Ss1.1-Lng1-LNG010028F07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGAGAAGGGCAAACAGTACATGGCAGCAGGAATCAACCAGGGCCCTAGAGCACTGAG GCAGAATCAGGAGAACCTGGAGGAGACAGAGGCTGAAGACAATTAAAATCAGCATCTAAA CTGGCTCCCAACCCTGGGTAAAAGTCCCAGAGAGAAACTTATATCATGAAATTAATCGCC ATCCTTTTCCTTTGCTCCAGGCTGCTACCAAGTTTAACTCAGGAGTCTTCGCAAGAAATT GACTGCAACCACCAAGATGTATTTAAGGCTGTGGACACGGCTTTGAAGAAATATAACAGT GGAAACAAAAGTGGCAACCAGTTTGTATTGTACCGAATAACCGAAGTCACCAAAATTGAT AATCCTGACATATTTTATTCCTTCAAGTACGAAATCAAGGAGGGTGACTGTCTTGTTCAA AGTGACAAAACCTGGCAGGACTGTGATTACAAAGACCCTGCACAAGCTGCCACAGGAGAA TGCACAGTAACCGTGGCGAAGAGAGGCAATGAGAAGTTCTCCGTGGCTACCCAGACCTGC CAGATTACTCCAGCTGAGGGCCCTGTGGTGACAGCCCAGTATGACTGTCTGGGCTGCCTG CACCCCATATCAACCTCAAGCCCTGAACTGCAACCTGTTCTGAGACACACCATTCAACAC TTTAACAACAAGAGTGATCATCTCCACCTCTTTCATCTTCATGAAATAAAAAGTGCCCAA AGACAGGTGGTGGCCGGATGGAACTATGAGATTAATTATTTTATTGTGCAAACAAATTGT TCCAAGGAGAAGTTTCCATCTTTAACTCCAGAGTGCACGTCCCTTTCAAATGGTGATATC CATGAATGTACAGATAAAGCACATGTGGATCTTCAGCTAAGAGTTGCTTCCTTCTCACAG GAATGTAGCCTTTATCAAGGGAAGGATTTTGTACAACCACTTGTCAAGATTTGCGCTGGC TGCCCCAGAGATATACCTGTCAACAGTCCAGAGCTGGAGGAGCCTCTAAATCATTCCATC GCCAAGCTTAATGCAGAGAACAATGCAGTCTTCTATTTCAAGATTGACCTTGTGGAAAAA GCAACAGTACAGGTGGTGGCTGGAAAAAAATATTCTATTGTGTTCACGGCCAGGGAAACC ACATGTTCCAAGCAAAGTAATGAAGAGTTGACAGAAAGTTGTGAGATCAAGAAACCTGGT CAAATTCTAAAGTGTAATGCTTCTGTTTACGTGGTACCTTGGGAGAAAAAAATCTACCCT ACTGTCAAATGTCAATTACTTGGACAGACCTCACTGATGAAAAGGCCTCCAGGTTTTTCA CCTTTCCGATCAGTACAAGTGGAGAAAACTAAAGAAGGAGTAACTAGGCACCTAAGGTCC TGCGAGTACAAGGGCCGGCAGCAGGAGGCAGGGGCAGAGCTGGTACCTGAGAGTGAGGTC AATTGACCTGTGGGCAGAATCTCCATGCCTGGCACAGTAGCCCCGACAACCTCTGTCAGC AGCCCTGCGTGGAAGGACGAGAAGATGGGATAGAATTTAAATAGAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGAGAAGGGCAAACAGTACATGGCAGCAGGAATCAACCAGGGCCCTAGAGCACTGAG GCAGAATCAGGAGAACCTGGAGGAGACAGAGGCTGAAGACAATTAAAATCAGCATCTAAA CTGGCTCCCAACCCTGGGTAAAAGTCCCAGAGAGAAACTTATATCATGAAATTAATCGCC ATCCTTTTCCTTTGCTCCAGGCTGCTACCAAGTTTAACTCAGGAGTCTTCGCAAGAAATT GACTGCAACCACCAAGATGTATTTAAGGCTGTGGACACGGCTTTGAAGAAATATAACAGT GGAAACAAAAGTGGCAACCAGTTTGTATTGTACCGAATAACCGAAGTCACCAAAATTGAT AATCCTGACATATTTTATTCCTTCAAGTACGAAATCAAGGAGGGTGACTGTCTTGTTCAA AGTGACAAAACCTGGCAGGACTGTGATTACAAAGACCCTGCACAAGCTGCCACAGGAGAA TGCACAGTAACCGTGGCGAAGAGAGGCAATGAGAAGTTCTCCGTGGCTACCCAGACCTGC CAGATTACTCCAGCTGAGGGCCCTGTGGTGACAGCCCAGTATGACTGTCTGGGCTGCCTG CACCCCATATCAACCTCAAGCCCTGAACTGCAACCTGTTCTGAGACACACCATTCAACAC TTTAACAACAAGAGTGATCATCTCCACCTCTTTCATCTTCATGAAATAAAAAGTGCCCAA AGACAGGTGGTGGCCGGATGGAACTATGAGATTAATTATTTTATTGTGCAAACAAATTGT TCCAAGGAGAAGTTTCCATCTTTAACTCCAGAGTGCACGTCCCTTTCAAATGGTGATATC CATGAATGTACAGATAAAGCACATGTGGATCTTCAGCTAAGAGTTGCTTCCTTCTCACAG GAATGTAGCCTTTATCAAGGGAAGGATTTTGTACAACCACTTGTCAAGATTTGCGCTGGC TGCCCCAGAGATATACCTGTCAACAGTCCAGAGCTGGAGGAGCCTCTAAATCATTCCATC GCCAAGCTTAATGCAGAGAACAATGCAGTCTTCTATTTCAAGATTGACCTTGTGGAAAAA GCAACAGTACAGGTGGTGGCTGGAAAAAAATATTCTATTGTGTTCACGGCCAGGGAAACC ACATGTTCCAAGCAAAGTAATGAAGAGTTGACAGAAAGTTGTGAGATCAAGAAACCTGGT CAAATTCTAAAGTGTAATGCTTCTGTTTACGTGGTACCTTGGGAGAAAAAAATCTACCCT ACTGTCAAATGTCAATTACTTGGACAGACCTCACTGATGAAAAGGCCTCCAGGTTTTTCA CCTTTCCGATCAGTACAAGTGGAGAAAACTAAAGAAGGAGTAACTAGGCACCTAAGGTCC TGCGAGTACAAGGGCCGGCAGCAGGAGGCAGGGGCAGAGCTGGTACCTGAGAGTGAGGTC AATTGACCTGTGGGCAGAATCTCCATGCCTGGCACAGTAGCCCCGACAACCTCTGTCAGC AGCCCTGCGTGGAAGGACGAGAAGATGGGATAGAATTTAAATAGAGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-356, gnl|bosTau2|chr1 (49465964-49466328) | |
| 1-356, gnl|Hg17|chr3 (187917859-187918227) | |
| 1-356, gnl|Mm7|chr16 (22718670-22719040) | |
| 358-469, gnl|bosTau2|chr1 (49468444-49468555) | |
| 358-469, gnl|canFam2|chr34 (22301187-22301398) | |
| 358-469, gnl|echTel1|scaffold_320665 (6018-5805) | |
| 358-469, gnl|hg17|chr3 (187920499-187920718) | |
| 358-469, gnl|Hg17|chr3 (187920596-187920707) | |
| 358-469, gnl|loxAfr1|scaffold_46905 (1551-1327) | |
| 358-469, gnl|mm7|chr16 (22720684-22720908) | |
| 358-469, gnl|Mm7|chr16 (22720786-22720897) | |
| 358-469, gnl|oryCun1|scaffold_127946 (4295-4510) | |
| 358-469, gnl|panTro1|chr2 (192011798-192012017) | |
| 358-469, gnl|rheMac2|chr2 (179068760-179068979) | |
| 358-469, gnl|rn3|chr11 (80087340-80087125) | |
| 549-728, gnl|bosTau2|chr1 (49473236-49473415) | |
| 549-728, gnl|canFam2|chr34 (22305997-22306139) | |
| 549-728, gnl|dasNov1|scaffold_5752 (2042-1900) | |
| 549-728, gnl|echTel1|scaffold_201407 (1842-1976) | |
| 549-728, gnl|hg17|chr3 (187925547-187925689) | |
| 549-728, gnl|Hg17|chr3 (187925574-187925753) | |
| 549-728, gnl|loxAfr1|scaffold_108573 (1872-2014) | |
| 549-728, gnl|mm7|chr16 (22726270-22726412) | |
| 549-728, gnl|Mm7|chr16 (22726297-22726476) | |
| 549-728, gnl|oryCun1|scaffold_127946 (9826-9966) | |
| 549-728, gnl|panTro1|chr2 (192016836-192016978) | |
| 549-728, gnl|rheMac2|chr2 (179073439-179073581) | |
| 549-728, gnl|rn3|chr11 (80079771-80079629) | |
| 894-1094, gnl|bosTau2|chr1 (49479933-49480132) | |
| 894-1094, gnl|canFam2|chr34 (22315197-22315601) | |
| 894-1094, gnl|echTel1|scaffold_298580 (2372-2764) | |
| 894-1094, gnl|hg17|chr3 (187932781-187933188) | |
| 894-1094, gnl|Hg17|chr3 (187932968-187933167) | |
| 894-1094, gnl|loxAfr1|scaffold_72198 (9782-9380) | |
| 894-1094, gnl|mm7|chr16 (22733060-22733442) | |
| 894-1094, gnl|Mm7|chr16 (22733226-22733427) | |
| 894-1094, gnl|monDom2|scaffold_69 (7326013-7325635) | |
| 894-1094, gnl|oryCun1|scaffold_206335 (52469-52078) | |
| 894-1094, gnl|panTro1|chr2 (192024011-192024418) | |
| 894-1094, gnl|rheMac2|chr2 (179080681-179081088) | |
| 894-1094, gnl|rn3|chr11 (80073767-80073387) | |
| 1368-1548, gnl|bosTau2|chr1 (49493325-49493501) | |
| 1368-1548, gnl|canFam2|chr34 (22326210-22326506) | |
| 1368-1548, gnl|dasNov1|scaffold_6907 (79055-78762) | |
| 1368-1548, gnl|echTel1|scaffold_298580 (7958-8257) | |
| 1368-1548, gnl|hg17|chr3 (187944181-187944476) | |
| 1368-1548, gnl|Hg17|chr3 (187944198-187944381) | |
| 1368-1548, gnl|loxAfr1|scaffold_72198 (2521-2222) | |
| 1368-1548, gnl|mm7|chr16 (22740085-22740340) | |
| 1368-1548, gnl|Mm7|chr16 (22740101-22740246) | |
| 1368-1548, gnl|oryCun1|scaffold_206335 (43682-43382) | |
| 1368-1548, gnl|panTro1|chr2 (192035822-192036117) | |
| 1368-1548, gnl|rheMac2|chr2 (179092309-179092609) | |
| 1368-1548, gnl|rn3|chr11 (80066566-80066313) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-356, gnl|bosTau2|chr1 (49465964-49466328) | |
| 1-356, gnl|Hg17|chr3 (187917859-187918227) | |
| 1-356, gnl|Mm7|chr16 (22718670-22719040) | |
| 358-469, gnl|bosTau2|chr1 (49468444-49468555) | |
| 358-469, gnl|canFam2|chr34 (22301187-22301398) | |
| 358-469, gnl|echTel1|scaffold_320665 (6018-5805) | |
| 358-469, gnl|hg17|chr3 (187920499-187920718) | |
| 358-469, gnl|Hg17|chr3 (187920596-187920707) | |
| 358-469, gnl|loxAfr1|scaffold_46905 (1551-1327) | |
| 358-469, gnl|mm7|chr16 (22720684-22720908) | |
| 358-469, gnl|Mm7|chr16 (22720786-22720897) | |
| 358-469, gnl|oryCun1|scaffold_127946 (4295-4510) | |
| 358-469, gnl|panTro1|chr2 (192011798-192012017) | |
| 358-469, gnl|rheMac2|chr2 (179068760-179068979) | |
| 358-469, gnl|rn3|chr11 (80087340-80087125) | |
| 549-728, gnl|bosTau2|chr1 (49473236-49473415) | |
| 549-728, gnl|canFam2|chr34 (22305997-22306139) | |
| 549-728, gnl|dasNov1|scaffold_5752 (2042-1900) | |
| 549-728, gnl|echTel1|scaffold_201407 (1842-1976) | |
| 549-728, gnl|hg17|chr3 (187925547-187925689) | |
| 549-728, gnl|Hg17|chr3 (187925574-187925753) | |
| 549-728, gnl|loxAfr1|scaffold_108573 (1872-2014) | |
| 549-728, gnl|mm7|chr16 (22726270-22726412) | |
| 549-728, gnl|Mm7|chr16 (22726297-22726476) | |
| 549-728, gnl|oryCun1|scaffold_127946 (9826-9966) | |
| 549-728, gnl|panTro1|chr2 (192016836-192016978) | |
| 549-728, gnl|rheMac2|chr2 (179073439-179073581) | |
| 549-728, gnl|rn3|chr11 (80079771-80079629) | |
| 894-1094, gnl|bosTau2|chr1 (49479933-49480132) | |
| 894-1094, gnl|canFam2|chr34 (22315197-22315601) | |
| 894-1094, gnl|echTel1|scaffold_298580 (2372-2764) | |
| 894-1094, gnl|hg17|chr3 (187932781-187933188) | |
| 894-1094, gnl|Hg17|chr3 (187932968-187933167) | |
| 894-1094, gnl|loxAfr1|scaffold_72198 (9782-9380) | |
| 894-1094, gnl|mm7|chr16 (22733060-22733442) | |
| 894-1094, gnl|Mm7|chr16 (22733226-22733427) | |
| 894-1094, gnl|monDom2|scaffold_69 (7326013-7325635) | |
| 894-1094, gnl|oryCun1|scaffold_206335 (52469-52078) | |
| 894-1094, gnl|panTro1|chr2 (192024011-192024418) | |
| 894-1094, gnl|rheMac2|chr2 (179080681-179081088) | |
| 894-1094, gnl|rn3|chr11 (80073767-80073387) | |
| 1368-1548, gnl|bosTau2|chr1 (49493325-49493501) | |
| 1368-1548, gnl|canFam2|chr34 (22326210-22326506) | |
| 1368-1548, gnl|dasNov1|scaffold_6907 (79055-78762) | |
| 1368-1548, gnl|echTel1|scaffold_298580 (7958-8257) | |
| 1368-1548, gnl|hg17|chr3 (187944181-187944476) | |
| 1368-1548, gnl|Hg17|chr3 (187944198-187944381) | |
| 1368-1548, gnl|loxAfr1|scaffold_72198 (2521-2222) | |
| 1368-1548, gnl|mm7|chr16 (22740085-22740340) | |
| 1368-1548, gnl|Mm7|chr16 (22740101-22740246) | |
| 1368-1548, gnl|oryCun1|scaffold_206335 (43682-43382) | |
| 1368-1548, gnl|panTro1|chr2 (192035822-192036117) | |
| 1368-1548, gnl|rheMac2|chr2 (179092309-179092609) | |
| 1368-1548, gnl|rn3|chr11 (80066566-80066313) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cst (0.700182) | |
| fli (0.405762) | |
| cki (0.330469) | |
| sme (0.305437) | |
| eli (0.151814) | |
| lun (0.150489) | |
| nmm (0.132802) | |
| kid (0.129735) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.700182) | |
| fli (0.405762) | |
| cki (0.330469) | |
| sme (0.305437) | |
| eli (0.151814) | |
| lun (0.150489) | |
| nmm (0.132802) | |
| kid (0.129735) |