Ss1.1-Lng1-LNG010029B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTCAGCCCGCGTCTGCCGCCAGCCGGGCTCGTCACCGCCGCCGCCCGACCCCTGTGC TCGGGTGCGCGCTCTCGCTTGCGTGCTTCCTGCCGCCGCCGCCGGGACCATGGCGACCTG CTTTCGGTTGCGGGGCTGCCTGACCCTGCACCTCCCCACTGCACCTGCGATCCGCGGCCT CCGCCCCCGCGCCGACTGCCTGGTGGCCACCACGCGGCCCTCGCCAGGCCCGGCCCCGAT CCGCCGCTATGCCCGGGGCACAGAGGGCCTTTCCTCGGCACTGCTGCGCACCGACGGCTT CGTGGGTGGCCGCTGGCTCTCGGCCGCCTCCACCTTCCCGGTGTACGACCCGGCCAGCGG CGCCGAGCTGGGCTTGGTGGCCGACTGCGGGGTGTCCGAGGCCCGCGCCGCGGTGCGCGC CGCCTATGAGGCTTTCTGCACCTGGAAGGGGGTCTCGGCCAAGGAGAGGAGTTCTTTCCT TCGGAAATGGTATGATTTAATGATACAAAATAAGGATGACCTTGCCAAGATAATTACAGC TGAAAGTGGAAAACCACTGAAGGAGGCACAGGGAGAAATTCTCTATTCTGCCAACTTTCT GGAGTGGTTTTCAGAGGAAGCCCGCCGCGTTTATGGAGATGTTATCTACACCCCAGCCAA AGAAAGGCGGGCTCTGGTCCTCAAGCAGCCCGTTGGTGTAGCTGCAGTCATCACCCCATG GAATTTCCCCAGTGCCATGATCACACGGAAGGTGGGGGCCGCCCTGGCAGCGGGCTGCAC GGTGGTGGTGAAACCTGCGGAGGACACGCCCTTCTCCGCCCTGGCCTTGGCCCAGCTTGC AAACCAGGCTGGAATTCCTCCGGGTGTGTACAATGTTATTCCCTGCTCTCAAAAGAAGGC CATGGAAGTAGGGGAAGCACTGTGCACGGATCCTCTTGTGTCTAAAATCTCCTTTACAGG CTCCACAGCCACCGGAAAGGTCCTGTTGCACCACGCAGCAAACTCTGTGAAAAGGGTGTC CATGGAGCTGGGCGGCCATGCCCCCTTCATCGTGTTTGACAGCGCCAATGTGGACCAGGC TGTGGCAGGGGCCATGGTCTCCAAATTTAGGAACTCTGGACAGACTTGTGTTTGCTCTAA CCGTTTCTTGGTGCAAAGAGGTATCCATGATTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTCAGCCCGCGTCTGCCGCCAGCCGGGCTCGTCACCGCCGCCGCCCGACCCCTGTGC TCGGGTGCGCGCTCTCGCTTGCGTGCTTCCTGCCGCCGCCGCCGGGACCATGGCGACCTG CTTTCGGTTGCGGGGCTGCCTGACCCTGCACCTCCCCACTGCACCTGCGATCCGCGGCCT CCGCCCCCGCGCCGACTGCCTGGTGGCCACCACGCGGCCCTCGCCAGGCCCGGCCCCGAT CCGCCGCTATGCCCGGGGCACAGAGGGCCTTTCCTCGGCACTGCTGCGCACCGACGGCTT CGTGGGTGGCCGCTGGCTCTCGGCCGCCTCCACCTTCCCGGTGTACGACCCGGCCAGCGG CGCCGAGCTGGGCTTGGTGGCCGACTGCGGGGTGTCCGAGGCCCGCGCCGCGGTGCGCGC CGCCTATGAGGCTTTCTGCACCTGGAAGGGGGTCTCGGCCAAGGAGAGGAGTTCTTTCCT TCGGAAATGGTATGATTTAATGATACAAAATAAGGATGACCTTGCCAAGATAATTACAGC TGAAAGTGGAAAACCACTGAAGGAGGCACAGGGAGAAATTCTCTATTCTGCCAACTTTCT GGAGTGGTTTTCAGAGGAAGCCCGCCGCGTTTATGGAGATGTTATCTACACCCCAGCCAA AGAAAGGCGGGCTCTGGTCCTCAAGCAGCCCGTTGGTGTAGCTGCAGTCATCACCCCATG GAATTTCCCCAGTGCCATGATCACACGGAAGGTGGGGGCCGCCCTGGCAGCGGGCTGCAC GGTGGTGGTGAAACCTGCGGAGGACACGCCCTTCTCCGCCCTGGCCTTGGCCCAGCTTGC AAACCAGGCTGGAATTCCTCCGGGTGTGTACAATGTTATTCCCTGCTCTCAAAAGAAGGC CATGGAAGTAGGGGAAGCACTGTGCACGGATCCTCTTGTGTCTAAAATCTCCTTTACAGG CTCCACAGCCACCGGAAAGGTCCTGTTGCACCACGCAGCAAACTCTGTGAAAAGGGTGTC CATGGAGCTGGGCGGCCATGCCCCCTTCATCGTGTTTGACAGCGCCAATGTGGACCAGGC TGTGGCAGGGGCCATGGTCTCCAAATTTAGGAACTCTGGACAGACTTGTGTTTGCTCTAA CCGTTTCTTGGTGCAAAGAGGTATCCATGATTCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 600-717, - strand, RNAz p=0.955756 | |
| 719-813, - strand, RNAz p=0.56906 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 600-717, - strand, RNAz p=0.955756 | |
| 719-813, - strand, RNAz p=0.56906 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 10-468, gnl|bosTau2|chr23 (26757352-26756929) | |
| 10-468, gnl|Hg17|chr6 (24603058-24603562) | |
| 10-468, gnl|Mm7|chr13 (24303487-24303048) | |
| 548-717, gnl|bosTau2|chr23 (26747976-26747807) | |
| 548-717, gnl|canFam2|chr35 (25578195-25578402) | |
| 548-717, gnl|danRer3|chrNA (108064114-108064295) | |
| 548-717, gnl|dasNov1|scaffold_127308 (2453-2250) | |
| 548-717, gnl|echTel1|scaffold_273261 (12292-12089) | |
| 548-717, gnl|fr1|chrUn (260041764-260041565) | |
| 548-717, gnl|galGal2|chr2 (57637052-57636859) | |
| 548-717, gnl|hg17|chr6 (24611449-24611652) | |
| 548-717, gnl|Hg17|chr6 (24611470-24611639) | |
| 548-717, gnl|mm7|chr13 (24291973-24291770) | |
| 548-717, gnl|Mm7|chr13 (24291950-24291781) | |
| 548-717, gnl|monDom2|scaffold_3 (114950286-114950490) | |
| 548-717, gnl|oryCun1|scaffold_135648 (7439-7232) | |
| 548-717, gnl|panTro1|chr5 (25058391-25058594) | |
| 548-717, gnl|rheMac2|chr4 (24510722-24510925) | |
| 548-717, gnl|rn3|chr17 (47205771-47205974) | |
| 548-717, gnl|tetNig1|chrUn_random (47031235-47031051) | |
| 548-717, gnl|xenTro1|scaffold_500 (88991-88794) | |
| 719-831, gnl|bosTau2|chr23 (26746126-26746014) | |
| 719-831, gnl|canFam2|chr35 (25579813-25579964) | |
| 719-831, gnl|danRer3|chrNA (108064640-108064765) | |
| 719-831, gnl|echTel1|scaffold_273261 (10103-9958) | |
| 719-831, gnl|fr1|chrUn (260041504-260041371) | |
| 719-831, gnl|galGal2|chr2 (57636592-57636451) | |
| 719-831, gnl|hg17|chr6 (24613054-24613199) | |
| 719-831, gnl|Hg17|chr6 (24613076-24613188) | |
| 719-831, gnl|loxAfr1|scaffold_54704 (7569-7425) | |
| 719-831, gnl|mm7|chr13 (24289903-24289764) | |
| 719-831, gnl|Mm7|chr13 (24289885-24289773) | |
| 719-831, gnl|oryCun1|scaffold_135648 (5870-5726) | |
| 719-831, gnl|panTro1|chr5 (25059992-25060137) | |
| 719-831, gnl|rheMac2|chr4 (24512310-24512455) | |
| 719-831, gnl|rn3|chr17 (47207349-47207487) | |
| 719-831, gnl|tetNig1|chrUn_random (47030929-47030802) | |
| 719-831, gnl|xenTro1|scaffold_500 (88293-88149) | |
| 978-1123, gnl|bosTau2|chr23 (26740794-26740649) | |
| 978-1123, gnl|canFam2|chr35 (25586779-25586953) | |
| 978-1123, gnl|danRer3|chrNA (108066616-108066772) | |
| 978-1123, gnl|dasNov1|scaffold_42477 (6307-6470) | |
| 978-1123, gnl|echTel1|scaffold_310448 (41634-41808) | |
| 978-1123, gnl|fr1|chrUn (260041027-260040868) | |
| 978-1123, gnl|galGal2|chr2 (57635006-57634847) | |
| 978-1123, gnl|hg17|chr6 (24628593-24628767) | |
| 978-1123, gnl|Hg17|chr6 (24628606-24628751) | |
| 978-1123, gnl|loxAfr1|scaffold_54668 (6277-6450) | |
| 978-1123, gnl|mm7|chr13 (24284468-24284289) | |
| 978-1123, gnl|Mm7|chr13 (24284448-24284303) | |
| 978-1123, gnl|monDom2|scaffold_3 (114958096-114958272) | |
| 978-1123, gnl|panTro1|chr5 (25075731-25075905) | |
| 978-1123, gnl|rheMac2|chr4 (24522294-24522468) | |
| 978-1123, gnl|rn3|chr17 (47212655-47212841) | |
| 978-1123, gnl|tetNig1|chrUn_random (47030497-47030323) | |
| 978-1123, gnl|xenTro1|scaffold_500 (87347-87182) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-468, gnl|bosTau2|chr23 (26757352-26756929) | |
| 10-468, gnl|Hg17|chr6 (24603058-24603562) | |
| 10-468, gnl|Mm7|chr13 (24303487-24303048) | |
| 548-717, gnl|bosTau2|chr23 (26747976-26747807) | |
| 548-717, gnl|canFam2|chr35 (25578195-25578402) | |
| 548-717, gnl|danRer3|chrNA (108064114-108064295) | |
| 548-717, gnl|dasNov1|scaffold_127308 (2453-2250) | |
| 548-717, gnl|echTel1|scaffold_273261 (12292-12089) | |
| 548-717, gnl|fr1|chrUn (260041764-260041565) | |
| 548-717, gnl|galGal2|chr2 (57637052-57636859) | |
| 548-717, gnl|hg17|chr6 (24611449-24611652) | |
| 548-717, gnl|Hg17|chr6 (24611470-24611639) | |
| 548-717, gnl|mm7|chr13 (24291973-24291770) | |
| 548-717, gnl|Mm7|chr13 (24291950-24291781) | |
| 548-717, gnl|monDom2|scaffold_3 (114950286-114950490) | |
| 548-717, gnl|oryCun1|scaffold_135648 (7439-7232) | |
| 548-717, gnl|panTro1|chr5 (25058391-25058594) | |
| 548-717, gnl|rheMac2|chr4 (24510722-24510925) | |
| 548-717, gnl|rn3|chr17 (47205771-47205974) | |
| 548-717, gnl|tetNig1|chrUn_random (47031235-47031051) | |
| 548-717, gnl|xenTro1|scaffold_500 (88991-88794) | |
| 719-831, gnl|bosTau2|chr23 (26746126-26746014) | |
| 719-831, gnl|canFam2|chr35 (25579813-25579964) | |
| 719-831, gnl|danRer3|chrNA (108064640-108064765) | |
| 719-831, gnl|echTel1|scaffold_273261 (10103-9958) | |
| 719-831, gnl|fr1|chrUn (260041504-260041371) | |
| 719-831, gnl|galGal2|chr2 (57636592-57636451) | |
| 719-831, gnl|hg17|chr6 (24613054-24613199) | |
| 719-831, gnl|Hg17|chr6 (24613076-24613188) | |
| 719-831, gnl|loxAfr1|scaffold_54704 (7569-7425) | |
| 719-831, gnl|mm7|chr13 (24289903-24289764) | |
| 719-831, gnl|Mm7|chr13 (24289885-24289773) | |
| 719-831, gnl|oryCun1|scaffold_135648 (5870-5726) | |
| 719-831, gnl|panTro1|chr5 (25059992-25060137) | |
| 719-831, gnl|rheMac2|chr4 (24512310-24512455) | |
| 719-831, gnl|rn3|chr17 (47207349-47207487) | |
| 719-831, gnl|tetNig1|chrUn_random (47030929-47030802) | |
| 719-831, gnl|xenTro1|scaffold_500 (88293-88149) | |
| 978-1123, gnl|bosTau2|chr23 (26740794-26740649) | |
| 978-1123, gnl|canFam2|chr35 (25586779-25586953) | |
| 978-1123, gnl|danRer3|chrNA (108066616-108066772) | |
| 978-1123, gnl|dasNov1|scaffold_42477 (6307-6470) | |
| 978-1123, gnl|echTel1|scaffold_310448 (41634-41808) | |
| 978-1123, gnl|fr1|chrUn (260041027-260040868) | |
| 978-1123, gnl|galGal2|chr2 (57635006-57634847) | |
| 978-1123, gnl|hg17|chr6 (24628593-24628767) | |
| 978-1123, gnl|Hg17|chr6 (24628606-24628751) | |
| 978-1123, gnl|loxAfr1|scaffold_54668 (6277-6450) | |
| 978-1123, gnl|mm7|chr13 (24284468-24284289) | |
| 978-1123, gnl|Mm7|chr13 (24284448-24284303) | |
| 978-1123, gnl|monDom2|scaffold_3 (114958096-114958272) | |
| 978-1123, gnl|panTro1|chr5 (25075731-25075905) | |
| 978-1123, gnl|rheMac2|chr4 (24522294-24522468) | |
| 978-1123, gnl|rn3|chr17 (47212655-47212841) | |
| 978-1123, gnl|tetNig1|chrUn_random (47030497-47030323) | |
| 978-1123, gnl|xenTro1|scaffold_500 (87347-87182) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| pla (0.133672) | |
| pgl (0.118483) |