Non-Coding RNA Search

Ss1.1-Lng1-LNG010028A06.5

Sequence:


               
               TTTGATCCACTCATTACCAGTCTTTTGTACTTCCCTGTAAATAGGTATGATCTTTATTCC
TACTGTACAGTCTGTTCTGTCTCCCCCACCTCCCATCAGACCCTATTTTGTCCTTTATTA
GTATCTTTAGTTTGGTCCCTTCATGCTTATCCCCAAACCCACCCCATGCAACCAGTGGTT
TAATCCACATACCACTAGCATGTAGTTCTACAGAAGCCTACTTGTGGCCCCCTCATATCA
TAACACCTGTTCCTGTGGACAGGGAATGACTGGCACTGAAGGTCCCTCACAGTTGTCCCG
TATCACCAGAGGACGTTGGTCCTTTCTTAATCTCTAGCCTCTCTTCATATCCCTCATCAG
GTATTTTATGATGTCTTTGGGAAGCCATCAAGGCAAGAGACAACTCTAAACTCCTTCTTG
TTCTAGCCCAGAATTTGGGAGAAATAAGATAGACGAGGCCATAGTAACCTAGGATTGGAA
CCTTTCTGCCCTTTTGGCGTGCAGACTGCCTTCTGTCCCAGAGCAGCTCAGAAATCCATG
AAGCTGAGATTCTGAAGGACCCAGCTTAGGTTCTTCCACTTAGGCCTCAATTCCCTTCCT
TTTCCAGGGGCAGCCTTAGTTCCCGTGGCCCTGAAACACACATGCATTTCCCCCTTCTTT
TCCCAGCACCCACTAGCCCCCAGAAGTACCCGGTGCATCCTTACAAGTGGAAGAACTTAG
GATGGCTCTTTTAAGTCTCTTAGAAATGAAGTCCTTTCTCTGTACAGCTTTCCCCATGGA
GCAGGAGTGAAGATGTTTCATTGCCTTGGGGTTGGGAAACCATTTCTCCAGGCCTCTTCT
CCCCTCCCCTGCCCCCCTTAGGAACAGGATTGGCCTTAGCTTCTGGGCCTATCTGCTGCC
TTTTGTCCACTTCCTCTCAACTCTTCTGCTTTCCTTTGAGCTCTTTGGGGCTTGGGGAAC
CTTAGTTTTTTTTATTTCCCAGCTCTTAATTTTTTTCTTCTGATCAGTTGGTTTTTTTTT
AAGGGGCGGGGTGGGGGGGAGGTTGGTGGTTTTTTTTCTGTTTGTTTTTTTTTTTGCTTC
TAAAAAAAGCATTTGCCTTTTTTCCCTTTCTTCCTCTCCCAACATAACAATCGTGGTAAC
AGAATGCAACTGCTGATTTACCGATGTATTTAATGTAAGTAAAAAAGGAGAAAAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGATCCACTCATTACCAGTCTTTTGTACTTCCCTGTAAATAGGTATGATCTTTATTCC
TACTGTACAGTCTGTTCTGTCTCCCCCACCTCCCATCAGACCCTATTTTGTCCTTTATTA
GTATCTTTAGTTTGGTCCCTTCATGCTTATCCCCAAACCCACCCCATGCAACCAGTGGTT
TAATCCACATACCACTAGCATGTAGTTCTACAGAAGCCTACTTGTGGCCCCCTCATATCA
TAACACCTGTTCCTGTGGACAGGGAATGACTGGCACTGAAGGTCCCTCACAGTTGTCCCG
TATCACCAGAGGACGTTGGTCCTTTCTTAATCTCTAGCCTCTCTTCATATCCCTCATCAG
GTATTTTATGATGTCTTTGGGAAGCCATCAAGGCAAGAGACAACTCTAAACTCCTTCTTG
TTCTAGCCCAGAATTTGGGAGAAATAAGATAGACGAGGCCATAGTAACCTAGGATTGGAA
CCTTTCTGCCCTTTTGGCGTGCAGACTGCCTTCTGTCCCAGAGCAGCTCAGAAATCCATG
AAGCTGAGATTCTGAAGGACCCAGCTTAGGTTCTTCCACTTAGGCCTCAATTCCCTTCCT
TTTCCAGGGGCAGCCTTAGTTCCCGTGGCCCTGAAACACACATGCATTTCCCCCTTCTTT
TCCCAGCACCCACTAGCCCCCAGAAGTACCCGGTGCATCCTTACAAGTGGAAGAACTTAG
GATGGCTCTTTTAAGTCTCTTAGAAATGAAGTCCTTTCTCTGTACAGCTTTCCCCATGGA
GCAGGAGTGAAGATGTTTCATTGCCTTGGGGTTGGGAAACCATTTCTCCAGGCCTCTTCT
CCCCTCCCCTGCCCCCCTTAGGAACAGGATTGGCCTTAGCTTCTGGGCCTATCTGCTGCC
TTTTGTCCACTTCCTCTCAACTCTTCTGCTTTCCTTTGAGCTCTTTGGGGCTTGGGGAAC
CTTAGTTTTTTTTATTTCCCAGCTCTTAATTTTTTTCTTCTGATCAGTTGGTTTTTTTTT
AAGGGGCGGGGTGGGGGGGAGGTTGGTGGTTTTTTTTCTGTTTGTTTTTTTTTTTGCTTC
TAAAAAAAGCATTTGCCTTTTTTCCCTTTCTTCCTCTCCCAACATAACAATCGTGGTAAC
AGAATGCAACTGCTGATTTACCGATGTATTTAATGTAAGTAAAAAAGGAGAAAAAAAAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               152-268, - strand, RNAz p=0.719821
               

               
               309-428, + strand, RNAz p=0.774989

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-268, - strand, RNAz p=0.719821
               

               
               309-428, + strand, RNAz p=0.774989

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002868, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002868, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-1029, gnl|bosTau2|chr5 (33618075-33617056)
               

               
               1-1029, gnl|Hg17|chr12 (54673593-54674616)
               

               
               1-1029, gnl|Mm7|chr10 (128180035-128179084)
               


               
               1062-1197, gnl|bosTau2|chr5 (33617051-33616916)
               

               
               1062-1197, gnl|canFam2|chr10 (3306893-3306983)
               

               
               1062-1197, gnl|dasNov1|scaffold_29766 (39497-39583)
               

               
               1062-1197, gnl|echTel1|scaffold_182901 (8020-7920)
               

               
               1062-1197, gnl|hg17|chr12 (54674623-54674713)
               

               
               1062-1197, gnl|Hg17|chr12 (54674628-54674756)
               

               
               1062-1197, gnl|loxAfr1|scaffold_4766 (52820-52710)
               

               
               1062-1197, gnl|mm7|chr10 (128179080-128178986)
               

               
               1062-1197, gnl|Mm7|chr10 (128179073-128178944)
               

               
               1062-1197, gnl|monDom2|scaffold_25 (33939319-33939410)
               

               
               1062-1197, gnl|oryCun1|scaffold_99113 (5527-5436)
               

               
               1062-1197, gnl|panTro1|chr10 (55891791-55891881)
               

               
               1062-1197, gnl|rheMac2|chr11 (53047757-53047847)
               

               
               1062-1197, gnl|rn3|chr7 (1979914-1979819)
               

               
               1062-1197, gnl|xenTro1|scaffold_85 (1925333-1925418)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1029, gnl|bosTau2|chr5 (33618075-33617056)
               

               
               1-1029, gnl|Hg17|chr12 (54673593-54674616)
               

               
               1-1029, gnl|Mm7|chr10 (128180035-128179084)
               


               
               1062-1197, gnl|bosTau2|chr5 (33617051-33616916)
               

               
               1062-1197, gnl|canFam2|chr10 (3306893-3306983)
               

               
               1062-1197, gnl|dasNov1|scaffold_29766 (39497-39583)
               

               
               1062-1197, gnl|echTel1|scaffold_182901 (8020-7920)
               

               
               1062-1197, gnl|hg17|chr12 (54674623-54674713)
               

               
               1062-1197, gnl|Hg17|chr12 (54674628-54674756)
               

               
               1062-1197, gnl|loxAfr1|scaffold_4766 (52820-52710)
               

               
               1062-1197, gnl|mm7|chr10 (128179080-128178986)
               

               
               1062-1197, gnl|Mm7|chr10 (128179073-128178944)
               

               
               1062-1197, gnl|monDom2|scaffold_25 (33939319-33939410)
               

               
               1062-1197, gnl|oryCun1|scaffold_99113 (5527-5436)
               

               
               1062-1197, gnl|panTro1|chr10 (55891791-55891881)
               

               
               1062-1197, gnl|rheMac2|chr11 (53047757-53047847)
               

               
               1062-1197, gnl|rn3|chr7 (1979914-1979819)
               

               
               1062-1197, gnl|xenTro1|scaffold_85 (1925333-1925418)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               ese (0.379507)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               che (0.136314)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               che (0.136314)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	152-268, - strand, RNAz p=0.719821
	309-428, + strand, RNAz p=0.774989

	1-1029, gnl\|bosTau2\|chr5 (33618075-33617056)
	1-1029, gnl\|Hg17\|chr12 (54673593-54674616)
	1-1029, gnl\|Mm7\|chr10 (128180035-128179084)

	1062-1197, gnl\|bosTau2\|chr5 (33617051-33616916)
	1062-1197, gnl\|canFam2\|chr10 (3306893-3306983)
	1062-1197, gnl\|dasNov1\|scaffold_29766 (39497-39583)
	1062-1197, gnl\|echTel1\|scaffold_182901 (8020-7920)
	1062-1197, gnl\|hg17\|chr12 (54674623-54674713)
	1062-1197, gnl\|Hg17\|chr12 (54674628-54674756)
	1062-1197, gnl\|loxAfr1\|scaffold_4766 (52820-52710)
	1062-1197, gnl\|mm7\|chr10 (128179080-128178986)
	1062-1197, gnl\|Mm7\|chr10 (128179073-128178944)
	1062-1197, gnl\|monDom2\|scaffold_25 (33939319-33939410)
	1062-1197, gnl\|oryCun1\|scaffold_99113 (5527-5436)
	1062-1197, gnl\|panTro1\|chr10 (55891791-55891881)
	1062-1197, gnl\|rheMac2\|chr11 (53047757-53047847)
	1062-1197, gnl\|rn3\|chr7 (1979914-1979819)
	1062-1197, gnl\|xenTro1\|scaffold_85 (1925333-1925418)

	ese (0.379507)
	hyp (0.285673)
	lnt (0.284616)
	hlv (0.278513)
	med (0.232504)
	ecc (0.23007)
	nms (0.213858)
	hea (0.204499)
	jej (0.197844)
	fcc (0.197785)
	nlu (0.191681)
	sag (0.182715)
	sto (0.179824)
	ton (0.1755)
	nco (0.161734)
	che (0.136314)
	cbr (0.127975)
	cly (0.120642)
	eru (0.120048)