Ss1.1-Lng1-LNG010028A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTCCGCTTCCTTCGTGTCCGGCTGTTTTGGGGTCAGCAACTGCGCGACTTCGTGACCA GAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGCAGTTAATGCTACCCCCATGT CGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGATGACCCGAGAGGACTGGAGAA AGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGCCCCTGCAGAAGTTGATGAAG AAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTCTTCAGTGCCATGGTATATTG ATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACAGCCAGAGAAACAGAAGCAGT ATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGAGAATTCCATAACTACTAAGT ACCGCAAAGGAGCATGTGAAAACTGTGGAGCCATGACACACAAAAAAAAAGACTGCTTTG AGAGACCTAGGCGTGTTGGAGCAAAATTTACAGGTACTAATATAGCTCCAGACGAACATA TCCAGCCTCAGCTAATGTTTGACTACGATGGAAAGAGGGATCGGTGGAACGGCTACAATC CAGAAGAACACATGAAAATTGTAGAAGAATATGCCAAAGTTGATCTGGCAAAACGAACAC TGAAAGCCCAAAAACTCCAAGAAGAATTAGCCTCAGGAAAGTTAGTGGAACAGGCTAATT CTCCAAAACACCAGTGGGGAGAAGAGGAACCAAATTCTCAAACGGAAAAAGATCATAATA GTGAAGATGAAGATGAAGATAAATATGCAGATGATATTGACATGCCTGGACAGAATTTTG ACTCTAAGAGACGAATTACTGTCCACAGGGTTCATGAGACTATAAATTTAGCAAAATATT TGCGGAATTTAGATCCAAATTCTGCTTACTATGATCCCAAAACTAGAGCAATGAGAGAGA ATCCCTATGCCAATGCAGGAAAGAATCCAGATGAAGTGAGCTATGCAGGGGATAACTTTG TTAGATACACAGGCGATACCATATCAATGGCTCAGACACAATTGTTTGCTTGGGAAGCCT ATGACAAAGGGTCTGAAGTGCATTTGCAAGCCGATCCTACAAAACTAGAGCTGTTGTATA AGTCCTTCAAAGTCAAGAAAGAAGACTTCAAAGAACAGCAGAAAGAAAGCATCCTGGAAA AGTATGGTGGCCAGGAACACTTGGATGCCCCTCCAGCCGAACTGCTTTTAGCTCAGACTG AAGACTATGTGGAGTACTCAAGACATGGGACGGTCATCAAAGGACAGGAGCGGGCTGTTG CCTGCTCCAAGTATGAGGAGGATGTGAAGATCAACAATCATACGCATATCTGGGGATCTT ATTGGAAAGATGGCCGATGGGGATACAAATGCTGTCACTCATTTTTCAAGTATTCCTATT GTACTGGAGAAGCTGGGAAAGAGATTGCTAATTCAGAGGAATGTATTATGAATGATACAA CTGGAGAAGAATCTGTGAAGAAACCTCAAACCCTCATGGAGATGCATCAGGAAAAACTAA AAGAGGAGAAAAAGAAGAAAAAAAAGAAGAAGAGGAAACATAGAAAGAGCAGTTCAGAGA GCGATGATGAAGAAAAGAAACATGAAAAATTGAAAAAGGCACTGAATGCAGAGGAGGCCC GCCTTCTTCATGTCAAGGAGATCATGCAGATCGATGAGAGGAAGCGGCCTTACAACAGCG TATATGAAACTCGGGAACCCACTGAAGAGGAAATGGAGGCCTACAGAATGAAACGTCAGA GGCCAGATGACCCCATGGCCTCCTTCCTTGGACAGTAATAACTGGTCACAGACAGTCACC CAAGATAGACACTGCTGATATATTCTCTCAGATTCTTGCTGATGATTATTGATGGGAAAA TCCATATCGATTCTTCTTGCTGCCTGGCTTTAATAAAGCATCCAGAAGTCTCATAGAAAA TTCATTCCTTTCCATACTGAAGAAACAAGAAGAAATAAGCAGGACATTAGGGGCAGAGTA AGGTTTTATTTCCAATTTTATATTTGTGAGGTGGAAAGAAGTCTTGGCTCTCCACCTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTCCGCTTCCTTCGTGTCCGGCTGTTTTGGGGTCAGCAACTGCGCGACTTCGTGACCA GAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGCAGTTAATGCTACCCCCATGT CGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGATGACCCGAGAGGACTGGAGAA AGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGCCCCTGCAGAAGTTGATGAAG AAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTCTTCAGTGCCATGGTATATTG ATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACAGCCAGAGAAACAGAAGCAGT ATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGAGAATTCCATAACTACTAAGT ACCGCAAAGGAGCATGTGAAAACTGTGGAGCCATGACACACAAAAAAAAAGACTGCTTTG AGAGACCTAGGCGTGTTGGAGCAAAATTTACAGGTACTAATATAGCTCCAGACGAACATA TCCAGCCTCAGCTAATGTTTGACTACGATGGAAAGAGGGATCGGTGGAACGGCTACAATC CAGAAGAACACATGAAAATTGTAGAAGAATATGCCAAAGTTGATCTGGCAAAACGAACAC TGAAAGCCCAAAAACTCCAAGAAGAATTAGCCTCAGGAAAGTTAGTGGAACAGGCTAATT CTCCAAAACACCAGTGGGGAGAAGAGGAACCAAATTCTCAAACGGAAAAAGATCATAATA GTGAAGATGAAGATGAAGATAAATATGCAGATGATATTGACATGCCTGGACAGAATTTTG ACTCTAAGAGACGAATTACTGTCCACAGGGTTCATGAGACTATAAATTTAGCAAAATATT TGCGGAATTTAGATCCAAATTCTGCTTACTATGATCCCAAAACTAGAGCAATGAGAGAGA ATCCCTATGCCAATGCAGGAAAGAATCCAGATGAAGTGAGCTATGCAGGGGATAACTTTG TTAGATACACAGGCGATACCATATCAATGGCTCAGACACAATTGTTTGCTTGGGAAGCCT ATGACAAAGGGTCTGAAGTGCATTTGCAAGCCGATCCTACAAAACTAGAGCTGTTGTATA AGTCCTTCAAAGTCAAGAAAGAAGACTTCAAAGAACAGCAGAAAGAAAGCATCCTGGAAA AGTATGGTGGCCAGGAACACTTGGATGCCCCTCCAGCCGAACTGCTTTTAGCTCAGACTG AAGACTATGTGGAGTACTCAAGACATGGGACGGTCATCAAAGGACAGGAGCGGGCTGTTG CCTGCTCCAAGTATGAGGAGGATGTGAAGATCAACAATCATACGCATATCTGGGGATCTT ATTGGAAAGATGGCCGATGGGGATACAAATGCTGTCACTCATTTTTCAAGTATTCCTATT GTACTGGAGAAGCTGGGAAAGAGATTGCTAATTCAGAGGAATGTATTATGAATGATACAA CTGGAGAAGAATCTGTGAAGAAACCTCAAACCCTCATGGAGATGCATCAGGAAAAACTAA AAGAGGAGAAAAAGAAGAAAAAAAAGAAGAAGAGGAAACATAGAAAGAGCAGTTCAGAGA GCGATGATGAAGAAAAGAAACATGAAAAATTGAAAAAGGCACTGAATGCAGAGGAGGCCC GCCTTCTTCATGTCAAGGAGATCATGCAGATCGATGAGAGGAAGCGGCCTTACAACAGCG TATATGAAACTCGGGAACCCACTGAAGAGGAAATGGAGGCCTACAGAATGAAACGTCAGA GGCCAGATGACCCCATGGCCTCCTTCCTTGGACAGTAATAACTGGTCACAGACAGTCACC CAAGATAGACACTGCTGATATATTCTCTCAGATTCTTGCTGATGATTATTGATGGGAAAA TCCATATCGATTCTTCTTGCTGCCTGGCTTTAATAAAGCATCCAGAAGTCTCATAGAAAA TTCATTCCTTTCCATACTGAAGAAACAAGAAGAAATAAGCAGGACATTAGGGGCAGAGTA AGGTTTTATTTCCAATTTTATATTTGTGAGGTGGAAAGAAGTCTTGGCTCTCCACCTATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1630-1868, - strand, RNAz p=0.866102 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1630-1868, - strand, RNAz p=0.866102 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 62-628, gnl|bosTau2|chr27 (1524172-1524734) | |
| 62-628, gnl|Hg17|chr5 (159774895-159773060) | |
| 62-628, gnl|Mm7|chr11 (43394098-43396051) | |
| 633-1280, gnl|bosTau2|chr27 (1525340-1525983) | |
| 633-1280, gnl|Hg17|chr5 (159772104-159766137) | |
| 633-1280, gnl|Mm7|chr11 (43397364-43400099) | |
| 1364-1469, gnl|bosTau2|chr7 (48900913-48901018) | |
| 1364-1469, gnl|canFam2|chr4 (53529478-53529361) | |
| 1364-1469, gnl|danRer3|chrUn (148435012-148434892) | |
| 1364-1469, gnl|dasNov1|scaffold_12340 (7254-7177) | |
| 1364-1469, gnl|echTel1|scaffold_295705 (52013-51896) | |
| 1364-1469, gnl|fr1|chrUn (29131457-29131343) | |
| 1364-1469, gnl|galGal2|chr13 (1749813-1749930) | |
| 1364-1469, gnl|hg17|chr5 (159764605-159764722) | |
| 1364-1469, gnl|Hg17|chr5 (159764721-159764616) | |
| 1364-1469, gnl|loxAfr1|scaffold_16855 (18521-18638) | |
| 1364-1469, gnl|mm7|chr11 (43401596-43401479) | |
| 1364-1469, gnl|Mm7|chr11 (43401478-43401583) | |
| 1364-1469, gnl|monDom2|scaffold_6 (44514718-44514605) | |
| 1364-1469, gnl|oryCun1|scaffold_206803 (80427-80544) | |
| 1364-1469, gnl|panTro1|chr4 (166943338-166943455) | |
| 1364-1469, gnl|rheMac2|chr6 (156791024-156791141) | |
| 1364-1469, gnl|rn3|chr10 (28550209-28550092) | |
| 1364-1469, gnl|tetNig1|chr1 (1116029-1116143) | |
| 1364-1469, gnl|xenTro1|scaffold_648 (311648-311765) | |
| 1630-2100, gnl|bosTau2|chr27 (1526548-1527036) | |
| 1630-2100, gnl|Hg17|chr5 (159763051-159762525) | |
| 1630-2100, gnl|Mm7|chr11 (43402758-43403176) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-628, gnl|bosTau2|chr27 (1524172-1524734) | |
| 62-628, gnl|Hg17|chr5 (159774895-159773060) | |
| 62-628, gnl|Mm7|chr11 (43394098-43396051) | |
| 633-1280, gnl|bosTau2|chr27 (1525340-1525983) | |
| 633-1280, gnl|Hg17|chr5 (159772104-159766137) | |
| 633-1280, gnl|Mm7|chr11 (43397364-43400099) | |
| 1364-1469, gnl|bosTau2|chr7 (48900913-48901018) | |
| 1364-1469, gnl|canFam2|chr4 (53529478-53529361) | |
| 1364-1469, gnl|danRer3|chrUn (148435012-148434892) | |
| 1364-1469, gnl|dasNov1|scaffold_12340 (7254-7177) | |
| 1364-1469, gnl|echTel1|scaffold_295705 (52013-51896) | |
| 1364-1469, gnl|fr1|chrUn (29131457-29131343) | |
| 1364-1469, gnl|galGal2|chr13 (1749813-1749930) | |
| 1364-1469, gnl|hg17|chr5 (159764605-159764722) | |
| 1364-1469, gnl|Hg17|chr5 (159764721-159764616) | |
| 1364-1469, gnl|loxAfr1|scaffold_16855 (18521-18638) | |
| 1364-1469, gnl|mm7|chr11 (43401596-43401479) | |
| 1364-1469, gnl|Mm7|chr11 (43401478-43401583) | |
| 1364-1469, gnl|monDom2|scaffold_6 (44514718-44514605) | |
| 1364-1469, gnl|oryCun1|scaffold_206803 (80427-80544) | |
| 1364-1469, gnl|panTro1|chr4 (166943338-166943455) | |
| 1364-1469, gnl|rheMac2|chr6 (156791024-156791141) | |
| 1364-1469, gnl|rn3|chr10 (28550209-28550092) | |
| 1364-1469, gnl|tetNig1|chr1 (1116029-1116143) | |
| 1364-1469, gnl|xenTro1|scaffold_648 (311648-311765) | |
| 1630-2100, gnl|bosTau2|chr27 (1526548-1527036) | |
| 1630-2100, gnl|Hg17|chr5 (159763051-159762525) | |
| 1630-2100, gnl|Mm7|chr11 (43402758-43403176) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| amn (0.417711) | |
| rec (0.346141) | |
| liv (0.292569) | |
| tes (0.207814) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| clu (0.119646) | |
| med (0.116252) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| rec (0.346141) | |
| liv (0.292569) | |
| tes (0.207814) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| clu (0.119646) | |
| med (0.116252) | |
| cbl (0.114797) | |
| cty (0.10408) |