Non-Coding RNA Search

Ss1.1-Lng1-LNG010029E02.5

Sequence:


               
               ATGTCACAGGCCCCATGTGAGCGGATTGCAACACATGCAGCTGCCTGGAGAGAGGGAGCC
GGTGTCCTACGTCAGAGCCGCCGCCGCGGAGCCGCCGCCGGGGAGGAGCAGCAGCTGCCG
CCCAGGACTGGGCCCTTAGGGAGGAGGAGGCGAGAAGATGGCGGACGACCCCAGTGCTGC
CGACAGGAACGTGGAGATCTGGAAGATCAAAAAGCTCATTAAGAGCTTGGAGGCGGCCCG
CGGCAATGGCACAAGCATGATATCACTGATCATTCCTCCCAAAGACCAGATTTCACGAGT
GGCAAAAATGTTAGCAGATGAGTTTGGAACTGCATCTAACATTAAGTCACGAGTAAACCG
CCTTTCAGTCCTGGGAGCCATTACATCTGTACAACAAAGACTCAAACTTTATAACAAAGT
ACCTCCAAATGGCCTGGTTGTTTACTGTGGTACAATTGTAACAGAAGAAGGAAAGGAAAA
GAAAGTCAACATTGACTTTGAACCTTTCAAACCAATTAATACATCATTGTATTTGTGTGA
CAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCAGATGATAGCAAGTTTGGCTT
CATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAATACAAGAGAAGT
CCTGCACAAATTCACTGTGGATCTCCCAAAGAAACATGGTAGAGGAGGTCAGTCAGCCTT
GCGCTTTGCCCGCTTAAGAATGGAAAAGCGACATAACTATGTTCGGAAAGTAGCTGAGAC
TGCTGTGCAGCTGTTTATTTCTGGGGACAAAGTGAATGTGGCTGGTCTCGTTTTAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTCACAGGCCCCATGTGAGCGGATTGCAACACATGCAGCTGCCTGGAGAGAGGGAGCC
GGTGTCCTACGTCAGAGCCGCCGCCGCGGAGCCGCCGCCGGGGAGGAGCAGCAGCTGCCG
CCCAGGACTGGGCCCTTAGGGAGGAGGAGGCGAGAAGATGGCGGACGACCCCAGTGCTGC
CGACAGGAACGTGGAGATCTGGAAGATCAAAAAGCTCATTAAGAGCTTGGAGGCGGCCCG
CGGCAATGGCACAAGCATGATATCACTGATCATTCCTCCCAAAGACCAGATTTCACGAGT
GGCAAAAATGTTAGCAGATGAGTTTGGAACTGCATCTAACATTAAGTCACGAGTAAACCG
CCTTTCAGTCCTGGGAGCCATTACATCTGTACAACAAAGACTCAAACTTTATAACAAAGT
ACCTCCAAATGGCCTGGTTGTTTACTGTGGTACAATTGTAACAGAAGAAGGAAAGGAAAA
GAAAGTCAACATTGACTTTGAACCTTTCAAACCAATTAATACATCATTGTATTTGTGTGA
CAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCAGATGATAGCAAGTTTGGCTT
CATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAATACAAGAGAAGT
CCTGCACAAATTCACTGTGGATCTCCCAAAGAAACATGGTAGAGGAGGTCAGTCAGCCTT
GCGCTTTGCCCGCTTAAGAATGGAAAAGCGACATAACTATGTTCGGAAAGTAGCTGAGAC
TGCTGTGCAGCTGTTTATTTCTGGGGACAAAGTGAATGTGGCTGGTCTCGTTTTAGCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61811701|ref|XP_614442.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811701|ref|XP_614442.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               89-790, gnl|bosTau2|chr2 (50925555-50924856)
               

               
               89-790, gnl|Hg17|chr7 (150636569-150637533)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-790, gnl|bosTau2|chr2 (50925555-50924856)
               

               
               89-790, gnl|Hg17|chr7 (150636569-150637533)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fli (0.202881)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	89-790, gnl\|bosTau2\|chr2 (50925555-50924856)
	89-790, gnl\|Hg17\|chr7 (150636569-150637533)

	fli (0.202881)
	lun (0.150489)
	ste (0.135208)
	pla (0.133672)
	eep (0.122564)
	ecc (0.115035)
	cty (0.10408)