Non-Coding RNA Search

Ss1.1-Lng1-LNG010028F05.5

Sequence:


               
               GGCTCAGGAAGGCATGCTGGCCAACCTAGTGGAGCAGAACATCTCAGTGCGGCGGCGCCA
GGGCGTCAGCATTGGTCGGCTCCACAAGCAGCGGAAGCCCGACCGGCGGAAACGGTCACG
CCCCTACAAAGCCAAGCGCCAGTGAGGACTGCTGGCCCTGACCCTGCCACCTGCTCTTGC
CGTGTGGCCCTCACCAGGGCTCCTTCCCTGCCCCAGTCCCCCTCTTCCCAGTATTACCGA
ATAGTTCCGGTCACAGAGCCCAGACTCTGGGAATGGGAGCCAGGCTGGGATTCTCTGCGT
TCAGTGCTCTGGAAGCAGCAGCTGGAGCTGGGGCACAGTGAGGTGCTGCAGCCTCCTCCA
CAGCTGGCTGTGGAGCGGTAGGTCCTGGCCTTTCTGCCTGGGCAGCAGAATACATATATT
TTACCTACAGAGACATCTATTTTTCTGGGCTCTAACCCATCTTGCCACCACTGTGTTGCA
TAGTCAGCTTCATGACTCTGCATTCTCACCTAACAGGTGTCATCCTGGAGAGCTGGGGCC
ACTCCTACAGGGTCAAAGCTGGGGGCCTGGTTGGGCAGTGGGCCCTCTGCTCTCGCCCCT
GTTGTGATGAGGTCAGGTCTGCTCTTCACTCCTGGAAGAGCTCCAAACTCAGGGACCCGG
CTGCTGGGCTAGACTGGGAGTGCGGTGTCCCAGCACGGGATGAGCAGCCTGTTGTGGGCC
CGTGACCTGAGCAGAGAGAAGTGTTTGAGCTGTGTGGTGGCCTGTAAACTTCCTGGTTCC
AGCCAGGCTTGTCCAGACTGCTCTCTGTGGCAGGCCCTGGGCTCTTTTGTCTTCAGTGTT
GTGGCCCTGGCAAGTGGCCTGCCTTGGGCTCCTGGGGTCTATCCCTGGGGCTCAGAGGAG
CCCCTTGCCCAGCCCCTCAGTATTACCGTGTCTCCCTCCTCTTTGGGGCAGTAGAGACAG
GGGTGCTGGCGGGAAGCTGGCACCACTCAGCTCTCCTTGCTGTGCCAGCTTTCTCAGTCT
CTGCAAGGCACTCAGGGTGGGGGACAGCAGGACCAGGACAACCAGTTGGAGCCCCCCGTG
TTCCCAGGGGGCATGATGCCAAGGGCTAATGGGCCCAGCACTGCCTCTAGAACTTGGGCC
CCAAATGTGGCCTCGTGGCTTCTGTCATGTGGCTTTGAAGGTGATCCAAGCAGGCCCCTT
ATCTGTACATAGTGACCTGGGGTAGTTGGTGGCTGACAGGCATGGCAGCTGCCTCTCTAC
GCTAAACGTAACCCAACCCTTCTGGCCCCTGTAAATATTGGATCAATGAATGAATAAAAC
TCCTAAGAAATGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCAGGAAGGCATGCTGGCCAACCTAGTGGAGCAGAACATCTCAGTGCGGCGGCGCCA
GGGCGTCAGCATTGGTCGGCTCCACAAGCAGCGGAAGCCCGACCGGCGGAAACGGTCACG
CCCCTACAAAGCCAAGCGCCAGTGAGGACTGCTGGCCCTGACCCTGCCACCTGCTCTTGC
CGTGTGGCCCTCACCAGGGCTCCTTCCCTGCCCCAGTCCCCCTCTTCCCAGTATTACCGA
ATAGTTCCGGTCACAGAGCCCAGACTCTGGGAATGGGAGCCAGGCTGGGATTCTCTGCGT
TCAGTGCTCTGGAAGCAGCAGCTGGAGCTGGGGCACAGTGAGGTGCTGCAGCCTCCTCCA
CAGCTGGCTGTGGAGCGGTAGGTCCTGGCCTTTCTGCCTGGGCAGCAGAATACATATATT
TTACCTACAGAGACATCTATTTTTCTGGGCTCTAACCCATCTTGCCACCACTGTGTTGCA
TAGTCAGCTTCATGACTCTGCATTCTCACCTAACAGGTGTCATCCTGGAGAGCTGGGGCC
ACTCCTACAGGGTCAAAGCTGGGGGCCTGGTTGGGCAGTGGGCCCTCTGCTCTCGCCCCT
GTTGTGATGAGGTCAGGTCTGCTCTTCACTCCTGGAAGAGCTCCAAACTCAGGGACCCGG
CTGCTGGGCTAGACTGGGAGTGCGGTGTCCCAGCACGGGATGAGCAGCCTGTTGTGGGCC
CGTGACCTGAGCAGAGAGAAGTGTTTGAGCTGTGTGGTGGCCTGTAAACTTCCTGGTTCC
AGCCAGGCTTGTCCAGACTGCTCTCTGTGGCAGGCCCTGGGCTCTTTTGTCTTCAGTGTT
GTGGCCCTGGCAAGTGGCCTGCCTTGGGCTCCTGGGGTCTATCCCTGGGGCTCAGAGGAG
CCCCTTGCCCAGCCCCTCAGTATTACCGTGTCTCCCTCCTCTTTGGGGCAGTAGAGACAG
GGGTGCTGGCGGGAAGCTGGCACCACTCAGCTCTCCTTGCTGTGCCAGCTTTCTCAGTCT
CTGCAAGGCACTCAGGGTGGGGGACAGCAGGACCAGGACAACCAGTTGGAGCCCCCCGTG
TTCCCAGGGGGCATGATGCCAAGGGCTAATGGGCCCAGCACTGCCTCTAGAACTTGGGCC
CCAAATGTGGCCTCGTGGCTTCTGTCATGTGGCTTTGAAGGTGATCCAAGCAGGCCCCTT
ATCTGTACATAGTGACCTGGGGTAGTTGGTGGCTGACAGGCATGGCAGCTGCCTCTCTAC
GCTAAACGTAACCCAACCCTTCTGGCCCCTGTAAATATTGGATCAATGAATGAATAAAAC
TCCTAAGAAATGAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               305-462, - strand, RNAz p=0.972414
               

               
               808-1038, + strand, RNAz p=0.997743

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-462, - strand, RNAz p=0.972414
               

               
               808-1038, + strand, RNAz p=0.997743

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               766-883, + strand, RNAmicro p=0.991271
               

               
               896-1050, - strand, RNAmicro p=0.975971

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               766-883, + strand, RNAmicro p=0.991271
               

               
               896-1050, - strand, RNAmicro p=0.975971

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D87462, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D87462, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               305-1322, gnl|bosTau2|chr22 (36986659-36985659)
               

               
               305-1322, gnl|Hg17|chr3 (52411149-52410085)
               

               
               305-1322, gnl|Mm7|chr14 (28688666-28689564)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               305-1322, gnl|bosTau2|chr22 (36986659-36985659)
               

               
               305-1322, gnl|Hg17|chr3 (52411149-52410085)
               

               
               305-1322, gnl|Mm7|chr14 (28688666-28689564)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fcc (0.39557)
               

               
               csp (0.322373)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               csp (0.322373)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	305-462, - strand, RNAz p=0.972414
	808-1038, + strand, RNAz p=0.997743

	766-883, + strand, RNAmicro p=0.991271
	896-1050, - strand, RNAmicro p=0.975971

	305-1322, gnl\|bosTau2\|chr22 (36986659-36985659)
	305-1322, gnl\|Hg17\|chr3 (52411149-52410085)
	305-1322, gnl\|Mm7\|chr14 (28688666-28689564)

	fcc (0.39557)
	csp (0.322373)
	nlu (0.191681)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	eli (0.151814)
	pty (0.142714)
	lnt (0.142308)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)