Ss1.1-Lng1-LNG010029G04.5.5
|
TATCTAAGTTTACTCCTAAGAATAGTTACCTTTTCTCTTACCCACTTCATTTTTGGCTGC
CCTACAGCAAATGAAACTCCTGGGCCAGAGATCAGATCCAAGCCGCAGTCATGACCTAAG
CCTCAGCCGTGGCAATGCGGGATCCTTAACCCACTGGGCTGGGCTGGGGATAGAACCTGC
GTCCCAGTGTTCCCAAGATGCCTCCGATCCTGTTGTGCCACAGTGGGAGCTCCAGGGTGG
TTATCTTTTTTTGTAGTTTTTCCCCTCTCCTTTGAATCTGGTTCTTACTTCAGTTTTTCT
GCTCCAAGAACTAAATTTGAAAGTACAAAGTTTCTAGCTCTCAAAACATTATTTTTCTAG
CTATTTAATGGCAGCTGGCTTTGCAAGTCCTAGTGAAAACAATGGTGTGCTTTGGTGGTT
GACTGTATAATCTCAGTAATTCCATATTTGTGCTTAGCTGATTAACTTAAAAGTTTTCAC
AAATTTTAAATTTGAAAATTTGTATCGACTCTACTCAGTTATGTAATAAGGGGCCACTGG
GGCTGTTTTTTTAAGCCATATTTTAAAGTTATAAAAAGATGGAACATCTGTCTGATGATG
TTGACATAAAGGAACAGACGATTTTCTTTCATATTTGAAAACAGTGTAAGTCAGGATTTT
CCTTTTCTTCCTGTGCCATAGGCTGCCCATCTCTTCTCCGCTAGATCAGCTTGTGAAGAG
CGAGCCTCTGGCTGCTTCATGCATAGTTTGGCCAACCAGAGTATTGTATGGTCAAGAGTT
CTGCCTCACTCAGACCCTTGTTGTTTGTCTTCTGTGCTGCAGTGCTTAAAGTTGTATCCC
TAAAAGGCAATTTCATCTTCCAGACTAGTGTATTCCCTCCGTATAGGAGTTCCCGTCATG
GCTCAGCAGAAAAGAATCTGACTGTTACCCATGCGGATGCAGGTTCAATCCCTGGCCTTA
CTCAGTGGGTTAAGGATCCGGCGTTGCTGTGGTTGTGGTGTAGGCTGGCAGCTGCAGCTC
AGATTCAACCCTTAGCCTGGGAACTTCCATATGCCGCAGGTGTGGCCCTAAAAAAATAAA
AAATAAAAGAATTAATAACATAGACTATTGCAGAAGTCAAAGTCACTATAAATGTAGTGC
TGTGTGCTTGTGGATTGCCTTTGTTTGTACCACTTTGAAATTTGTTTAAGTGAATAGAAA
ATGATTCTCTGTTGATGTTTTCAAGCCCTTGAAAAATTATTTTAAATTTTTTTGGCAGGT
TTGTGAGAGAATAAGATTAAGAACTTGTTTAAACAACAACAACAACAACAAAAAGACAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TATCTAAGTTTACTCCTAAGAATAGTTACCTTTTCTCTTACCCACTTCATTTTTGGCTGC
CCTACAGCAAATGAAACTCCTGGGCCAGAGATCAGATCCAAGCCGCAGTCATGACCTAAG
CCTCAGCCGTGGCAATGCGGGATCCTTAACCCACTGGGCTGGGCTGGGGATAGAACCTGC
GTCCCAGTGTTCCCAAGATGCCTCCGATCCTGTTGTGCCACAGTGGGAGCTCCAGGGTGG
TTATCTTTTTTTGTAGTTTTTCCCCTCTCCTTTGAATCTGGTTCTTACTTCAGTTTTTCT
GCTCCAAGAACTAAATTTGAAAGTACAAAGTTTCTAGCTCTCAAAACATTATTTTTCTAG
CTATTTAATGGCAGCTGGCTTTGCAAGTCCTAGTGAAAACAATGGTGTGCTTTGGTGGTT
GACTGTATAATCTCAGTAATTCCATATTTGTGCTTAGCTGATTAACTTAAAAGTTTTCAC
AAATTTTAAATTTGAAAATTTGTATCGACTCTACTCAGTTATGTAATAAGGGGCCACTGG
GGCTGTTTTTTTAAGCCATATTTTAAAGTTATAAAAAGATGGAACATCTGTCTGATGATG
TTGACATAAAGGAACAGACGATTTTCTTTCATATTTGAAAACAGTGTAAGTCAGGATTTT
CCTTTTCTTCCTGTGCCATAGGCTGCCCATCTCTTCTCCGCTAGATCAGCTTGTGAAGAG
CGAGCCTCTGGCTGCTTCATGCATAGTTTGGCCAACCAGAGTATTGTATGGTCAAGAGTT
CTGCCTCACTCAGACCCTTGTTGTTTGTCTTCTGTGCTGCAGTGCTTAAAGTTGTATCCC
TAAAAGGCAATTTCATCTTCCAGACTAGTGTATTCCCTCCGTATAGGAGTTCCCGTCATG
GCTCAGCAGAAAAGAATCTGACTGTTACCCATGCGGATGCAGGTTCAATCCCTGGCCTTA
CTCAGTGGGTTAAGGATCCGGCGTTGCTGTGGTTGTGGTGTAGGCTGGCAGCTGCAGCTC
AGATTCAACCCTTAGCCTGGGAACTTCCATATGCCGCAGGTGTGGCCCTAAAAAAATAAA
AAATAAAAGAATTAATAACATAGACTATTGCAGAAGTCAAAGTCACTATAAATGTAGTGC
TGTGTGCTTGTGGATTGCCTTTGTTTGTACCACTTTGAAATTTGTTTAAGTGAATAGAAA
ATGATTCTCTGTTGATGTTTTCAAGCCCTTGAAAAATTATTTTAAATTTTTTTGGCAGGT
TTGTGAGAGAATAAGATTAAGAACTTGTTTAAACAACAACAACAACAACAAAAAGACAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
242-884, gnl|bosTau2|chr24 (24741329-24740703) |
|
242-884, gnl|Hg17|chr18 (17700048-17700699) |
|
242-884, gnl|Mm7|chr18 (11020088-11020886) |
| |
|
1083-1276, gnl|bosTau2|chr24 (24740704-24740508) |
|
1083-1276, gnl|canFam2|chr7 (69218916-69218695) |
|
1083-1276, gnl|dasNov1|scaffold_124620 (3681-3457) |
|
1083-1276, gnl|echTel1|scaffold_312695 (5445-5221) |
|
1083-1276, gnl|hg17|chr18 (17700613-17700830) |
|
1083-1276, gnl|Hg17|chr18 (17700698-17700893) |
|
1083-1276, gnl|loxAfr1|scaffold_6708 (45652-45421) |
|
1083-1276, gnl|mm7|chr18 (11020786-11021015) |
|
1083-1276, gnl|Mm7|chr18 (11020885-11021072) |
|
1083-1276, gnl|monDom2|scaffold_21 (36634465-36634690) |
|
1083-1276, gnl|oryCun1|scaffold_214026 (4376-4151) |
|
1083-1276, gnl|panTro1|chr17 (13602990-13603207) |
|
1083-1276, gnl|rheMac2|chr18 (14875425-14875640) |
|
1083-1276, gnl|rn3|chr18 (2226762-2226993) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
242-884, gnl|bosTau2|chr24 (24741329-24740703) |
|
242-884, gnl|Hg17|chr18 (17700048-17700699) |
|
242-884, gnl|Mm7|chr18 (11020088-11020886) |
| |
|
1083-1276, gnl|bosTau2|chr24 (24740704-24740508) |
|
1083-1276, gnl|canFam2|chr7 (69218916-69218695) |
|
1083-1276, gnl|dasNov1|scaffold_124620 (3681-3457) |
|
1083-1276, gnl|echTel1|scaffold_312695 (5445-5221) |
|
1083-1276, gnl|hg17|chr18 (17700613-17700830) |
|
1083-1276, gnl|Hg17|chr18 (17700698-17700893) |
|
1083-1276, gnl|loxAfr1|scaffold_6708 (45652-45421) |
|
1083-1276, gnl|mm7|chr18 (11020786-11021015) |
|
1083-1276, gnl|Mm7|chr18 (11020885-11021072) |
|
1083-1276, gnl|monDom2|scaffold_21 (36634465-36634690) |
|
1083-1276, gnl|oryCun1|scaffold_214026 (4376-4151) |
|
1083-1276, gnl|panTro1|chr17 (13602990-13603207) |
|
1083-1276, gnl|rheMac2|chr18 (14875425-14875640) |
|
1083-1276, gnl|rn3|chr18 (2226762-2226993) |
|
jca (0.34188) |
|
ova (0.258264) |
|
tra (0.246184) |
|
cty (0.20816) |
|
sto (0.179824) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
ste (0.135208) |
|
ute (0.132784) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eep (0.122564) |
|
spc (0.113366) |
|
jca (0.34188) |
|
ova (0.258264) |
|
tra (0.246184) |
|
cty (0.20816) |
|
sto (0.179824) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
ste (0.135208) |
|
ute (0.132784) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eep (0.122564) |
|
spc (0.113366) |
