Ss1.1-Lng1-LNG010028F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCTGCCTCGAGAGTCTAGTACCAGTTTGCACCTGCGGTGGGGTGGGTCTGAAGCCCA CACCCGGAAACCTAGCGAGGTTGAAGTTGCGTCTTGGTTGTAGGGGCAACAACTTCTCCG AATCCTCTGCGATGGCGGCTTCTGGGAGTGGTATGGCCCAGAAAACGTGGGAATTAGCCA ACAACATGCAGGAAGCCCAGAGTATCGATGAAATCTACAAATACGACAAAAAACAGCAGC AAGAAATCCTGGCGGCGAAACCCTGGACTAAGGATCACCATTACTTTAAGTACTGCAAAA TCTCAGCATTGGCTCTGCTGAAAATGGTGATGCATGCCAGATCAGGAGGCAACTTGGAAG TGATGGGCTTGATGCTGGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTG CTTTGCCTGTAGAGGGCACTGAAACCCGAGTAAATGCTCAGGCTGCTGCATATGAGTACA TGGCTGCATACATAGAAAATGCCAAACAGGTTGGCCGCCTTGAAAATGCAATTGGCTGGT ATCATAGCCACCCTGGCTATGGCTGCTGGCTTTCTGGGATTGATGTTAGTACTCAGATGC TCAATCAGCAGTTCCAAGAACCATTCGTAGCAGTGGTAATTGACCCAACAAGAACAATAT CTGCAGGGAAAGTGAATCTTGGAGCCTTTAGGACATACCCAAAGGGCTACAAACCTCCTG ATGAAGGACCCTCTGAGTACCAGACTATCCCACTTAACAAAATAGAAGACTTTGGTGTAC ACTGCAAACAATACTATGCCTTAGAAGTCTCATATTTTAAGTCCTCTTTGGATCGAAAAT TGCTTGAGCTTTTGTGGAATAAATACTGGGTGAATACGCTGAGTTCCTCTAGCTTGCTTA CTAATGCAGACTATACCACCGGTCAGGTCTTTGATTTGTCTGAGAAATTAGAACAATCAG AAGCCCAGCTGGGACGAGGGAGTTTTATGTTGGGTTTAGAAACGCATGACAGAAAGTCAG AAGACAAACTTGCCAAAGCTACACGAGACAGCTGTAAAACTACCATAGAAGCTATCCATG GATTGATGTCTCAGGTTATTAAGGATAAACTATTTAATCAAATTAACATCTCTTAAACAA TCACAAAATAGTACTTTTGCCAGTATGAGAAAAATACGCAAGTAACAATTTAAAACCAGT TACCAAAAATACGATTAGAAGAATAAGGTGCTCTGAAGTGTCCTGAATATTAACATCCTA TAATAAAATTCTTTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCTGCCTCGAGAGTCTAGTACCAGTTTGCACCTGCGGTGGGGTGGGTCTGAAGCCCA CACCCGGAAACCTAGCGAGGTTGAAGTTGCGTCTTGGTTGTAGGGGCAACAACTTCTCCG AATCCTCTGCGATGGCGGCTTCTGGGAGTGGTATGGCCCAGAAAACGTGGGAATTAGCCA ACAACATGCAGGAAGCCCAGAGTATCGATGAAATCTACAAATACGACAAAAAACAGCAGC AAGAAATCCTGGCGGCGAAACCCTGGACTAAGGATCACCATTACTTTAAGTACTGCAAAA TCTCAGCATTGGCTCTGCTGAAAATGGTGATGCATGCCAGATCAGGAGGCAACTTGGAAG TGATGGGCTTGATGCTGGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTG CTTTGCCTGTAGAGGGCACTGAAACCCGAGTAAATGCTCAGGCTGCTGCATATGAGTACA TGGCTGCATACATAGAAAATGCCAAACAGGTTGGCCGCCTTGAAAATGCAATTGGCTGGT ATCATAGCCACCCTGGCTATGGCTGCTGGCTTTCTGGGATTGATGTTAGTACTCAGATGC TCAATCAGCAGTTCCAAGAACCATTCGTAGCAGTGGTAATTGACCCAACAAGAACAATAT CTGCAGGGAAAGTGAATCTTGGAGCCTTTAGGACATACCCAAAGGGCTACAAACCTCCTG ATGAAGGACCCTCTGAGTACCAGACTATCCCACTTAACAAAATAGAAGACTTTGGTGTAC ACTGCAAACAATACTATGCCTTAGAAGTCTCATATTTTAAGTCCTCTTTGGATCGAAAAT TGCTTGAGCTTTTGTGGAATAAATACTGGGTGAATACGCTGAGTTCCTCTAGCTTGCTTA CTAATGCAGACTATACCACCGGTCAGGTCTTTGATTTGTCTGAGAAATTAGAACAATCAG AAGCCCAGCTGGGACGAGGGAGTTTTATGTTGGGTTTAGAAACGCATGACAGAAAGTCAG AAGACAAACTTGCCAAAGCTACACGAGACAGCTGTAAAACTACCATAGAAGCTATCCATG GATTGATGTCTCAGGTTATTAAGGATAAACTATTTAATCAAATTAACATCTCTTAAACAA TCACAAAATAGTACTTTTGCCAGTATGAGAAAAATACGCAAGTAACAATTTAAAACCAGT TACCAAAAATACGATTAGAAGAATAAGGTGCTCTGAAGTGTCCTGAATATTAACATCCTA TAATAAAATTCTTTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 394-511, - strand, RNAz p=0.928164 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 394-511, - strand, RNAz p=0.928164 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-274, gnl|bosTau2|chr14 (18027331-18027603) | |
| 1-274, gnl|Hg17|chr8 (68136915-68136643) | |
| 1-274, gnl|Mm7|chr1 (10180667-10180399) | |
| 275-511, gnl|bosTau2|chr14 (18030114-18030350) | |
| 275-511, gnl|canFam2|chr29 (19578189-19578452) | |
| 275-511, gnl|canFam2|chr29 (19578194-19578353) | |
| 275-511, gnl|danRer3|chr24 (21264927-21264664) | |
| 275-511, gnl|danRer3|chr24 (21264923-21264763) | |
| 275-511, gnl|dasNov1|scaffold_57036 (5225-4962) | |
| 275-511, gnl|dasNov1|scaffold_57036 (5221-5061) | |
| 275-511, gnl|echTel1|scaffold_121856 (380-648) | |
| 275-511, gnl|echTel1|scaffold_121856 (391-544) | |
| 275-511, gnl|fr1|chrUn (87689643-87689391) | |
| 275-511, gnl|fr1|chrUn (87689639-87689479) | |
| 275-511, gnl|hg17|chr6 (93858942-93859102) | |
| 275-511, gnl|hg17|chr8 (68133995-68134258) | |
| 275-511, gnl|Hg17|chr8 (68134234-68133998) | |
| 275-511, gnl|loxAfr1|scaffold_53910 (11469-11595) | |
| 275-511, gnl|loxAfr1|scaffold_87184 (633-910) | |
| 275-511, gnl|mm7|chr1 (10177653-10177916) | |
| 275-511, gnl|mm7|chr1 (10177657-10177817) | |
| 275-511, gnl|Mm7|chr1 (10177892-10177656) | |
| 275-511, gnl|monDom2|scaffold_26 (30738530-30738690) | |
| 275-511, gnl|monDom2|scaffold_4 (94435802-94435532) | |
| 275-511, gnl|oryCun1|scaffold_209502 (38425-38162) | |
| 275-511, gnl|oryCun1|scaffold_209502 (38421-38261) | |
| 275-511, gnl|panTro1|chr5 (95601881-95602041) | |
| 275-511, gnl|panTro1|chr7 (70158370-70158633) | |
| 275-511, gnl|rheMac2|chr4 (89008708-89008858) | |
| 275-511, gnl|rheMac2|chr8 (69686083-69686346) | |
| 275-511, gnl|rn3|chr5 (8712283-8712019) | |
| 275-511, gnl|rn3|chr5 (8712279-8712119) | |
| 275-511, gnl|tetNig1|chr6 (2463636-2463397) | |
| 275-511, gnl|tetNig1|chr6 (2463636-2463476) | |
| 275-511, gnl|xenTro1|scaffold_109 (362967-363219) | |
| 275-511, gnl|xenTro1|scaffold_109 (362974-363128) | |
| 791-901, gnl|bosTau2|chr14 (18037393-18037503) | |
| 791-901, gnl|Hg17|chr8 (68126130-68126020) | |
| 791-901, gnl|Mm7|chr1 (10173439-10173329) | |
| 1050-1282, gnl|bosTau2|chr14 (18085723-18085966) | |
| 1050-1282, gnl|Hg17|chr8 (68118108-68117868) | |
| 1050-1282, gnl|Mm7|chr1 (10167794-10167559) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-274, gnl|bosTau2|chr14 (18027331-18027603) | |
| 1-274, gnl|Hg17|chr8 (68136915-68136643) | |
| 1-274, gnl|Mm7|chr1 (10180667-10180399) | |
| 275-511, gnl|bosTau2|chr14 (18030114-18030350) | |
| 275-511, gnl|canFam2|chr29 (19578189-19578452) | |
| 275-511, gnl|canFam2|chr29 (19578194-19578353) | |
| 275-511, gnl|danRer3|chr24 (21264927-21264664) | |
| 275-511, gnl|danRer3|chr24 (21264923-21264763) | |
| 275-511, gnl|dasNov1|scaffold_57036 (5225-4962) | |
| 275-511, gnl|dasNov1|scaffold_57036 (5221-5061) | |
| 275-511, gnl|echTel1|scaffold_121856 (380-648) | |
| 275-511, gnl|echTel1|scaffold_121856 (391-544) | |
| 275-511, gnl|fr1|chrUn (87689643-87689391) | |
| 275-511, gnl|fr1|chrUn (87689639-87689479) | |
| 275-511, gnl|hg17|chr6 (93858942-93859102) | |
| 275-511, gnl|hg17|chr8 (68133995-68134258) | |
| 275-511, gnl|Hg17|chr8 (68134234-68133998) | |
| 275-511, gnl|loxAfr1|scaffold_53910 (11469-11595) | |
| 275-511, gnl|loxAfr1|scaffold_87184 (633-910) | |
| 275-511, gnl|mm7|chr1 (10177653-10177916) | |
| 275-511, gnl|mm7|chr1 (10177657-10177817) | |
| 275-511, gnl|Mm7|chr1 (10177892-10177656) | |
| 275-511, gnl|monDom2|scaffold_26 (30738530-30738690) | |
| 275-511, gnl|monDom2|scaffold_4 (94435802-94435532) | |
| 275-511, gnl|oryCun1|scaffold_209502 (38425-38162) | |
| 275-511, gnl|oryCun1|scaffold_209502 (38421-38261) | |
| 275-511, gnl|panTro1|chr5 (95601881-95602041) | |
| 275-511, gnl|panTro1|chr7 (70158370-70158633) | |
| 275-511, gnl|rheMac2|chr4 (89008708-89008858) | |
| 275-511, gnl|rheMac2|chr8 (69686083-69686346) | |
| 275-511, gnl|rn3|chr5 (8712283-8712019) | |
| 275-511, gnl|rn3|chr5 (8712279-8712119) | |
| 275-511, gnl|tetNig1|chr6 (2463636-2463397) | |
| 275-511, gnl|tetNig1|chr6 (2463636-2463476) | |
| 275-511, gnl|xenTro1|scaffold_109 (362967-363219) | |
| 275-511, gnl|xenTro1|scaffold_109 (362974-363128) | |
| 791-901, gnl|bosTau2|chr14 (18037393-18037503) | |
| 791-901, gnl|Hg17|chr8 (68126130-68126020) | |
| 791-901, gnl|Mm7|chr1 (10173439-10173329) | |
| 1050-1282, gnl|bosTau2|chr14 (18085723-18085966) | |
| 1050-1282, gnl|Hg17|chr8 (68118108-68117868) | |
| 1050-1282, gnl|Mm7|chr1 (10167794-10167559) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| mgp (0.922722) | |
| cbe (0.717703) | |
| hea (0.613497) | |
| csk (0.562984) | |
| sug (0.509165) | |
| spc (0.453463) | |
| lin (0.436808) | |
| amn (0.417711) | |
| ssp (0.406559) | |
| bla (0.373042) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| nms (0.213858) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| isp (0.150376) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.922722) | |
| cbe (0.717703) | |
| hea (0.613497) | |
| csk (0.562984) | |
| sug (0.509165) | |
| spc (0.453463) | |
| lin (0.436808) | |
| amn (0.417711) | |
| ssp (0.406559) | |
| bla (0.373042) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| nms (0.213858) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| isp (0.150376) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |