Ss1.1-Lng1-LNG010031B11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCACAGAGGGCCGGAGGAGGCAGACCAGCCCCCCTCGATGTCCAGTCATGAGGCGGCC CCCCCGGCTCCCCCCAGGCGCAACCCCTGCTGCTTGTGCTGGTGCTGCTGTTGCAGCTGC TCCTGGAATGAAGAGCGGCGGCGGGCATGGCGGGCCTCGCGGGAGAGCAGGCCGCAGCCC CTCCCCAGCTGCGAGGTCTGTGCCACACCGAGCCCCGAAGAGGTGCAGAGCTGGGCACAG TCTTTCGACAAGCTGATGCGCAGCCCGGCCGGCCGCGGCGCCTTCCGGGCCTTCCTGCGC ACGGAGTACAGCGAGGAGAACATGCTTTTCTGGCTGGCCTGCGAGGAGCTCAAGGCCGAG GCCGACCGGCACGCGGTGGATGAGAAGGCGCGGCTCATCTACGAGGACTACGTGTCCATC CTGTCCCCCAAGGAGGTGAGCCTGGACTCCCGGGTGCGGGAGGGGATCAACAAGAAGATG CAGGAACCGTCGGCGCACACCTTCGACGACGCGCAGCTGCAGATCTACACGCTCATGCAC CGGGACTCCTACCCGCGCTTCCTCACCTCCCCTGCCTACCGCGCCCTGCTGCTCCAGGGG GGCTCCCCGTCCTCCACCGAGGCCTAGGCTGCCTCCCGGGCGCCTCCCGCAGGCACAGAC TCCTTTCACCAGAGGGCCCAGCACCCGCAGGCAGGAGCTCGGGCGCGGGGCGGCTCAGAA GCCCCCCTCTCCACCCAGGGGACCTGGTGCCCTAAGGTCCTGCCGAGAGGCAGGTGGCAG GGCCTCTGCCCCGGCAGCCTCTCCCGCCCCAGCCCAGCCATGGCCTGCCCGCTGCTCCTG TGGGGCTCCCCGCTGGGAGAGGAGCCGCCCTCCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCACAGAGGGCCGGAGGAGGCAGACCAGCCCCCCTCGATGTCCAGTCATGAGGCGGCC CCCCCGGCTCCCCCCAGGCGCAACCCCTGCTGCTTGTGCTGGTGCTGCTGTTGCAGCTGC TCCTGGAATGAAGAGCGGCGGCGGGCATGGCGGGCCTCGCGGGAGAGCAGGCCGCAGCCC CTCCCCAGCTGCGAGGTCTGTGCCACACCGAGCCCCGAAGAGGTGCAGAGCTGGGCACAG TCTTTCGACAAGCTGATGCGCAGCCCGGCCGGCCGCGGCGCCTTCCGGGCCTTCCTGCGC ACGGAGTACAGCGAGGAGAACATGCTTTTCTGGCTGGCCTGCGAGGAGCTCAAGGCCGAG GCCGACCGGCACGCGGTGGATGAGAAGGCGCGGCTCATCTACGAGGACTACGTGTCCATC CTGTCCCCCAAGGAGGTGAGCCTGGACTCCCGGGTGCGGGAGGGGATCAACAAGAAGATG CAGGAACCGTCGGCGCACACCTTCGACGACGCGCAGCTGCAGATCTACACGCTCATGCAC CGGGACTCCTACCCGCGCTTCCTCACCTCCCCTGCCTACCGCGCCCTGCTGCTCCAGGGG GGCTCCCCGTCCTCCACCGAGGCCTAGGCTGCCTCCCGGGCGCCTCCCGCAGGCACAGAC TCCTTTCACCAGAGGGCCCAGCACCCGCAGGCAGGAGCTCGGGCGCGGGGCGGCTCAGAA GCCCCCCTCTCCACCCAGGGGACCTGGTGCCCTAAGGTCCTGCCGAGAGGCAGGTGGCAG GGCCTCTGCCCCGGCAGCCTCTCCCGCCCCAGCCCAGCCATGGCCTGCCCGCTGCTCCTG TGGGGCTCCCCGCTGGGAGAGGAGCCGCCCTCCCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 260-372, - strand, RNAz p=0.96811 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 260-372, - strand, RNAz p=0.96811 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-172, gnl|bosTau2|chr13 (35060692-35060861) | |
| 1-172, gnl|Hg17|chr20 (62178446-62178273) | |
| 1-172, gnl|Mm7|chr2 (182192267-182192072) | |
| 205-441, gnl|bosTau2|chr13 (35062146-35062382) | |
| 205-441, gnl|canFam2|chr24 (50562839-50563081) | |
| 205-441, gnl|danRer3|chr2 (23023257-23023015) | |
| 205-441, gnl|dasNov1|scaffold_126471 (5071-5313) | |
| 205-441, gnl|echTel1|scaffold_305572 (1417-1176) | |
| 205-441, gnl|fr1|chrUn (3126475-3126233) | |
| 205-441, gnl|galGal2|chr20 (9061812-9061564) | |
| 205-441, gnl|hg17|chr20 (62175937-62176179) | |
| 205-441, gnl|Hg17|chr20 (62176163-62175935) | |
| 205-441, gnl|loxAfr1|scaffold_34818 (34094-33859) | |
| 205-441, gnl|mm7|chr2 (182190284-182190526) | |
| 205-441, gnl|Mm7|chr2 (182190510-182190282) | |
| 205-441, gnl|monDom2|scaffold_1 (185096612-185096854) | |
| 205-441, gnl|oryCun1|scaffold_139113 (5823-6058) | |
| 205-441, gnl|panTro1|chr21_random (19994012-19994254) | |
| 205-441, gnl|rheMac2|chr10 (268742-268500) | |
| 205-441, gnl|rn3|chr3 (170746555-170746797) | |
| 205-441, gnl|tetNig1|chrUn_random (16847937-16848176) | |
| 205-441, gnl|xenTro1|scaffold_8 (1927928-1927690) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-172, gnl|bosTau2|chr13 (35060692-35060861) | |
| 1-172, gnl|Hg17|chr20 (62178446-62178273) | |
| 1-172, gnl|Mm7|chr2 (182192267-182192072) | |
| 205-441, gnl|bosTau2|chr13 (35062146-35062382) | |
| 205-441, gnl|canFam2|chr24 (50562839-50563081) | |
| 205-441, gnl|danRer3|chr2 (23023257-23023015) | |
| 205-441, gnl|dasNov1|scaffold_126471 (5071-5313) | |
| 205-441, gnl|echTel1|scaffold_305572 (1417-1176) | |
| 205-441, gnl|fr1|chrUn (3126475-3126233) | |
| 205-441, gnl|galGal2|chr20 (9061812-9061564) | |
| 205-441, gnl|hg17|chr20 (62175937-62176179) | |
| 205-441, gnl|Hg17|chr20 (62176163-62175935) | |
| 205-441, gnl|loxAfr1|scaffold_34818 (34094-33859) | |
| 205-441, gnl|mm7|chr2 (182190284-182190526) | |
| 205-441, gnl|Mm7|chr2 (182190510-182190282) | |
| 205-441, gnl|monDom2|scaffold_1 (185096612-185096854) | |
| 205-441, gnl|oryCun1|scaffold_139113 (5823-6058) | |
| 205-441, gnl|panTro1|chr21_random (19994012-19994254) | |
| 205-441, gnl|rheMac2|chr10 (268742-268500) | |
| 205-441, gnl|rn3|chr3 (170746555-170746797) | |
| 205-441, gnl|tetNig1|chrUn_random (16847937-16848176) | |
| 205-441, gnl|xenTro1|scaffold_8 (1927928-1927690) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| med (0.232504) | |
| cag (0.151194) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) | |
| cag (0.151194) | |
| ebs (0.118301) | |
| cty (0.10408) |