Non-Coding RNA Search

Ss1.1-Lng1-LNG010031A12.5

Sequence:


               
               TCAGGACCGCCCCCTCCCCGCAGTTTCAGTGGACAGCCCGGCGCGGTACAGGACTTGCCC
GGCTCTAGAAGACGCCGGCTCGCCCGGGTATCAGTATTCAGGGCCCCCTCCCCCAGCCTA
TCACTACAGAAGCCGGGGTGGACTCTCCATTCAGGAATCAGTATTGCTGTGAGAATTTTT
CCTGGCAACAGACAAGAGAATAGAAACCATACGAAACCTACATTGCTATGTTTGTAATTG
CCAAAGCAGTATTTTATACCGTTGTAAACCACTCGCACAGCTCTCACGTCTGTCAGTACT
AAGAGTGTATGGAAGTGTCTTCATCCCCACCGAATGCTGCTTAAGGTGACCTTTTAATTT
GCATCATCACTGAACCTGTTAAAGAGACTTTAAGGTGGAAACATAGCAATAGCATTTAGG
GATGCACGCACAGTTTCATTTAGATCATTCTTCCGAACCTGAATAGTTTTACTCTGTTAG
CCCATTCTCTTTTGAGTAATGTTACAAAGCACTGAAAGACTGTAGAATAGATATTTTTAA
GGCCACATGTAGTGTATGTGTCTTTTAATAGCTGTTATAGGCATCTATGCATACACGCTT
GAACACAGAACTCAAGAAATGTCAAAAAAGAAAACTACTTTTAATCCAGATCCATGATAA
TTTATTCTTCTTTTTCCTAACTTGTCTTCTAGTCAAGTTTTTGTTTTTGTTTCTTTTTTC
TTTTTAACCCAGGTCCTAAACTGATTTGAGGGTTTGCCCTGACTTGATTAAGCATGTCAC
AGAATGCTCAGCTTTTTCATTCAGTTGCTGGCATTTTCTTTCAGTCTGAAAACTGGAAGA
CTTTGGAGAGAAAGGTTAGCCACTTAATGGTGCTTACAAACCAGGGCAGTTAGAGCGAGT
TTATGGCCAGAGGTGCAGTGCTCGGTGTATGCACGTTCACCGCCCTGTTTGTGCATCTGT
GCCCTTTGTTCTGGTCTGACTCTCGCCAAGCTCAGAGCAGAGTGTTCCTTGCCAGATGCC
CAGGAAGTGCCGCAGTACAGCTCTCCAGCAGATGCCAGCAGGAGAAGTTGCAAGTCACTG
ATCATCAAGCTTTCACACAGGGCAGCAGAAAAAAACTCTTTTGAAATTCATTTGAAAGCA
GGATTAGCAATATGGTAACTTCTTACTTCTGCCCCTTAAATCCCCGCAGAGCCTCCCACA
AAGGGCCCAGAGTGGCATTTCCGTGATCTTTTCCTGGCCCGCGTGCTTTAAAGAATGTAG
TCACTGTGTGTTGCTGCACATGGGCCATTAAATTAGCATCATGTTAAATTGTAAAAAAAT
GATCCTAATTATTACTAGGAATTGAAGATTTTGGTCTTTTTTTTTTTCATAGTATGACTT
TCATGCTTTCAAGTCAGTTTTTTTGTTGGTTTTTTTCTTTGATTTGTTTCAGTGAAAAAA
ATTCAGGTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGACCGCCCCCTCCCCGCAGTTTCAGTGGACAGCCCGGCGCGGTACAGGACTTGCCC
GGCTCTAGAAGACGCCGGCTCGCCCGGGTATCAGTATTCAGGGCCCCCTCCCCCAGCCTA
TCACTACAGAAGCCGGGGTGGACTCTCCATTCAGGAATCAGTATTGCTGTGAGAATTTTT
CCTGGCAACAGACAAGAGAATAGAAACCATACGAAACCTACATTGCTATGTTTGTAATTG
CCAAAGCAGTATTTTATACCGTTGTAAACCACTCGCACAGCTCTCACGTCTGTCAGTACT
AAGAGTGTATGGAAGTGTCTTCATCCCCACCGAATGCTGCTTAAGGTGACCTTTTAATTT
GCATCATCACTGAACCTGTTAAAGAGACTTTAAGGTGGAAACATAGCAATAGCATTTAGG
GATGCACGCACAGTTTCATTTAGATCATTCTTCCGAACCTGAATAGTTTTACTCTGTTAG
CCCATTCTCTTTTGAGTAATGTTACAAAGCACTGAAAGACTGTAGAATAGATATTTTTAA
GGCCACATGTAGTGTATGTGTCTTTTAATAGCTGTTATAGGCATCTATGCATACACGCTT
GAACACAGAACTCAAGAAATGTCAAAAAAGAAAACTACTTTTAATCCAGATCCATGATAA
TTTATTCTTCTTTTTCCTAACTTGTCTTCTAGTCAAGTTTTTGTTTTTGTTTCTTTTTTC
TTTTTAACCCAGGTCCTAAACTGATTTGAGGGTTTGCCCTGACTTGATTAAGCATGTCAC
AGAATGCTCAGCTTTTTCATTCAGTTGCTGGCATTTTCTTTCAGTCTGAAAACTGGAAGA
CTTTGGAGAGAAAGGTTAGCCACTTAATGGTGCTTACAAACCAGGGCAGTTAGAGCGAGT
TTATGGCCAGAGGTGCAGTGCTCGGTGTATGCACGTTCACCGCCCTGTTTGTGCATCTGT
GCCCTTTGTTCTGGTCTGACTCTCGCCAAGCTCAGAGCAGAGTGTTCCTTGCCAGATGCC
CAGGAAGTGCCGCAGTACAGCTCTCCAGCAGATGCCAGCAGGAGAAGTTGCAAGTCACTG
ATCATCAAGCTTTCACACAGGGCAGCAGAAAAAAACTCTTTTGAAATTCATTTGAAAGCA
GGATTAGCAATATGGTAACTTCTTACTTCTGCCCCTTAAATCCCCGCAGAGCCTCCCACA
AAGGGCCCAGAGTGGCATTTCCGTGATCTTTTCCTGGCCCGCGTGCTTTAAAGAATGTAG
TCACTGTGTGTTGCTGCACATGGGCCATTAAATTAGCATCATGTTAAATTGTAAAAAAAT
GATCCTAATTATTACTAGGAATTGAAGATTTTGGTCTTTTTTTTTTTCATAGTATGACTT
TCATGCTTTCAAGTCAGTTTTTTTGTTGGTTTTTTTCTTTGATTTGTTTCAGTGAAAAAA
ATTCAGGTTCAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1451, gnl|bosTau2|chr13 (5536146-5537579)
               

               
               1-1451, gnl|Hg17|chr10 (11544617-11543248)
               

               
               1-1451, gnl|Mm7|chr2 (6358844-6360073)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1451, gnl|bosTau2|chr13 (5536146-5537579)
               

               
               1-1451, gnl|Hg17|chr10 (11544617-11543248)
               

               
               1-1451, gnl|Mm7|chr2 (6358844-6360073)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cki (0.330469)
               

               
               liv (0.292569)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               liv (0.292569)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-1451, gnl\|bosTau2\|chr13 (5536146-5537579)
	1-1451, gnl\|Hg17\|chr10 (11544617-11543248)
	1-1451, gnl\|Mm7\|chr2 (6358844-6360073)

	cki (0.330469)
	liv (0.292569)
	rec (0.17307)
	lun (0.150489)
	ste (0.135208)
	bla (0.124347)
	clu (0.119646)
	cbl (0.114797)
	cty (0.10408)