Non-Coding RNA Search

Ss1.1-Lng1-LNG010027C01.5

Sequence:


               
               TGTCCCAGTCAGTTCCAAGGCTGCGGCTGCAGAGGAGTCACCTGCGGAGGAGCTGCAAAG
ATGCTGTCAGTGCGCGTCGCTGCGGCTGTGGCCCGCGCCCTCCCTCGGCGGGCCGGGCTG
GTCTCCAAAAATGCTTTGGGATCGTCCTTTGTTGCTGCAAGAAACCTCCATGCCTCTAAC
ACTCGTCTTCAGAAGACTGGCACTGCTGAGGTTTCCTCTATTCTTGAAGAGCGAATTCTT
GGCGCTGATACCTCTGTTGACCTTGAAGAGACCGGGCGTGTTTTAAGTATTGGTGATGGT
ATTGCCCGTGTACACGGGCTGAGAAATGTTCAGGCTGAAGAAATGGTAGAGTTTTCTTCA
GGTTTAAAGGGTATGTCTCTGAACTTGGAACCTGACAATGTTGGTGTTGTCGTGTTTGGA
AATGATAAGCTAATTAAGGAAGGAGATATTGTGAAGAGAACTGGGGCCATCGTGGATGTT
CCAGTTGGTGAGGAGCTGTTGGGTCGTGTAGTAGATGCCCTTGGTAACGCCATTGATGGA
AAGGGTCCAATTGGTTCCAAGACCCGAAGGCGAGTTGGCCTGAAAGCCCCTGGGATCATT
CCTCGAATCTCTGTGCGGGAACCAATGCAGACTGGCATTAAGGCTGTGGACAGCCTGGTG
CCAATTGGTCGTGGTCAGCGTGAGCTGATTATTGGCGACCGACAGACTGGCAAAACGTCA
ATTGCTATTGACACAATCATTAACCAGAAACGATTCAATGATGGAACTGATGAAAAGAAA
AAGCTGTACTGTATCTATGTTGCTATTGGTCAAAAGAGATCCACTGTTGCCCAGTTGGTG
AAGAGACTTACAGATGCAGATGCCATGAAGTACACCATTGTGGTTTCAGCTACTGCGTCT
GATGCTGCCCCACTTCAGTACCTGGCTCCTTATTCTGGATGTTCTATGGGAGAATATTTT
AGGGATAATGGCAAACATGCTTTGATCATCTATGATGACTTATCCAAACAGGCTGTTGCT
TATCGTCAGATGTCTCTGCTGCTCCGCCGACCCCCCGGTCGTGAGGCCTATCCTGGTGAC
GTGTTCTACCTACACTCCCGTCTGCTGGAGAGAGCGGCCAAAATGAACGATGCTTTCGGT
GGTGGCTCCTTGACTGCTTTACCAGTCATCGAAACACAAGCTGGTGATGTGTCTGCTTAC
ATTCCAACCAACGTCATTTCCATCACTGATGGACAGATTTTCTTGGAAACAGAATTGTTC
TACAAAGGTATCCGTCCTGCCATTAACGTTGGTTTGTCTGTATCTCGTGTGGGATCTGCT
GCCCAAACCAGGGCCATGAAGCAGGTGGCAGGTACCATGAAACTGGAATTGGCTCAGTAT
CGTGAAGTTGCTGCTTTTGCCCAGTTCGGTTCTGACCTGGATGCTGCCACTCAACAACTC
TTGAGTCGTGGTGTTCGTCTGACTGAGTTGCTGAAGCAAGGACAGTATGCTCCCATGGCT
ATTGAAGAGCAAGTAGCTGTTATCTATGCGGGTGTCAGGGGCTATCTTGATAAGCTGGAG
CCTAGCAAGATCACAAAGTTTGAGAATGCTTTCTTGTCTCACGTTATCAGCCAACACCAA
GCCCTGTTGGGAAAAATCAGGGCTGATGGAAAGATCTCAGAAGAGACAGATGCAAAGCTG
AAAGAGATTGTAACAAACTTCTTGGCTGGATTTGAAGCTTAAACTCCTGTGGATTAACGT
TAAATACCAGTTTGGTTTTGTCATTGTTTCTTCTGGTAATTTCCATTTGTAATAGGATTA
CTCATACTGCAGATGTACAGTGACTGCCTTAAAATAAAGGTTCCATAATGTTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCCAGTCAGTTCCAAGGCTGCGGCTGCAGAGGAGTCACCTGCGGAGGAGCTGCAAAG
ATGCTGTCAGTGCGCGTCGCTGCGGCTGTGGCCCGCGCCCTCCCTCGGCGGGCCGGGCTG
GTCTCCAAAAATGCTTTGGGATCGTCCTTTGTTGCTGCAAGAAACCTCCATGCCTCTAAC
ACTCGTCTTCAGAAGACTGGCACTGCTGAGGTTTCCTCTATTCTTGAAGAGCGAATTCTT
GGCGCTGATACCTCTGTTGACCTTGAAGAGACCGGGCGTGTTTTAAGTATTGGTGATGGT
ATTGCCCGTGTACACGGGCTGAGAAATGTTCAGGCTGAAGAAATGGTAGAGTTTTCTTCA
GGTTTAAAGGGTATGTCTCTGAACTTGGAACCTGACAATGTTGGTGTTGTCGTGTTTGGA
AATGATAAGCTAATTAAGGAAGGAGATATTGTGAAGAGAACTGGGGCCATCGTGGATGTT
CCAGTTGGTGAGGAGCTGTTGGGTCGTGTAGTAGATGCCCTTGGTAACGCCATTGATGGA
AAGGGTCCAATTGGTTCCAAGACCCGAAGGCGAGTTGGCCTGAAAGCCCCTGGGATCATT
CCTCGAATCTCTGTGCGGGAACCAATGCAGACTGGCATTAAGGCTGTGGACAGCCTGGTG
CCAATTGGTCGTGGTCAGCGTGAGCTGATTATTGGCGACCGACAGACTGGCAAAACGTCA
ATTGCTATTGACACAATCATTAACCAGAAACGATTCAATGATGGAACTGATGAAAAGAAA
AAGCTGTACTGTATCTATGTTGCTATTGGTCAAAAGAGATCCACTGTTGCCCAGTTGGTG
AAGAGACTTACAGATGCAGATGCCATGAAGTACACCATTGTGGTTTCAGCTACTGCGTCT
GATGCTGCCCCACTTCAGTACCTGGCTCCTTATTCTGGATGTTCTATGGGAGAATATTTT
AGGGATAATGGCAAACATGCTTTGATCATCTATGATGACTTATCCAAACAGGCTGTTGCT
TATCGTCAGATGTCTCTGCTGCTCCGCCGACCCCCCGGTCGTGAGGCCTATCCTGGTGAC
GTGTTCTACCTACACTCCCGTCTGCTGGAGAGAGCGGCCAAAATGAACGATGCTTTCGGT
GGTGGCTCCTTGACTGCTTTACCAGTCATCGAAACACAAGCTGGTGATGTGTCTGCTTAC
ATTCCAACCAACGTCATTTCCATCACTGATGGACAGATTTTCTTGGAAACAGAATTGTTC
TACAAAGGTATCCGTCCTGCCATTAACGTTGGTTTGTCTGTATCTCGTGTGGGATCTGCT
GCCCAAACCAGGGCCATGAAGCAGGTGGCAGGTACCATGAAACTGGAATTGGCTCAGTAT
CGTGAAGTTGCTGCTTTTGCCCAGTTCGGTTCTGACCTGGATGCTGCCACTCAACAACTC
TTGAGTCGTGGTGTTCGTCTGACTGAGTTGCTGAAGCAAGGACAGTATGCTCCCATGGCT
ATTGAAGAGCAAGTAGCTGTTATCTATGCGGGTGTCAGGGGCTATCTTGATAAGCTGGAG
CCTAGCAAGATCACAAAGTTTGAGAATGCTTTCTTGTCTCACGTTATCAGCCAACACCAA
GCCCTGTTGGGAAAAATCAGGGCTGATGGAAAGATCTCAGAAGAGACAGATGCAAAGCTG
AAAGAGATTGTAACAAACTTCTTGGCTGGATTTGAAGCTTAAACTCCTGTGGATTAACGT
TAAATACCAGTTTGGTTTTGTCATTGTTTCTTCTGGTAATTTCCATTTGTAATAGGATTA
CTCATACTGCAGATGTACAGTGACTGCCTTAAAATAAAGGTTCCATAATGTTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51247978|pdb|1W0K|C

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51247978|pdb|1W0K|C

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               620-737, - strand, RNAz p=0.99978

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-737, - strand, RNAz p=0.99978

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1878, gnl|bosTau2|chr24 (33552562-33554431)
               

               
               4-1878, gnl|Hg17|chr16 (70598150-70596288)
               

               
               4-1878, gnl|Mm7|chr18 (78055654-78064166)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1878, gnl|bosTau2|chr24 (33552562-33554431)
               

               
               4-1878, gnl|Hg17|chr16 (70598150-70596288)
               

               
               4-1878, gnl|Mm7|chr18 (78055654-78064166)

Expressed library(ies): 84 entry(ies)

More info

Expressed library(ies): 84 entry(ies)

Help | Less info


               
               hea (6.54397)
               

               
               nms (3.42173)
               

               
               tbr (3.23774)
               

               
               che (3.13522)
               

               
               ssp (2.30384)
               

               
               vin (1.66279)
               

               
               ece (1.60514)
               

               
               mas (1.47213)
               

               
               ldo (1.35804)
               

               
               isp (1.35338)
               

               
               hlv (1.25331)
               

               
               cly (1.08578)
               

               
               fbs (1.05208)
               

               
               sin (1.04969)
               

               
               pro (1.02407)
               

               
               spc (1.02029)
               

               
               cje (0.991408)
               

               
               col (0.975039)
               

               
               cbe (0.956938)
               

               
               nep (0.919625)
               

               
               sto (0.899119)
               

               
               sug (0.891039)
               

               
               ton (0.877501)
               

               
               bla (0.87043)
               

               
               fhi (0.847889)
               

               
               amn (0.835422)
               

               
               nje (0.8296)
               

               
               nco (0.808669)
               

               
               mga (0.801025)
               

               
               ova (0.774793)
               

               
               elu (0.770713)
               

               
               fat (0.737137)
               

               
               hyp (0.714184)
               

               
               mgp (0.692042)
               

               
               thg (0.633955)
               

               
               bfe (0.599431)
               

               
               nbm (0.595948)
               

               
               jej (0.593531)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               kid (0.518941)
               

               
               ebs (0.473205)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               lnt (0.426925)
               

               
               cty (0.41632)
               

               
               ute (0.398353)
               

               
               cov (0.396458)
               

               
               eje (0.395335)
               

               
               ret (0.3862)
               

               
               nlu (0.383362)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               cki (0.330469)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               ctl (0.153069)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 84 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (6.54397)
               

               
               nms (3.42173)
               

               
               tbr (3.23774)
               

               
               che (3.13522)
               

               
               ssp (2.30384)
               

               
               vin (1.66279)
               

               
               ece (1.60514)
               

               
               mas (1.47213)
               

               
               ldo (1.35804)
               

               
               isp (1.35338)
               

               
               hlv (1.25331)
               

               
               cly (1.08578)
               

               
               fbs (1.05208)
               

               
               sin (1.04969)
               

               
               pro (1.02407)
               

               
               spc (1.02029)
               

               
               cje (0.991408)
               

               
               col (0.975039)
               

               
               cbe (0.956938)
               

               
               nep (0.919625)
               

               
               sto (0.899119)
               

               
               sug (0.891039)
               

               
               ton (0.877501)
               

               
               bla (0.87043)
               

               
               fhi (0.847889)
               

               
               amn (0.835422)
               

               
               nje (0.8296)
               

               
               nco (0.808669)
               

               
               mga (0.801025)
               

               
               ova (0.774793)
               

               
               elu (0.770713)
               

               
               fat (0.737137)
               

               
               hyp (0.714184)
               

               
               mgp (0.692042)
               

               
               thg (0.633955)
               

               
               bfe (0.599431)
               

               
               nbm (0.595948)
               

               
               jej (0.593531)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               kid (0.518941)
               

               
               ebs (0.473205)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               lnt (0.426925)
               

               
               cty (0.41632)
               

               
               ute (0.398353)
               

               
               cov (0.396458)
               

               
               eje (0.395335)
               

               
               ret (0.3862)
               

               
               nlu (0.383362)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               cki (0.330469)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               ctl (0.153069)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	4-1878, gnl\|bosTau2\|chr24 (33552562-33554431)
	4-1878, gnl\|Hg17\|chr16 (70598150-70596288)
	4-1878, gnl\|Mm7\|chr18 (78055654-78064166)

	hea (6.54397)
	nms (3.42173)
	tbr (3.23774)
	che (3.13522)
	ssp (2.30384)
	vin (1.66279)
	ece (1.60514)
	mas (1.47213)
	ldo (1.35804)
	isp (1.35338)
	hlv (1.25331)
	cly (1.08578)
	fbs (1.05208)
	sin (1.04969)
	pro (1.02407)
	spc (1.02029)
	cje (0.991408)
	col (0.975039)
	cbe (0.956938)
	nep (0.919625)
	sto (0.899119)
	sug (0.891039)
	ton (0.877501)
	bla (0.87043)
	fhi (0.847889)
	amn (0.835422)
	nje (0.8296)
	nco (0.808669)
	mga (0.801025)
	ova (0.774793)
	elu (0.770713)
	fat (0.737137)
	hyp (0.714184)
	mgp (0.692042)
	thg (0.633955)
	bfe (0.599431)
	nbm (0.595948)
	jej (0.593531)
	fce (0.543183)
	fty (0.527519)
	kid (0.518941)
	ebs (0.473205)
	lin (0.436808)
	pty (0.428143)
	lnt (0.426925)
	cty (0.41632)
	ute (0.398353)
	cov (0.396458)
	eje (0.395335)
	ret (0.3862)
	nlu (0.383362)
	eep (0.367692)
	eru (0.360144)
	med (0.348756)
	rec (0.346141)
	ecc (0.345105)
	eye (0.341006)
	cki (0.330469)
	csp (0.322373)
	sme (0.305437)
	cag (0.302389)
	lun (0.300978)
	cte (0.29274)
	cst (0.280073)
	nca (0.273748)
	ste (0.270416)
	nmm (0.265604)
	pgl (0.236967)
	pan (0.23596)
	jca (0.22792)
	tes (0.207814)
	fli (0.202881)
	fcc (0.197785)
	sag (0.182715)
	gul (0.177588)
	ill (0.175593)
	duo (0.172801)
	ctl (0.153069)
	ski (0.146735)
	spl (0.143184)
	pla (0.133672)
	lyg (0.133103)
	ese (0.126502)
	tra (0.123092)