Ss1.1-Lng1-LNG010032B05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGGGCTCCTCCCTCGGCCCGCCCCTGAAGGTTTATCTTGTGACCGCGGCAGCTGGCTT TCCTTCCGTGAGCTTGAAACCTCCTGAGCTGCGATGCATTTCTTGGCCGCTGCGTTCCTG CTCCTGACACTCAGCGCTTCTGCCCTGGCCGAGCCGGTGCATTTCAGGGACTGCGGCTCG GGGGTTGGAGTGATAAAGGAAGTGAATGTGAACCCATGTCCCACCCAGCCCTGCCAGCTG CACAAAGGACAGTCTTACAGTGTGAATGTCACCTTCACCAGTAACACTCAGTCGAAAGGC AGCAAAGCCGTGGTGCACGGCATCGTGATGGGCGTCCCGATTCCGTTTCCCATCCCCGAC CCCGATGGTTGTAAGAGCGGAATCAACTGCCCCATCCAGAAAGACCAGACCTACAGCTAC CTGAATAAACTGCCAGTGAAGGCCGAGTACCCCTCTATAAAACTGGTGGTGGAGTGGAAA CTTCAGGATGACAATGACCAGTGTCTCTTCTGCTGGCAAATCCCAGTACAGATTGAAAGC TAGAGCTCTTCAGTGCCACTCTGTGCATCTGGGGGTGACAGAGCAGGGATGGAGGGAGGG GAGGAGAAATCAAGTCTAAACTCACTCAGTGCCATAAGATGAAAGGAATTTCCTAGAAGG CTGTTTCATGCCTCTGAACGCTCCAAAAGCAACTAAGACCCTATTTCCTGAGAGCTCAGA ACTGTTGCCCTTGTAACATCCTTTGTTTAAGGGTTGAAGGAGAGGAGGGCATGAGAATGT AGGGATTGATTTAATTGCCTTCAGTTTTTGTTTTTCTTTTCCTTTTGGAATCAGGAGGGT CCAACCAGACAAGACCCGAATGAGGCTGCTTGGGGATACCGGCTAACTTGCCCTAGGGTT ACCGGGCCTTGCAGCGGAGGACGGGTTTCAAACCACATCCCACTAGCTGGGATCTCCCAC CTGCAGGTTCCTCCTCTCCACGTGCCTCAGTGCATCTGGCCATTGAGCCTCCTTCCTGAC GCTCGGCATCACCTCTAGCTCTGCTGCTTTACGGGTGCAGCCGTGTCCAATGTTGCAGTG GGGGAAGGTGTTCCATGACAGAAATTCACCTCCAATGGCTGGTTCTATGTGGTTAGCTCA TGTCTCCTTTTCTATCTTAGGCGGTTTTCATTAAATGTAGCACTTCCTTAGCAGATGCTT GACTTTTTTCTTTTTTTTTTTAAACAGCATTAACCTGTAGCCTCTTTATGCACCTGGAAA TGTCCCTTTGAATAAAAAAAAAACTTGGCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGGGCTCCTCCCTCGGCCCGCCCCTGAAGGTTTATCTTGTGACCGCGGCAGCTGGCTT TCCTTCCGTGAGCTTGAAACCTCCTGAGCTGCGATGCATTTCTTGGCCGCTGCGTTCCTG CTCCTGACACTCAGCGCTTCTGCCCTGGCCGAGCCGGTGCATTTCAGGGACTGCGGCTCG GGGGTTGGAGTGATAAAGGAAGTGAATGTGAACCCATGTCCCACCCAGCCCTGCCAGCTG CACAAAGGACAGTCTTACAGTGTGAATGTCACCTTCACCAGTAACACTCAGTCGAAAGGC AGCAAAGCCGTGGTGCACGGCATCGTGATGGGCGTCCCGATTCCGTTTCCCATCCCCGAC CCCGATGGTTGTAAGAGCGGAATCAACTGCCCCATCCAGAAAGACCAGACCTACAGCTAC CTGAATAAACTGCCAGTGAAGGCCGAGTACCCCTCTATAAAACTGGTGGTGGAGTGGAAA CTTCAGGATGACAATGACCAGTGTCTCTTCTGCTGGCAAATCCCAGTACAGATTGAAAGC TAGAGCTCTTCAGTGCCACTCTGTGCATCTGGGGGTGACAGAGCAGGGATGGAGGGAGGG GAGGAGAAATCAAGTCTAAACTCACTCAGTGCCATAAGATGAAAGGAATTTCCTAGAAGG CTGTTTCATGCCTCTGAACGCTCCAAAAGCAACTAAGACCCTATTTCCTGAGAGCTCAGA ACTGTTGCCCTTGTAACATCCTTTGTTTAAGGGTTGAAGGAGAGGAGGGCATGAGAATGT AGGGATTGATTTAATTGCCTTCAGTTTTTGTTTTTCTTTTCCTTTTGGAATCAGGAGGGT CCAACCAGACAAGACCCGAATGAGGCTGCTTGGGGATACCGGCTAACTTGCCCTAGGGTT ACCGGGCCTTGCAGCGGAGGACGGGTTTCAAACCACATCCCACTAGCTGGGATCTCCCAC CTGCAGGTTCCTCCTCTCCACGTGCCTCAGTGCATCTGGCCATTGAGCCTCCTTCCTGAC GCTCGGCATCACCTCTAGCTCTGCTGCTTTACGGGTGCAGCCGTGTCCAATGTTGCAGTG GGGGAAGGTGTTCCATGACAGAAATTCACCTCCAATGGCTGGTTCTATGTGGTTAGCTCA TGTCTCCTTTTCTATCTTAGGCGGTTTTCATTAAATGTAGCACTTCCTTAGCAGATGCTT GACTTTTTTCTTTTTTTTTTTAAACAGCATTAACCTGTAGCCTCTTTATGCACCTGGAAA TGTCCCTTTGAATAAAAAAAAAACTTGGCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 496-610, + strand, RNAz p=0.848783 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 496-610, + strand, RNAz p=0.848783 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-176, gnl|bosTau2|chr10 (61041428-61041607) | |
| 1-176, gnl|Hg17|chr14 (74029824-74029648) | |
| 1-176, gnl|Mm7|chr12 (82773253-82773081) | |
| 457-756, gnl|bosTau2|chr10 (61049087-61049383) | |
| 457-756, gnl|Hg17|chr14 (74017235-74016949) | |
| 457-756, gnl|Mm7|chr12 (82757508-82757200) | |
| 805-1014, gnl|bosTau2|chr10 (61049501-61049718) | |
| 805-1014, gnl|canFam2|chr8 (50678020-50678339) | |
| 805-1014, gnl|dasNov1|scaffold_1341 (71364-71648) | |
| 805-1014, gnl|echTel1|scaffold_282763 (54049-54344) | |
| 805-1014, gnl|hg17|chr14 (74016635-74016963) | |
| 805-1014, gnl|Hg17|chr14 (74016889-74016674) | |
| 805-1014, gnl|loxAfr1|scaffold_7876 (73402-73088) | |
| 805-1014, gnl|mm7|chr12 (82756907-82757210) | |
| 805-1014, gnl|Mm7|chr12 (82757153-82756949) | |
| 805-1014, gnl|monDom2|scaffold_8 (60241920-60241696) | |
| 805-1014, gnl|oryCun1|scaffold_198977 (81066-81298) | |
| 805-1014, gnl|panTro1|chr15 (74017219-74017547) | |
| 805-1014, gnl|rheMac2|chr7 (137589392-137589719) | |
| 805-1014, gnl|rn3|chr6 (108797510-108797799) | |
| 1123-1291, gnl|bosTau2|chr10 (61049778-61049930) | |
| 1123-1291, gnl|canFam2|chr8 (50677788-50678019) | |
| 1123-1291, gnl|dasNov1|scaffold_1341 (71160-71363) | |
| 1123-1291, gnl|echTel1|scaffold_282763 (53855-54037) | |
| 1123-1291, gnl|hg17|chr14 (74016407-74016634) | |
| 1123-1291, gnl|Hg17|chr14 (74016566-74016410) | |
| 1123-1291, gnl|loxAfr1|scaffold_7876 (73616-73403) | |
| 1123-1291, gnl|mm7|chr12 (82756696-82756906) | |
| 1123-1291, gnl|Mm7|chr12 (82756863-82756699) | |
| 1123-1291, gnl|monDom2|scaffold_8 (60242181-60241921) | |
| 1123-1291, gnl|oryCun1|scaffold_198977 (80822-81065) | |
| 1123-1291, gnl|panTro1|chr15 (74016991-74017218) | |
| 1123-1291, gnl|rheMac2|chr7 (137589165-137589391) | |
| 1123-1291, gnl|rn3|chr6 (108797300-108797509) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-176, gnl|bosTau2|chr10 (61041428-61041607) | |
| 1-176, gnl|Hg17|chr14 (74029824-74029648) | |
| 1-176, gnl|Mm7|chr12 (82773253-82773081) | |
| 457-756, gnl|bosTau2|chr10 (61049087-61049383) | |
| 457-756, gnl|Hg17|chr14 (74017235-74016949) | |
| 457-756, gnl|Mm7|chr12 (82757508-82757200) | |
| 805-1014, gnl|bosTau2|chr10 (61049501-61049718) | |
| 805-1014, gnl|canFam2|chr8 (50678020-50678339) | |
| 805-1014, gnl|dasNov1|scaffold_1341 (71364-71648) | |
| 805-1014, gnl|echTel1|scaffold_282763 (54049-54344) | |
| 805-1014, gnl|hg17|chr14 (74016635-74016963) | |
| 805-1014, gnl|Hg17|chr14 (74016889-74016674) | |
| 805-1014, gnl|loxAfr1|scaffold_7876 (73402-73088) | |
| 805-1014, gnl|mm7|chr12 (82756907-82757210) | |
| 805-1014, gnl|Mm7|chr12 (82757153-82756949) | |
| 805-1014, gnl|monDom2|scaffold_8 (60241920-60241696) | |
| 805-1014, gnl|oryCun1|scaffold_198977 (81066-81298) | |
| 805-1014, gnl|panTro1|chr15 (74017219-74017547) | |
| 805-1014, gnl|rheMac2|chr7 (137589392-137589719) | |
| 805-1014, gnl|rn3|chr6 (108797510-108797799) | |
| 1123-1291, gnl|bosTau2|chr10 (61049778-61049930) | |
| 1123-1291, gnl|canFam2|chr8 (50677788-50678019) | |
| 1123-1291, gnl|dasNov1|scaffold_1341 (71160-71363) | |
| 1123-1291, gnl|echTel1|scaffold_282763 (53855-54037) | |
| 1123-1291, gnl|hg17|chr14 (74016407-74016634) | |
| 1123-1291, gnl|Hg17|chr14 (74016566-74016410) | |
| 1123-1291, gnl|loxAfr1|scaffold_7876 (73616-73403) | |
| 1123-1291, gnl|mm7|chr12 (82756696-82756906) | |
| 1123-1291, gnl|Mm7|chr12 (82756863-82756699) | |
| 1123-1291, gnl|monDom2|scaffold_8 (60242181-60241921) | |
| 1123-1291, gnl|oryCun1|scaffold_198977 (80822-81065) | |
| 1123-1291, gnl|panTro1|chr15 (74016991-74017218) | |
| 1123-1291, gnl|rheMac2|chr7 (137589165-137589391) | |
| 1123-1291, gnl|rn3|chr6 (108797300-108797509) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| nlu (2.30017) | |
| clu (1.91433) | |
| cov (1.32153) | |
| cga (1.11638) | |
| jca (0.797721) | |
| elu (0.770713) | |
| eje (0.691836) | |
| nje (0.66368) | |
| csp (0.644745) | |
| cly (0.482567) | |
| ece (0.45861) | |
| cag (0.453583) | |
| che (0.408942) | |
| ute (0.398353) | |
| eru (0.360144) | |
| sto (0.359648) | |
| ill (0.351185) | |
| cty (0.31224) | |
| hyp (0.285673) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| cbl (0.229595) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (2.30017) | |
| clu (1.91433) | |
| cov (1.32153) | |
| cga (1.11638) | |
| jca (0.797721) | |
| elu (0.770713) | |
| eje (0.691836) | |
| nje (0.66368) | |
| csp (0.644745) | |
| cly (0.482567) | |
| ece (0.45861) | |
| cag (0.453583) | |
| che (0.408942) | |
| ute (0.398353) | |
| eru (0.360144) | |
| sto (0.359648) | |
| ill (0.351185) | |
| cty (0.31224) | |
| hyp (0.285673) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| cbl (0.229595) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) |