Non-Coding RNA Search

Ss1.1-Lng1-LNG010027B04.5

Sequence:


               
               GGCCCAAGGTCCCGGCAGGGGTAGGTTGCAGTCGGGGGTCGGGTCGTGTCCGAGACCAGG
CGTCTTCACAGGCTCGCCTGATTTCTGCTCTGGTCCCGACGGTGTTCGATTTTTCTCCAA
TTTACGGGAGTTTTGCGGAATGAACCAGTGCTCGCAGGTACCCCACTTTTCTTTATGGGA
CGGAGCCGGAGTTCCTGTATCGAGCAGTTCGACGACCGGCGGCCCTGTTGGAGCGAAGTT
GAGCAGTTCGACGGCCGGGTACCGCTGCTTTATTAGATTGCACGCCTCGCAGACGGAGGA
GTTCAGGGACCTGGGGCCCAAGGTCCCGGCAGGGGTGTATCTCCATGAATAACTTAAATG
ACCCCCCAAATTGGAATATCCGGCCTAATTCCAGGGCTGATGGGGGTGATGGAAGCAGAT
GGAATTATGCCCTGTTGGTTCCAATGCTGGGATTGGCTGCTTTTCGTTGGATCTGGTCTA
GAGAGTCCCAGAAAGAAATAGAGAAAGAGAAGGAAGCCTGCCGGCAGAGAACGGCAGCCT
TCCAGCGGGACCTCGAGGCCAGGTACCACGCCACGATCTCAGAAAGTCGGCGTGCCGTGG
CTCGGCTGTCCCTGGAACTCGAGAAGGAACAGAACAGGACAACTAGTTACCGAGAAGCCC
TCATCTCGCAGGGGCGCAAGATGGTAGAAGAGAAGAAGCTTCTGGAACAGGAGCGGGCTC
AGGTCCTGCAGGAAAAGAGACAGCCCTTGCGGAGTGCGTACCTGAGCTGCCTGGACAAGG
AGGCCGACTGGCAGAGGAGGGCCAGGCTTCTACTGCGCGAGTTCGAGGAGGCGCTCGCGG
AGAGACAGAGCATCTACTGCAGCCTGGTTCTGCCTCGCGGTCGGCGCCTGGACATAGAGA
AGGGCCTGCTGGTGCGGGCGTCCACGGACCCCCTCGCCGTGGACCTAGAGATGGCAGCTG
GCCTGAGCGACATATTCAAGCACGACACGCACTGTGGAGGCGTCTGGAACACCAGCAAGC
GCCAGAACGGGAGGCTCATGTGGCTGTACCTCCAGTACTGGGAGCTGGTCGTCGAACTGA
AAAAGTTCAAGCGAGTGGAGAAAGCCATACTGGAGAAGTAGGACGGGCTGTGGCTTCTCC
TCCTCTGCCCGCGCCGCCTGCGTGGCAGCCACGCGTGCACCCGGCCGCCTTTGGGCAGCA
GCTTCCACTCCCGCCAGCCTGTGAGCAGCGAGCAAGGCCTCGGGAGCCAGGGTGTCCGCC
TGCATCCCCCGCAGGGGTCAGGGACCCCGCTTCTCGGAAGCGTTTTTGAGCTCTTGGTGT
TTTGTTCAGCAGAACAGTATAGCCTCATAGCTTTAGGGTAAAGTCGTTTTTAAGAATGTC
GGATACAGTATTCGTCCTTAGTGTAGGTAACTTTGGGGTCTGTTTTTATCACTCCCTGAA
TAAATTCTGTTTTCTCCTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCAAGGTCCCGGCAGGGGTAGGTTGCAGTCGGGGGTCGGGTCGTGTCCGAGACCAGG
CGTCTTCACAGGCTCGCCTGATTTCTGCTCTGGTCCCGACGGTGTTCGATTTTTCTCCAA
TTTACGGGAGTTTTGCGGAATGAACCAGTGCTCGCAGGTACCCCACTTTTCTTTATGGGA
CGGAGCCGGAGTTCCTGTATCGAGCAGTTCGACGACCGGCGGCCCTGTTGGAGCGAAGTT
GAGCAGTTCGACGGCCGGGTACCGCTGCTTTATTAGATTGCACGCCTCGCAGACGGAGGA
GTTCAGGGACCTGGGGCCCAAGGTCCCGGCAGGGGTGTATCTCCATGAATAACTTAAATG
ACCCCCCAAATTGGAATATCCGGCCTAATTCCAGGGCTGATGGGGGTGATGGAAGCAGAT
GGAATTATGCCCTGTTGGTTCCAATGCTGGGATTGGCTGCTTTTCGTTGGATCTGGTCTA
GAGAGTCCCAGAAAGAAATAGAGAAAGAGAAGGAAGCCTGCCGGCAGAGAACGGCAGCCT
TCCAGCGGGACCTCGAGGCCAGGTACCACGCCACGATCTCAGAAAGTCGGCGTGCCGTGG
CTCGGCTGTCCCTGGAACTCGAGAAGGAACAGAACAGGACAACTAGTTACCGAGAAGCCC
TCATCTCGCAGGGGCGCAAGATGGTAGAAGAGAAGAAGCTTCTGGAACAGGAGCGGGCTC
AGGTCCTGCAGGAAAAGAGACAGCCCTTGCGGAGTGCGTACCTGAGCTGCCTGGACAAGG
AGGCCGACTGGCAGAGGAGGGCCAGGCTTCTACTGCGCGAGTTCGAGGAGGCGCTCGCGG
AGAGACAGAGCATCTACTGCAGCCTGGTTCTGCCTCGCGGTCGGCGCCTGGACATAGAGA
AGGGCCTGCTGGTGCGGGCGTCCACGGACCCCCTCGCCGTGGACCTAGAGATGGCAGCTG
GCCTGAGCGACATATTCAAGCACGACACGCACTGTGGAGGCGTCTGGAACACCAGCAAGC
GCCAGAACGGGAGGCTCATGTGGCTGTACCTCCAGTACTGGGAGCTGGTCGTCGAACTGA
AAAAGTTCAAGCGAGTGGAGAAAGCCATACTGGAGAAGTAGGACGGGCTGTGGCTTCTCC
TCCTCTGCCCGCGCCGCCTGCGTGGCAGCCACGCGTGCACCCGGCCGCCTTTGGGCAGCA
GCTTCCACTCCCGCCAGCCTGTGAGCAGCGAGCAAGGCCTCGGGAGCCAGGGTGTCCGCC
TGCATCCCCCGCAGGGGTCAGGGACCCCGCTTCTCGGAAGCGTTTTTGAGCTCTTGGTGT
TTTGTTCAGCAGAACAGTATAGCCTCATAGCTTTAGGGTAAAGTCGTTTTTAAGAATGTC
GGATACAGTATTCGTCCTTAGTGTAGGTAACTTTGGGGTCTGTTTTTATCACTCCCTGAA
TAAATTCTGTTTTCTCCTCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96BQ5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96BQ5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               707-820, + strand, RNAz p=0.787409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               707-820, + strand, RNAz p=0.787409

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               59-259, gnl|bosTau2|chr20 (42741492-42741297)
               


               
               334-467, gnl|bosTau2|chr20 (42740409-42740276)
               

               
               334-467, gnl|Hg17|chr5 (269975-269842)
               

               
               334-467, gnl|Mm7|chr13 (71285407-71285540)
               


               
               468-1127, gnl|bosTau2|chr20 (42728499-42727840)
               

               
               468-1127, gnl|Hg17|chr5 (259071-258406)
               

               
               468-1127, gnl|Mm7|chr13 (71288617-71289282)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-259, gnl|bosTau2|chr20 (42741492-42741297)
               


               
               334-467, gnl|bosTau2|chr20 (42740409-42740276)
               

               
               334-467, gnl|Hg17|chr5 (269975-269842)
               

               
               334-467, gnl|Mm7|chr13 (71285407-71285540)
               


               
               468-1127, gnl|bosTau2|chr20 (42728499-42727840)
               

               
               468-1127, gnl|Hg17|chr5 (259071-258406)
               

               
               468-1127, gnl|Mm7|chr13 (71288617-71289282)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fli (0.405762)
               

               
               cst (0.280073)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.405762)
               

               
               cst (0.280073)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)

	59-259, gnl\|bosTau2\|chr20 (42741492-42741297)

	334-467, gnl\|bosTau2\|chr20 (42740409-42740276)
	334-467, gnl\|Hg17\|chr5 (269975-269842)
	334-467, gnl\|Mm7\|chr13 (71285407-71285540)

	468-1127, gnl\|bosTau2\|chr20 (42728499-42727840)
	468-1127, gnl\|Hg17\|chr5 (259071-258406)
	468-1127, gnl\|Mm7\|chr13 (71288617-71289282)

	fli (0.405762)
	cst (0.280073)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	fbs (0.175346)
	fhi (0.169578)
	cli (0.152812)
	lnt (0.142308)