTTATCGGCTGTTCCTTTCACATTCCAGACCCTGGAGAGTGTTAACGGTTTCAGGAAA
GGAGCTTTGTGGCTGAGGCGTCAGTTACCAGTTCCCTTGAAGTGACTCCGTCACCTCTTA
AGTTGGTATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTATAGGAATTTTTGCACTGCAGCATGCCTAATGAGGGGGAAAGGAAGGGCGATTC
ACTTTCTGACAATCACTTAATTCAGAGGAAAATGAGATTTACCAAGTCGACTTACCTTAC
CCGCCCCAGAGACCTATTGGTTGAGCCATGGGGACTTAATATATTTTACTTTGTGTGATT
GCATCTATGCAGACGCCAGTCTGGAAGAGCTAAAATGTTAAGTTTCTTGGCAACTTTGCA
TTCACACAGATTAACTGTGTAATTTGTGTGTGTCAATTACAATTAAAAGCACATTCTTGG
ACCATGACATAAAGTTACTCAACTGACTTTAAAACTATGGTCAGCTTGCATTCTCAGAAT
GATAGTGCCTTTTTTTTTTTTTTTTTCCTCTCTCTCTTTAGCATAAGAATGTTATCAGAG
TCTGGTCTACTTACCACTGTGGAGAATTTTTCCATTTTGTAGAGGGAGCTAAGGACAGCT
AATCCAACTACTTGGTGCATAATTGTTTCCTAGTAATTGGCAAAGGCTCGGTGTAAGATT
TCATTGGAGGCAGTGTGGCCTGGAGTATTTATATGGTGCTTAATGAATCTCCAGAATGCC
AGCCAGAAGCTTGATTGGTTCGTAGGGAATAAAGTGTAGACCGTATGAAATGAGCTGCAA
ACTCTAACGGCACAGGTCTTAATTGCCTCTTGCGGAGGTATCCAGAGCTTTTAAAAATTA
TGCTTTACGTGCCTCACAAGGGGGTACCCCCTAGCGGCCTCTCCAAAGTTGCAGTCCTTT
TAAAATTGTAACTGGCCTTTCCCCTAACCCGCCTTAGGCCTTCTAATCACCACATCTCTG
GGACAAATTGTGGACGATGTCGATGTCGCAGGTTGCTGTCCTTGAAGTTCATACCTGTCT
TTGCTTCAGCAACTCCTCTGCGATGACTCACTCATTTATTTATTCATGCCCTTCCCTCTG
CTCTAAAACAGGTAGGAAAGCGCTCTTACCAAATTTCTTTGTGGAAAAGTATTTCCAGGG
ACCCCAAATCCCAAATAGGAGTTCCAGTTCTAGAAATGAGCATGGGGTTTTTTTGGTGTG
TTTGGGCCTTGCGCCCCCGGTGGAACATTTGCCTCCTTCTCTTCTCTGTTTGGGCTGGCT
TCTCGAGCTGAGATGAAGGTGCAGGTGAGGTGTGTTGCGTGCTTTGGAAGGGCCAGTCTT
GGGGGCTTCAGGTGCAGACACTTAAGTGAGCACGGGTGGCCCCTGCTGTGTGTGCTGAGC
CTGGCTGGACTCTGGGGCAGGGCTCCAGGAACATGAGAAGCGATCTCCAGAAGGACCAGT
TGAACTCCATCAGAGACCAGGTCGCCTATGAAATGTAGCATGTGACCGGCCTGTGCTGCC
TGGAGACGGTTCCCATAGCTGGCCAGGGCCCCGGAGCCTGCACCCAGGGGCAGAGCCTGC
CCTTACTCACGCTCCGCTCCAGTGTCTTGGGAGTTGTGCGGCGACTCCGGCCCAGGAAAG
GGGAAGGAGGACCAGGCAGCTGGGTGCTGGCCTGGCTGTTGGCGTGTAGGGCTTCGTGAT
GCAGTTCTTGGAATGTTTCCGTGACTGTGTGACCAAGGCAGCACCTAGCAGCGGGCCAGG
CACAGAACGGGTGCTCTACTAGTAATGATGAGTCCTTGGGTGGACCCGGACGCCTGAGTT
CTGGAGCTTGCTGTGTTGCAACATGTCCTTTCCGTACATCTCTCGCCTTCTCAGGGGAAG
TATGTTTGCTCGGAAGTGGCCATGGGTGCAGACTGGATGCGTAGCCTTGGCGATGTCACA
GGGTTATCGGCTGTTCCTTTCACATTCCAGACCCTGGAGAGTGTTAACGGTTTCAGGAAA
GGAGCTTTGTGGCTGAGGCGTCAGTTACCAGTTCCCTTGAAGTGACTCCGTCACCTCTTA
AGTTGGTATCTG

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               150-260, - strand, RNAz p=0.982312
               

               
               493-652, - strand, RNAz p=0.839806
               

               
               892-996, - strand, RNAz p=0.775293
               

               
               1209-1319, - strand, RNAz p=0.685839
               

               
               1360-1479, - strand, RNAz p=0.889051

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-260, - strand, RNAz p=0.982312
               

               
               493-652, - strand, RNAz p=0.839806
               

               
               892-996, - strand, RNAz p=0.775293
               

               
               1209-1319, - strand, RNAz p=0.685839
               

               
               1360-1479, - strand, RNAz p=0.889051

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1466-1558, + strand, RNAmicro p=0.999862

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1466-1558, + strand, RNAmicro p=0.999862

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1519, gnl|bosTau2|chr29 (4149996-4148506)
               

               
               1-1519, gnl|Hg17|chr11 (86339075-86337522)
               

               
               1-1519, gnl|Mm7|chr7 (85346144-85347682)
               


               
               1652-1929, gnl|bosTau2|chr29 (4148379-4148114)
               

               
               1652-1929, gnl|Hg17|chr11 (86337395-86337097)
               

               
               1652-1929, gnl|Mm7|chr7 (85347826-85348105)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1519, gnl|bosTau2|chr29 (4149996-4148506)
               

               
               1-1519, gnl|Hg17|chr11 (86339075-86337522)
               

               
               1-1519, gnl|Mm7|chr7 (85346144-85347682)
               


               
               1652-1929, gnl|bosTau2|chr29 (4148379-4148114)
               

               
               1652-1929, gnl|Hg17|chr11 (86337395-86337097)
               

               
               1652-1929, gnl|Mm7|chr7 (85347826-85348105)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               cut (0.339847)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               ese (0.253004)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               ese (0.253004)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	150-260, - strand, RNAz p=0.982312
	493-652, - strand, RNAz p=0.839806
	892-996, - strand, RNAz p=0.775293
	1209-1319, - strand, RNAz p=0.685839
	1360-1479, - strand, RNAz p=0.889051

	1-1519, gnl\|bosTau2\|chr29 (4149996-4148506)
	1-1519, gnl\|Hg17\|chr11 (86339075-86337522)
	1-1519, gnl\|Mm7\|chr7 (85346144-85347682)

	1652-1929, gnl\|bosTau2\|chr29 (4148379-4148114)
	1652-1929, gnl\|Hg17\|chr11 (86337395-86337097)
	1652-1929, gnl\|Mm7\|chr7 (85347826-85348105)

	cut (0.339847)
	sme (0.305437)
	ssp (0.271039)
	ese (0.253004)
	ill (0.175593)
	cki (0.165235)
	cje (0.165235)
	csp (0.161186)
	hyp (0.142837)
	che (0.136314)
	nmm (0.132802)
	bla (0.124347)
	clu (0.119646)
	jca (0.11396)
	jej (0.0989218)