Ss1.1-Lng1-LNG010032E02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAACAAAGTTTAGGCAAACCAGATCAAAAAGATTTGAATGAAAACCTTGCTGCCACTC AAGGGCTGGCCCATATGATTGCTGAGTGCAAGAAGCTTTTCCAGGTTCCTGAGGAAATGA GCCGATGTCGAAACTCCTACACCGAACAAGAGCTGAAGCCCCTCACCCTAGAAGCATTAG GACGTCTTTGCAATGACGAGTCAGCCAGCTACCAGCACTTCCTCCAAGACTGTGTGGACA GCCTATTTAAAGAGGTCAAAGAGAAGTTCAAAGGCTGGGTCAGCTACTCCACATCTGAGC AGGCTGAGCTGTCCTATAAGAAGGTGAGTGAAGGACCACCTCTAAGGCTTTGGAGGGCAA CCATCGAAGTTCCTGCAATGCCTGAGGAAATTTTGAAGCGCCTACTTAAAGAGCAGCACC TCTGGGATGTAGACTTGTTGGATTCCAAAGTGATTGAGATCCTGGACAGCCAAACTGAAA TTTACCAGTATGTCCAAAACAGTATGGCACCCCATCCTGCTCGGGACTACGTTGTTTTGA GAACATGGAGGACCAACTTACCCAAGGGGGCATGTGCCCTTTTACTCACCTCTGTGGATC ACGACCGGGCCCCTGTGGTGGGTGTGAGGGTCAATGTGCTCCTGTCCAGGTATCTGATCG AACCCTGCGGGTCAGGGAAATCCAAACTCACCTACATGTGCAGAGCTGACTTAAGGGGCC ACATGCCAGAGTGGTACACGAAATCTTTTGGACACTTGTGTGCAGCTGAAGTTGTAAAGA TCCGAGACTCCTTCAGTAATCAGAACACTGAAACCAAAGACACCAAATCTAGGTGATTCA CAGAGCAAAAGCAACTGTGTCCATTATCTGGGCATTTGTTCTAGAACCCTTGCCAGTCCT TGGAAGACTGAGTTCTGCATCTGATCCTGAAAGAGAGAAAACTACAACTTGGAGTGTAGG AATTGACTAGAGTGATCTGATACATTTTTAAAGCTGCTTCCTGTTTGTTCAAGGTCTGTG TTACGGACCTTGACTGGAATATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAACAAAGTTTAGGCAAACCAGATCAAAAAGATTTGAATGAAAACCTTGCTGCCACTC AAGGGCTGGCCCATATGATTGCTGAGTGCAAGAAGCTTTTCCAGGTTCCTGAGGAAATGA GCCGATGTCGAAACTCCTACACCGAACAAGAGCTGAAGCCCCTCACCCTAGAAGCATTAG GACGTCTTTGCAATGACGAGTCAGCCAGCTACCAGCACTTCCTCCAAGACTGTGTGGACA GCCTATTTAAAGAGGTCAAAGAGAAGTTCAAAGGCTGGGTCAGCTACTCCACATCTGAGC AGGCTGAGCTGTCCTATAAGAAGGTGAGTGAAGGACCACCTCTAAGGCTTTGGAGGGCAA CCATCGAAGTTCCTGCAATGCCTGAGGAAATTTTGAAGCGCCTACTTAAAGAGCAGCACC TCTGGGATGTAGACTTGTTGGATTCCAAAGTGATTGAGATCCTGGACAGCCAAACTGAAA TTTACCAGTATGTCCAAAACAGTATGGCACCCCATCCTGCTCGGGACTACGTTGTTTTGA GAACATGGAGGACCAACTTACCCAAGGGGGCATGTGCCCTTTTACTCACCTCTGTGGATC ACGACCGGGCCCCTGTGGTGGGTGTGAGGGTCAATGTGCTCCTGTCCAGGTATCTGATCG AACCCTGCGGGTCAGGGAAATCCAAACTCACCTACATGTGCAGAGCTGACTTAAGGGGCC ACATGCCAGAGTGGTACACGAAATCTTTTGGACACTTGTGTGCAGCTGAAGTTGTAAAGA TCCGAGACTCCTTCAGTAATCAGAACACTGAAACCAAAGACACCAAATCTAGGTGATTCA CAGAGCAAAAGCAACTGTGTCCATTATCTGGGCATTTGTTCTAGAACCCTTGCCAGTCCT TGGAAGACTGAGTTCTGCATCTGATCCTGAAAGAGAGAAAACTACAACTTGGAGTGTAGG AATTGACTAGAGTGATCTGATACATTTTTAAAGCTGCTTCCTGTTTGTTCAAGGTCTGTG TTACGGACCTTGACTGGAATATAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 3-106, gnl|bosTau2|chr3 (1103901-1103798) | |
| 3-106, gnl|canFam2|chr16 (39495579-39495733) | |
| 3-106, gnl|danRer3|chr1 (10387511-10387360) | |
| 3-106, gnl|dasNov1|scaffold_1795 (4520-4658) | |
| 3-106, gnl|fr1|chrUn (56954309-56954182) | |
| 3-106, gnl|galGal2|chr4 (65068363-65068220) | |
| 3-106, gnl|hg17|chr8 (12993184-12993347) | |
| 3-106, gnl|Hg17|chr8 (12993299-12993196) | |
| 3-106, gnl|loxAfr1|scaffold_108 (169173-169019) | |
| 3-106, gnl|mm7|chr8 (35341807-35341957) | |
| 3-106, gnl|Mm7|chr8 (35341922-35341819) | |
| 3-106, gnl|monDom2|scaffold_32 (15680929-15680772) | |
| 3-106, gnl|oryCun1|scaffold_200168 (325092-324929) | |
| 3-106, gnl|panTro1|chr7 (13590643-13590806) | |
| 3-106, gnl|rheMac2|chr8 (12912385-12912548) | |
| 3-106, gnl|rn3|chr16 (59349991-59349844) | |
| 3-106, gnl|tetNig1|chrUn_random (128358517-128358667) | |
| 3-106, gnl|xenTro1|scaffold_401 (212766-212918) | |
| 322-541, gnl|bosTau2|chr11 (43877755-43877974) | |
| 322-541, gnl|canFam2|chr25 (10096116-10095855) | |
| 322-541, gnl|danRer3|chr19 (30741576-30741814) | |
| 322-541, gnl|dasNov1|scaffold_1795 (2838-3097) | |
| 322-541, gnl|echTel1|scaffold_308696 (4727-4467) | |
| 322-541, gnl|fr1|chrUn (56954957-56954722) | |
| 322-541, gnl|galGal2|chr1 (166271225-166270988) | |
| 322-541, gnl|hg17|chr13 (32582003-32582263) | |
| 322-541, gnl|Hg17|chr13 (32582229-32582010) | |
| 322-541, gnl|loxAfr1|scaffold_70304 (1542-1282) | |
| 322-541, gnl|mm7|chr5 (149977594-149977854) | |
| 322-541, gnl|Mm7|chr5 (149977820-149977601) | |
| 322-541, gnl|monDom2|scaffold_15 (43695622-43695894) | |
| 322-541, gnl|oryCun1|scaffold_200168 (327421-327184) | |
| 322-541, gnl|panTro1|chr14 (31781142-31781402) | |
| 322-541, gnl|rheMac2|chr17 (12484951-12485211) | |
| 322-541, gnl|rn3|chr12 (3689014-3688754) | |
| 322-541, gnl|tetNig1|chr16 (4759037-4758813) | |
| 322-541, gnl|xenTro1|scaffold_384 (898770-898543) | |
| 714-1044, gnl|bosTau2|chr3 (1099618-1099301) | |
| 714-1044, gnl|Hg17|chr8 (12987813-12987483) | |
| 714-1044, gnl|Mm7|chr8 (35337419-35337122) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-106, gnl|bosTau2|chr3 (1103901-1103798) | |
| 3-106, gnl|canFam2|chr16 (39495579-39495733) | |
| 3-106, gnl|danRer3|chr1 (10387511-10387360) | |
| 3-106, gnl|dasNov1|scaffold_1795 (4520-4658) | |
| 3-106, gnl|fr1|chrUn (56954309-56954182) | |
| 3-106, gnl|galGal2|chr4 (65068363-65068220) | |
| 3-106, gnl|hg17|chr8 (12993184-12993347) | |
| 3-106, gnl|Hg17|chr8 (12993299-12993196) | |
| 3-106, gnl|loxAfr1|scaffold_108 (169173-169019) | |
| 3-106, gnl|mm7|chr8 (35341807-35341957) | |
| 3-106, gnl|Mm7|chr8 (35341922-35341819) | |
| 3-106, gnl|monDom2|scaffold_32 (15680929-15680772) | |
| 3-106, gnl|oryCun1|scaffold_200168 (325092-324929) | |
| 3-106, gnl|panTro1|chr7 (13590643-13590806) | |
| 3-106, gnl|rheMac2|chr8 (12912385-12912548) | |
| 3-106, gnl|rn3|chr16 (59349991-59349844) | |
| 3-106, gnl|tetNig1|chrUn_random (128358517-128358667) | |
| 3-106, gnl|xenTro1|scaffold_401 (212766-212918) | |
| 322-541, gnl|bosTau2|chr11 (43877755-43877974) | |
| 322-541, gnl|canFam2|chr25 (10096116-10095855) | |
| 322-541, gnl|danRer3|chr19 (30741576-30741814) | |
| 322-541, gnl|dasNov1|scaffold_1795 (2838-3097) | |
| 322-541, gnl|echTel1|scaffold_308696 (4727-4467) | |
| 322-541, gnl|fr1|chrUn (56954957-56954722) | |
| 322-541, gnl|galGal2|chr1 (166271225-166270988) | |
| 322-541, gnl|hg17|chr13 (32582003-32582263) | |
| 322-541, gnl|Hg17|chr13 (32582229-32582010) | |
| 322-541, gnl|loxAfr1|scaffold_70304 (1542-1282) | |
| 322-541, gnl|mm7|chr5 (149977594-149977854) | |
| 322-541, gnl|Mm7|chr5 (149977820-149977601) | |
| 322-541, gnl|monDom2|scaffold_15 (43695622-43695894) | |
| 322-541, gnl|oryCun1|scaffold_200168 (327421-327184) | |
| 322-541, gnl|panTro1|chr14 (31781142-31781402) | |
| 322-541, gnl|rheMac2|chr17 (12484951-12485211) | |
| 322-541, gnl|rn3|chr12 (3689014-3688754) | |
| 322-541, gnl|tetNig1|chr16 (4759037-4758813) | |
| 322-541, gnl|xenTro1|scaffold_384 (898770-898543) | |
| 714-1044, gnl|bosTau2|chr3 (1099618-1099301) | |
| 714-1044, gnl|Hg17|chr8 (12987813-12987483) | |
| 714-1044, gnl|Mm7|chr8 (35337419-35337122) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| pla (0.267344) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| eep (0.122564) | |
| jca (0.11396) |