Ss1.1-Lng1-LNG010029B03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGCCTTGCCCTTCCCATCCTCCCGCGGACGTCCGACTGTACCCGCTGCCATGGCGACG CTGCTGCGCGGGGCCCTGCGCCCCCTCCGCGCCTTCCAAGGCCGCGGGCAGCCGGCTGCA GATGTGCCCCTTCGTGCCACGAGCCATGGCACCGGCCTCCTCTACCCCGAACACATCCCC ACTTCCCTGCTGCAGAAGGCGCTGTTGGCCGCGGGCTCTGCCGTAATGGCCCTCTACGAC CCTTATCGCCACGACATGGTTGCAGTTCTAGGAGAGACCACAGGACGCCGAACCCTGAAG TTCCTCAGGGACCAGATGAAGAGGGATCCAGAGGGTGCCCAGATCCTGCAGGAGCGTCCC CGGATCTCGATGTCCACCCTTGACCTGGAGAAGCTCCGAAGCCTGCCTGAGGGCTCCTTT GGCTGCGAGTATCTCCGTTTCCTGGATGTGAATAGGGTCTCCCCAGACACCCGAGCACCG ACGCGATTCGTGGATGACGAGGAGCTGGCGTACGTGATCCAGCGGTACCGGGAAGTGCAC GACATGGTCCACACTCTGCTGGGGATGCCCACCAACATCCCGGGGGAGATCGTGGTGAAG TGGTTTGAGGCTGTCCAGACCGGCCTGCCCATGTGCGTCCTGAGTGCGCTCTTTGGCCCC ATCCGACTCAGCGCCCAGAGCCTGCAGGTGCTGGTCTCGGAGCTGATCCCTTGGGCTGTT CAGAACGGACGCAGAGCCCCGTGCCTCCTCCACCTGTACTACGAGCGCCGTTGGGAGCAG CCCCTGCGGGCCCTGCGGCAGGAGCTGGGCATCACGGAGCCCCCCGTGCGCGTCGAGGAC CTGGTCTAGGCCCCAAGGCGCTGAGCCAGGAGGGCCTGGCGCGGCTCCCAGCCCCCCAGC CCCGCTCCCCGGGGGCAGAGCGCCCCTTTGCCAGGACCTTTTCTTTGAACTCAGCCCTTG GGACATCATTAATCATAATTTACCATAACCAGGAGTTCCCATCGGGGCTCAGTGGTAACA CCCAGCTAGTAACCATGACGAGGCAGGTTTGATCCCTGGCCTTGTTCAGTGGGTTACGGA TCTGGCGTTGCTTGTGAACTGCGGTTTAGGTCACAGACTCGGCTTGGATCCCGGGCGGCT CTGGCTGTGGTGTAGGCCAGCAACTACATCTCCAATTTGACCCCTAGCCTGGGAACCACC ATGTGCCACCGGTGCAACCCTAAACAGACCAAGAAAAGAAAGAAATAAAATTGAATTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGCCTTGCCCTTCCCATCCTCCCGCGGACGTCCGACTGTACCCGCTGCCATGGCGACG CTGCTGCGCGGGGCCCTGCGCCCCCTCCGCGCCTTCCAAGGCCGCGGGCAGCCGGCTGCA GATGTGCCCCTTCGTGCCACGAGCCATGGCACCGGCCTCCTCTACCCCGAACACATCCCC ACTTCCCTGCTGCAGAAGGCGCTGTTGGCCGCGGGCTCTGCCGTAATGGCCCTCTACGAC CCTTATCGCCACGACATGGTTGCAGTTCTAGGAGAGACCACAGGACGCCGAACCCTGAAG TTCCTCAGGGACCAGATGAAGAGGGATCCAGAGGGTGCCCAGATCCTGCAGGAGCGTCCC CGGATCTCGATGTCCACCCTTGACCTGGAGAAGCTCCGAAGCCTGCCTGAGGGCTCCTTT GGCTGCGAGTATCTCCGTTTCCTGGATGTGAATAGGGTCTCCCCAGACACCCGAGCACCG ACGCGATTCGTGGATGACGAGGAGCTGGCGTACGTGATCCAGCGGTACCGGGAAGTGCAC GACATGGTCCACACTCTGCTGGGGATGCCCACCAACATCCCGGGGGAGATCGTGGTGAAG TGGTTTGAGGCTGTCCAGACCGGCCTGCCCATGTGCGTCCTGAGTGCGCTCTTTGGCCCC ATCCGACTCAGCGCCCAGAGCCTGCAGGTGCTGGTCTCGGAGCTGATCCCTTGGGCTGTT CAGAACGGACGCAGAGCCCCGTGCCTCCTCCACCTGTACTACGAGCGCCGTTGGGAGCAG CCCCTGCGGGCCCTGCGGCAGGAGCTGGGCATCACGGAGCCCCCCGTGCGCGTCGAGGAC CTGGTCTAGGCCCCAAGGCGCTGAGCCAGGAGGGCCTGGCGCGGCTCCCAGCCCCCCAGC CCCGCTCCCCGGGGGCAGAGCGCCCCTTTGCCAGGACCTTTTCTTTGAACTCAGCCCTTG GGACATCATTAATCATAATTTACCATAACCAGGAGTTCCCATCGGGGCTCAGTGGTAACA CCCAGCTAGTAACCATGACGAGGCAGGTTTGATCCCTGGCCTTGTTCAGTGGGTTACGGA TCTGGCGTTGCTTGTGAACTGCGGTTTAGGTCACAGACTCGGCTTGGATCCCGGGCGGCT CTGGCTGTGGTGTAGGCCAGCAACTACATCTCCAATTTGACCCCTAGCCTGGGAACCACC ATGTGCCACCGGTGCAACCCTAAACAGACCAAGAAAAGAAAGAAATAAAATTGAATTCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 253-360, - strand, RNAz p=0.79364 | |
| 268-360, - strand, RNAz p=0.694047 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 253-360, - strand, RNAz p=0.79364 | |
| 268-360, - strand, RNAz p=0.694047 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 253-360, gnl|bosTau2|chr11 (78207687-78207793) | |
| 253-360, gnl|canFam2|chr9 (58536114-58535984) | |
| 253-360, gnl|danRer3|chr5 (55519631-55519744) | |
| 253-360, gnl|dasNov1|scaffold_71893 (1133-1003) | |
| 253-360, gnl|echTel1|scaffold_278444 (47201-47071) | |
| 253-360, gnl|fr1|chrUn (146759103-146758992) | |
| 253-360, gnl|galGal2|chr17 (5757870-5757982) | |
| 253-360, gnl|hg17|chr9 (128166970-128167100) | |
| 253-360, gnl|Hg17|chr9 (128166975-128167081) | |
| 253-360, gnl|loxAfr1|scaffold_6293 (29335-29465) | |
| 253-360, gnl|mm7|chr2 (29797208-29797336) | |
| 253-360, gnl|Mm7|chr2 (29797213-29797319) | |
| 253-360, gnl|monDom2|scaffold_51 (2847386-2847514) | |
| 253-360, gnl|oryCun1|scaffold_122842 (310-440) | |
| 253-360, gnl|panTro1|chr11 (113014858-113014988) | |
| 253-360, gnl|rheMac2|chr1 (111958331-111958428) | |
| 253-360, gnl|rn3|chr3 (8777059-8777193) | |
| 253-360, gnl|tetNig1|chr4 (2601071-2600960) | |
| 253-360, gnl|xenTro1|scaffold_302 (1211538-1211668) | |
| 436-588, gnl|bosTau2|chr11 (78217638-78217790) | |
| 436-588, gnl|canFam2|chr9 (58529277-58529175) | |
| 436-588, gnl|danRer3|chr5 (55521779-55521880) | |
| 436-588, gnl|dasNov1|scaffold_129751 (3038-3139) | |
| 436-588, gnl|echTel1|scaffold_322938 (8261-8159) | |
| 436-588, gnl|fr1|chrUn (146758694-146758592) | |
| 436-588, gnl|galGal2|chr17 (5759568-5759670) | |
| 436-588, gnl|hg17|chr9 (128174020-128174122) | |
| 436-588, gnl|mm7|chr2 (29802726-29802828) | |
| 436-588, gnl|monDom2|scaffold_51 (2852322-2852424) | |
| 436-588, gnl|oryCun1|scaffold_122842 (8183-8269) | |
| 436-588, gnl|panTro1|chr11 (113032937-113033039) | |
| 436-588, gnl|rheMac2|chr15 (10542463-10542361) | |
| 436-588, gnl|rn3|chr3 (8782408-8782510) | |
| 436-588, gnl|tetNig1|chr4 (2600642-2600540) | |
| 436-588, gnl|xenTro1|scaffold_302 (1212881-1212983) | |
| 678-985, gnl|bosTau2|chr11 (78219039-78219332) | |
| 678-985, gnl|Hg17|chr9 (128175307-128175610) | |
| 678-985, gnl|Mm7|chr2 (29803719-29804040) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 253-360, gnl|bosTau2|chr11 (78207687-78207793) | |
| 253-360, gnl|canFam2|chr9 (58536114-58535984) | |
| 253-360, gnl|danRer3|chr5 (55519631-55519744) | |
| 253-360, gnl|dasNov1|scaffold_71893 (1133-1003) | |
| 253-360, gnl|echTel1|scaffold_278444 (47201-47071) | |
| 253-360, gnl|fr1|chrUn (146759103-146758992) | |
| 253-360, gnl|galGal2|chr17 (5757870-5757982) | |
| 253-360, gnl|hg17|chr9 (128166970-128167100) | |
| 253-360, gnl|Hg17|chr9 (128166975-128167081) | |
| 253-360, gnl|loxAfr1|scaffold_6293 (29335-29465) | |
| 253-360, gnl|mm7|chr2 (29797208-29797336) | |
| 253-360, gnl|Mm7|chr2 (29797213-29797319) | |
| 253-360, gnl|monDom2|scaffold_51 (2847386-2847514) | |
| 253-360, gnl|oryCun1|scaffold_122842 (310-440) | |
| 253-360, gnl|panTro1|chr11 (113014858-113014988) | |
| 253-360, gnl|rheMac2|chr1 (111958331-111958428) | |
| 253-360, gnl|rn3|chr3 (8777059-8777193) | |
| 253-360, gnl|tetNig1|chr4 (2601071-2600960) | |
| 253-360, gnl|xenTro1|scaffold_302 (1211538-1211668) | |
| 436-588, gnl|bosTau2|chr11 (78217638-78217790) | |
| 436-588, gnl|canFam2|chr9 (58529277-58529175) | |
| 436-588, gnl|danRer3|chr5 (55521779-55521880) | |
| 436-588, gnl|dasNov1|scaffold_129751 (3038-3139) | |
| 436-588, gnl|echTel1|scaffold_322938 (8261-8159) | |
| 436-588, gnl|fr1|chrUn (146758694-146758592) | |
| 436-588, gnl|galGal2|chr17 (5759568-5759670) | |
| 436-588, gnl|hg17|chr9 (128174020-128174122) | |
| 436-588, gnl|mm7|chr2 (29802726-29802828) | |
| 436-588, gnl|monDom2|scaffold_51 (2852322-2852424) | |
| 436-588, gnl|oryCun1|scaffold_122842 (8183-8269) | |
| 436-588, gnl|panTro1|chr11 (113032937-113033039) | |
| 436-588, gnl|rheMac2|chr15 (10542463-10542361) | |
| 436-588, gnl|rn3|chr3 (8782408-8782510) | |
| 436-588, gnl|tetNig1|chr4 (2600642-2600540) | |
| 436-588, gnl|xenTro1|scaffold_302 (1212881-1212983) | |
| 678-985, gnl|bosTau2|chr11 (78219039-78219332) | |
| 678-985, gnl|Hg17|chr9 (128175307-128175610) | |
| 678-985, gnl|Mm7|chr2 (29803719-29804040) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| hlv (0.417769) | |
| fce (0.271592) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.417769) | |
| fce (0.271592) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |