Ss1.1-Lng1-LNG010028E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCACCAGCATCCTCCTTGCTAGACATGGACATGACATTTTTAAAGGAATTATTTGGT TACAGCGTTTTAGGACTAAAGATGCTGTTCGTGAGCTAGATAACCTGCAGTACCGGAAAA TGAAAAAAATCCTTTTCCAAGAGATCTGGAGGTAAAGAAAAAGCCTGCCAGGGATTCAGA AGGCATCCCACTAGCGATCAGCTGACATTCCTAACTGAAGGCTGCAATGTGTTGCTTATT CATTTTGTACCGTGGGAGCTGCGGGGACTAGCAGAGAGCTAAACTATGCATTTCAAACAG CAGTGCTTGTGCAGAAAGAGGGGTGAGAGAGAGGCAGCCGGCGAGGAAAGAGCACAGCTG GACTTTCTCCTTGTTTTTATCCATTTCTGCAGGATCATGTATTCATAAGGGATGAGGCGG GCCACGGCGATCCCAGGCCTGAGCCGCGGCCTACCCAGTCAGTTCAGAGCCAGGCCCTCC ACTACCGGAACAGAGAGCGCTTTGCCACGATCAAATCAGCATCTTTGGTTACACGACAGA TCCATGAGCATGAGCAGGAGAACGAGTTGCGGGAACAGATGTCAGGTTATAAGCGGATGC GGCGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGCTGAGATGGACG AGCACCGCCTCAAGCTACAGAAGGAGGTGGAGACGCATGCCAACAACTCGTCCATCGAGC TGGAGAAGCTGGCCAAGAAGCAAGTGGCTATCATAGAAAAGGAGGCAAAGGTAGCTGCAG CAGATGAGAAGAAGTTCCAGCAACAGATCTTGGCCCAGCAGAAGAAAGACTTGACAACTT TCTTAGAAAGTCAGAAGAAGCAGTATAAGATTTGTAAGGAAAAAATAAAAGAGGAGATGA ATGAGGACCATAGCACACCCAAGAAAGAAAAGCAGGAGCGGATATCCAAGCATAAAGAGA ACTTGCAGCACACACAGGCCGAAGAGGAAGCCCACCTTCTCACTCAGCAGAGACTGTACT ACGACAAAAACTGTCGTTTCTTCAAGCGGAAAATAATGATCAAGCGGCATGAGGTGGAGC AGCAGAACATTCGGGAGGAACTAAATAAAAAGAGGACCCAGAAGGAGATGGAGCATGCCA TGCTGATCCGGCACGATGAGTCCACTCGAGAGCTGGAGTACAGGCAGCTGCACACGTTAC AGAAACTCCGCATGGATCTGATCCGGCTACAGCACCAGACTGAACTGGAAAACCAGCTGG AGTACAATAAGAGGCGAGAAAGGGAACTGCACAGAAAGCATGTCATGGAACTTCGGCAAC AGCCAAAAAACTTAAAGGCCATGGAAATGCAAATTAAAAAACAGTTTCAGGACACTTGCA AAGTACAGACCAAACAGTATAAAGCACTCAAGAATCACCAGTTGGAAGTTACTCCAAAGA ATGAGCACAAAACAATCTTAAAGACACTGAAAGATGAGCAGACGCGAAAACTTGCCATTT TGGCAGAGCAGTATGAACAGAGTATAAATGAAATGATGGCCTCTCAAGCGTTACGGCTAG ATGAGGCTCAAGAAGCAGAATGCCAGGCCTTGAGGCTACAGCTCCAGCAGGAAATGGAGC TGCTCAATGCCTACCAGAGCAAAATCAAGATGCAGACAGAGGCACAACATGAACGTGAGC TCCAGAAGCTAGAGCAGAGGGTGTCTCTGCGCAGAGCACATCTTGAGCAGAAGATTGAAG AAGAGCTGGCTGCCCTTCAGAAGGAACGCAGCGAGAGAATAAAGTACCTATTGGAAAGGC AAGAGCGAGAGATTGAAACTTTTGACATGGAGAGCCTCAGAATGGGATTTGGGAATTTGG TTACATTAGATTTTCCTAAGGAGGACTATAGATGAGATTAAATTTTTTTGCCATTTACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCACCAGCATCCTCCTTGCTAGACATGGACATGACATTTTTAAAGGAATTATTTGGT TACAGCGTTTTAGGACTAAAGATGCTGTTCGTGAGCTAGATAACCTGCAGTACCGGAAAA TGAAAAAAATCCTTTTCCAAGAGATCTGGAGGTAAAGAAAAAGCCTGCCAGGGATTCAGA AGGCATCCCACTAGCGATCAGCTGACATTCCTAACTGAAGGCTGCAATGTGTTGCTTATT CATTTTGTACCGTGGGAGCTGCGGGGACTAGCAGAGAGCTAAACTATGCATTTCAAACAG CAGTGCTTGTGCAGAAAGAGGGGTGAGAGAGAGGCAGCCGGCGAGGAAAGAGCACAGCTG GACTTTCTCCTTGTTTTTATCCATTTCTGCAGGATCATGTATTCATAAGGGATGAGGCGG GCCACGGCGATCCCAGGCCTGAGCCGCGGCCTACCCAGTCAGTTCAGAGCCAGGCCCTCC ACTACCGGAACAGAGAGCGCTTTGCCACGATCAAATCAGCATCTTTGGTTACACGACAGA TCCATGAGCATGAGCAGGAGAACGAGTTGCGGGAACAGATGTCAGGTTATAAGCGGATGC GGCGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGCTGAGATGGACG AGCACCGCCTCAAGCTACAGAAGGAGGTGGAGACGCATGCCAACAACTCGTCCATCGAGC TGGAGAAGCTGGCCAAGAAGCAAGTGGCTATCATAGAAAAGGAGGCAAAGGTAGCTGCAG CAGATGAGAAGAAGTTCCAGCAACAGATCTTGGCCCAGCAGAAGAAAGACTTGACAACTT TCTTAGAAAGTCAGAAGAAGCAGTATAAGATTTGTAAGGAAAAAATAAAAGAGGAGATGA ATGAGGACCATAGCACACCCAAGAAAGAAAAGCAGGAGCGGATATCCAAGCATAAAGAGA ACTTGCAGCACACACAGGCCGAAGAGGAAGCCCACCTTCTCACTCAGCAGAGACTGTACT ACGACAAAAACTGTCGTTTCTTCAAGCGGAAAATAATGATCAAGCGGCATGAGGTGGAGC AGCAGAACATTCGGGAGGAACTAAATAAAAAGAGGACCCAGAAGGAGATGGAGCATGCCA TGCTGATCCGGCACGATGAGTCCACTCGAGAGCTGGAGTACAGGCAGCTGCACACGTTAC AGAAACTCCGCATGGATCTGATCCGGCTACAGCACCAGACTGAACTGGAAAACCAGCTGG AGTACAATAAGAGGCGAGAAAGGGAACTGCACAGAAAGCATGTCATGGAACTTCGGCAAC AGCCAAAAAACTTAAAGGCCATGGAAATGCAAATTAAAAAACAGTTTCAGGACACTTGCA AAGTACAGACCAAACAGTATAAAGCACTCAAGAATCACCAGTTGGAAGTTACTCCAAAGA ATGAGCACAAAACAATCTTAAAGACACTGAAAGATGAGCAGACGCGAAAACTTGCCATTT TGGCAGAGCAGTATGAACAGAGTATAAATGAAATGATGGCCTCTCAAGCGTTACGGCTAG ATGAGGCTCAAGAAGCAGAATGCCAGGCCTTGAGGCTACAGCTCCAGCAGGAAATGGAGC TGCTCAATGCCTACCAGAGCAAAATCAAGATGCAGACAGAGGCACAACATGAACGTGAGC TCCAGAAGCTAGAGCAGAGGGTGTCTCTGCGCAGAGCACATCTTGAGCAGAAGATTGAAG AAGAGCTGGCTGCCCTTCAGAAGGAACGCAGCGAGAGAATAAAGTACCTATTGGAAAGGC AAGAGCGAGAGATTGAAACTTTTGACATGGAGAGCCTCAGAATGGGATTTGGGAATTTGG TTACATTAGATTTTCCTAAGGAGGACTATAGATGAGATTAAATTTTTTTGCCATTTACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1550-1733, - strand, RNAz p=0.985485 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1550-1733, - strand, RNAz p=0.985485 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 1-529, gnl|bosTau2|chr17 (32078124-32078652) | |
| 1-529, gnl|Hg17|chr12 (117090858-117090330) | |
| 1-529, gnl|Mm7|chr5 (116470398-116470931) | |
| 763-894, gnl|bosTau2|chr17 (32088940-32089071) | |
| 763-894, gnl|canFam2|chr26 (17581557-17581683) | |
| 763-894, gnl|danRer3|chrUn (94601591-94601477) | |
| 763-894, gnl|dasNov1|scaffold_11760 (1768-1894) | |
| 763-894, gnl|echTel1|scaffold_312025 (5210-5336) | |
| 763-894, gnl|fr1|chrUn (222785245-222785359) | |
| 763-894, gnl|galGal2|chr15 (9807258-9807136) | |
| 763-894, gnl|hg17|chr12 (117077713-117077839) | |
| 763-894, gnl|Hg17|chr12 (117077856-117077725) | |
| 763-894, gnl|loxAfr1|scaffold_9043 (36477-36604) | |
| 763-894, gnl|mm7|chr5 (116482383-116482258) | |
| 763-894, gnl|Mm7|chr5 (116482239-116482370) | |
| 763-894, gnl|monDom2|scaffold_101 (2539199-2539082) | |
| 763-894, gnl|oryCun1|scaffold_180931 (3957-4083) | |
| 763-894, gnl|panTro1|chr10 (120067127-120067253) | |
| 763-894, gnl|rheMac2|chr5 (111770234-111770110) | |
| 763-894, gnl|rn3|chr12 (40388470-40388593) | |
| 763-894, gnl|tetNig1|chr12 (4433749-4433635) | |
| 763-894, gnl|xenTro1|scaffold_2 (617301-617425) | |
| 1096-1338, gnl|bosTau2|chr17 (32101190-32101432) | |
| 1096-1338, gnl|canFam2|chr26 (17569066-17569312) | |
| 1096-1338, gnl|danRer3|chrUn (94610019-94609773) | |
| 1096-1338, gnl|dasNov1|scaffold_2725 (137666-137420) | |
| 1096-1338, gnl|echTel1|scaffold_286060 (11376-11622) | |
| 1096-1338, gnl|fr1|chrUn (222783807-222784053) | |
| 1096-1338, gnl|galGal2|chr15 (9810662-9810419) | |
| 1096-1338, gnl|hg17|chr12 (117062309-117062555) | |
| 1096-1338, gnl|Hg17|chr12 (117062554-117062312) | |
| 1096-1338, gnl|loxAfr1|scaffold_27422 (19087-19333) | |
| 1096-1338, gnl|mm7|chr5 (116493509-116493263) | |
| 1096-1338, gnl|Mm7|chr5 (116493262-116493504) | |
| 1096-1338, gnl|monDom2|scaffold_101 (2550062-2549818) | |
| 1096-1338, gnl|oryCun1|scaffold_130870 (5333-5579) | |
| 1096-1338, gnl|panTro1|chr10 (120051246-120051492) | |
| 1096-1338, gnl|rheMac2|chr11 (119119990-119120236) | |
| 1096-1338, gnl|rn3|chr12 (40376876-40377122) | |
| 1096-1338, gnl|tetNig1|chr12 (4435318-4435072) | |
| 1096-1338, gnl|xenTro1|scaffold_2 (610939-611185) | |
| 1344-1549, gnl|bosTau2|chr19 (14097803-14097598) | |
| 1344-1549, gnl|canFam2|chr9 (46964125-46964371) | |
| 1344-1549, gnl|danRer3|chrNA (9638682-9638915) | |
| 1344-1549, gnl|dasNov1|scaffold_2725 (139152-139389) | |
| 1344-1549, gnl|echTel1|scaffold_286060 (10913-10676) | |
| 1344-1549, gnl|fr1|chrUn (169707988-169707752) | |
| 1344-1549, gnl|galGal2|chr19 (5648349-5648605) | |
| 1344-1549, gnl|hg17|chr17 (24881533-24881781) | |
| 1344-1549, gnl|Hg17|chr17 (24881557-24881762) | |
| 1344-1549, gnl|loxAfr1|scaffold_70417 (6135-5884) | |
| 1344-1549, gnl|mm7|chr11 (77623432-77623184) | |
| 1344-1549, gnl|Mm7|chr11 (77623406-77623201) | |
| 1344-1549, gnl|monDom2|scaffold_44 (15635317-15635564) | |
| 1344-1549, gnl|oryCun1|scaffold_130870 (3983-3746) | |
| 1344-1549, gnl|panTro1|chr19 (28228659-28228908) | |
| 1344-1549, gnl|rheMac2|chr16 (24762989-24763237) | |
| 1344-1549, gnl|rn3|chr10 (66594490-66594738) | |
| 1344-1549, gnl|tetNig1|chr16 (3242631-3242396) | |
| 1344-1549, gnl|xenTro1|scaffold_370 (39832-40082) | |
| 1550-1733, gnl|bosTau2|chr17 (32110741-32110924) | |
| 1550-1733, gnl|canFam2|chr26 (17561186-17561398) | |
| 1550-1733, gnl|danRer3|chrUn (94615646-94615440) | |
| 1550-1733, gnl|dasNov1|scaffold_69196 (1019-1220) | |
| 1550-1733, gnl|echTel1|scaffold_286060 (4346-4559) | |
| 1550-1733, gnl|fr1|chrUn (222782201-222782377) | |
| 1550-1733, gnl|galGal2|chr15 (9812071-9811859) | |
| 1550-1733, gnl|hg17|chr12 (117052746-117052958) | |
| 1550-1733, gnl|Hg17|chr12 (117052935-117052752) | |
| 1550-1733, gnl|loxAfr1|scaffold_212800 (524-738) | |
| 1550-1733, gnl|mm7|chr5 (116501984-116501774) | |
| 1550-1733, gnl|Mm7|chr5 (116501795-116501978) | |
| 1550-1733, gnl|monDom2|scaffold_101 (2579496-2579285) | |
| 1550-1733, gnl|oryCun1|scaffold_204194 (68950-69151) | |
| 1550-1733, gnl|panTro1|chr10 (120041644-120041856) | |
| 1550-1733, gnl|rheMac2|chr11 (119108898-119109110) | |
| 1550-1733, gnl|rn3|chr12 (40367922-40368131) | |
| 1550-1733, gnl|tetNig1|chr12 (4435978-4435775) | |
| 1550-1733, gnl|xenTro1|scaffold_2 (603304-603501) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-529, gnl|bosTau2|chr17 (32078124-32078652) | |
| 1-529, gnl|Hg17|chr12 (117090858-117090330) | |
| 1-529, gnl|Mm7|chr5 (116470398-116470931) | |
| 763-894, gnl|bosTau2|chr17 (32088940-32089071) | |
| 763-894, gnl|canFam2|chr26 (17581557-17581683) | |
| 763-894, gnl|danRer3|chrUn (94601591-94601477) | |
| 763-894, gnl|dasNov1|scaffold_11760 (1768-1894) | |
| 763-894, gnl|echTel1|scaffold_312025 (5210-5336) | |
| 763-894, gnl|fr1|chrUn (222785245-222785359) | |
| 763-894, gnl|galGal2|chr15 (9807258-9807136) | |
| 763-894, gnl|hg17|chr12 (117077713-117077839) | |
| 763-894, gnl|Hg17|chr12 (117077856-117077725) | |
| 763-894, gnl|loxAfr1|scaffold_9043 (36477-36604) | |
| 763-894, gnl|mm7|chr5 (116482383-116482258) | |
| 763-894, gnl|Mm7|chr5 (116482239-116482370) | |
| 763-894, gnl|monDom2|scaffold_101 (2539199-2539082) | |
| 763-894, gnl|oryCun1|scaffold_180931 (3957-4083) | |
| 763-894, gnl|panTro1|chr10 (120067127-120067253) | |
| 763-894, gnl|rheMac2|chr5 (111770234-111770110) | |
| 763-894, gnl|rn3|chr12 (40388470-40388593) | |
| 763-894, gnl|tetNig1|chr12 (4433749-4433635) | |
| 763-894, gnl|xenTro1|scaffold_2 (617301-617425) | |
| 1096-1338, gnl|bosTau2|chr17 (32101190-32101432) | |
| 1096-1338, gnl|canFam2|chr26 (17569066-17569312) | |
| 1096-1338, gnl|danRer3|chrUn (94610019-94609773) | |
| 1096-1338, gnl|dasNov1|scaffold_2725 (137666-137420) | |
| 1096-1338, gnl|echTel1|scaffold_286060 (11376-11622) | |
| 1096-1338, gnl|fr1|chrUn (222783807-222784053) | |
| 1096-1338, gnl|galGal2|chr15 (9810662-9810419) | |
| 1096-1338, gnl|hg17|chr12 (117062309-117062555) | |
| 1096-1338, gnl|Hg17|chr12 (117062554-117062312) | |
| 1096-1338, gnl|loxAfr1|scaffold_27422 (19087-19333) | |
| 1096-1338, gnl|mm7|chr5 (116493509-116493263) | |
| 1096-1338, gnl|Mm7|chr5 (116493262-116493504) | |
| 1096-1338, gnl|monDom2|scaffold_101 (2550062-2549818) | |
| 1096-1338, gnl|oryCun1|scaffold_130870 (5333-5579) | |
| 1096-1338, gnl|panTro1|chr10 (120051246-120051492) | |
| 1096-1338, gnl|rheMac2|chr11 (119119990-119120236) | |
| 1096-1338, gnl|rn3|chr12 (40376876-40377122) | |
| 1096-1338, gnl|tetNig1|chr12 (4435318-4435072) | |
| 1096-1338, gnl|xenTro1|scaffold_2 (610939-611185) | |
| 1344-1549, gnl|bosTau2|chr19 (14097803-14097598) | |
| 1344-1549, gnl|canFam2|chr9 (46964125-46964371) | |
| 1344-1549, gnl|danRer3|chrNA (9638682-9638915) | |
| 1344-1549, gnl|dasNov1|scaffold_2725 (139152-139389) | |
| 1344-1549, gnl|echTel1|scaffold_286060 (10913-10676) | |
| 1344-1549, gnl|fr1|chrUn (169707988-169707752) | |
| 1344-1549, gnl|galGal2|chr19 (5648349-5648605) | |
| 1344-1549, gnl|hg17|chr17 (24881533-24881781) | |
| 1344-1549, gnl|Hg17|chr17 (24881557-24881762) | |
| 1344-1549, gnl|loxAfr1|scaffold_70417 (6135-5884) | |
| 1344-1549, gnl|mm7|chr11 (77623432-77623184) | |
| 1344-1549, gnl|Mm7|chr11 (77623406-77623201) | |
| 1344-1549, gnl|monDom2|scaffold_44 (15635317-15635564) | |
| 1344-1549, gnl|oryCun1|scaffold_130870 (3983-3746) | |
| 1344-1549, gnl|panTro1|chr19 (28228659-28228908) | |
| 1344-1549, gnl|rheMac2|chr16 (24762989-24763237) | |
| 1344-1549, gnl|rn3|chr10 (66594490-66594738) | |
| 1344-1549, gnl|tetNig1|chr16 (3242631-3242396) | |
| 1344-1549, gnl|xenTro1|scaffold_370 (39832-40082) | |
| 1550-1733, gnl|bosTau2|chr17 (32110741-32110924) | |
| 1550-1733, gnl|canFam2|chr26 (17561186-17561398) | |
| 1550-1733, gnl|danRer3|chrUn (94615646-94615440) | |
| 1550-1733, gnl|dasNov1|scaffold_69196 (1019-1220) | |
| 1550-1733, gnl|echTel1|scaffold_286060 (4346-4559) | |
| 1550-1733, gnl|fr1|chrUn (222782201-222782377) | |
| 1550-1733, gnl|galGal2|chr15 (9812071-9811859) | |
| 1550-1733, gnl|hg17|chr12 (117052746-117052958) | |
| 1550-1733, gnl|Hg17|chr12 (117052935-117052752) | |
| 1550-1733, gnl|loxAfr1|scaffold_212800 (524-738) | |
| 1550-1733, gnl|mm7|chr5 (116501984-116501774) | |
| 1550-1733, gnl|Mm7|chr5 (116501795-116501978) | |
| 1550-1733, gnl|monDom2|scaffold_101 (2579496-2579285) | |
| 1550-1733, gnl|oryCun1|scaffold_204194 (68950-69151) | |
| 1550-1733, gnl|panTro1|chr10 (120041644-120041856) | |
| 1550-1733, gnl|rheMac2|chr11 (119108898-119109110) | |
| 1550-1733, gnl|rn3|chr12 (40367922-40368131) | |
| 1550-1733, gnl|tetNig1|chr12 (4435978-4435775) | |
| 1550-1733, gnl|xenTro1|scaffold_2 (603304-603501) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cst (0.280073) | |
| ece (0.229305) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cje (0.165235) | |
| cki (0.165235) | |
| spl (0.143184) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.280073) | |
| ece (0.229305) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cje (0.165235) | |
| cki (0.165235) | |
| spl (0.143184) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |