Non-Coding RNA Search

Ss1.1-Lng1-LNG010033B08.5

Sequence:


               
               TGGAGCTCAAGTGCTGGCAACGGGCAAGTCTGCTGGGGAGGAAACTGATATCAAATATGC
CCTCATCGGGACTGCTCTGGGCTTCATCATATCAGCTGGCTTTCTGGCCCTGAAAATCTG
CATGATCAGGAAGCACTTGTTTGATAATGACTCCTCAGACCTGAGAAGCATGAACGCGGG
CTCCAGTGAGACCATGGCGCTAAAGAAGAGAGCCCCAAGGTTAAACCTCAGTCTCTCTGA
AAGAAATGCACAAGTGATTGAGCTCTGAGCAAACAGCCTCTTAGAAGGGTTTCAGCACTC
TGGACTCCTGCCTACAGTTGCAGTCTTAGAGACAGCTTGAATTTGAGCACCAAGGCTGCT
GATGGACCTTCACAAAGAACTCAAAATCCAGAGCAAATAATAGAGCATACAGATGCTGCA
ATACCTCTATGCTAAAGGAAAATGTTGCTTCTCTTCTACAAGAAGCTGATTGCATAGACA
GATGTAAGAGCAATCTTTCCAGCAGTAAGAAAGAATTGAAGCCAGCAAATCTTCACTGCC
TATCCTGTTCCCCATGTTGGAGCTGGTCATGCTGCATGATGTCTTTGTGTCCATATCAGT
GGAACCTACCTGCAGCAAATGGCTCATGGAATGAGAACCAAACTCAAGACACAACTTCTT
TAGCACCACCGTCTTACCAAGAGATGAGCCACATTTTCTAGGACTGTTAGCCTCACCTTC
TTAGCTGCCAGAAGAATCCCTCTGTCAACATTCAAGGGCCCTGAAACATGGAAACTAAGG
GGTAGTCTCCATTCCCATAAATGAAAGACAGACCTTCCAAAGGAAGAAATGGCAGGCTGA
ACTGGAGTGGGAGTAAAGGGTCTGATGGCCATGGAATGGGCCTGCAGCTCTGCAGCGCTT
CAAATGGTGGAGTCAACCAAGGATTAAATGAGAAAACAGCTGCAGTGCCTTGCAGAGAGC
TATACCAATGCAAGTGCTTATTGCTCTGCTTATGGAATTATTTTGTGGTGATGATTCCAA
TGCCCATTTCTTATCATGGAGGACATAACTGGCAGAGGCTTAGGAAACCCACATCTTTAA
TTATTGCCATAAACCTAAGTCTCTGTGGTACAGGCCGCATTCATATTTCTCGCCCCTCTA
ATAGTAACCCTGTATTTCTGAGCTGTGTTAAGGAACGCTCTTTGCCCTTTCATTCAACAG
AAATACAGGTGTCTGTATGGACTGGCTCTTCTTAGATTGGGTTACTCTCCTTGTGTGTGA
TGAAAGATGAGCTATATTTCAAAACAAAGCACTGTGTTATAATAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGCTCAAGTGCTGGCAACGGGCAAGTCTGCTGGGGAGGAAACTGATATCAAATATGC
CCTCATCGGGACTGCTCTGGGCTTCATCATATCAGCTGGCTTTCTGGCCCTGAAAATCTG
CATGATCAGGAAGCACTTGTTTGATAATGACTCCTCAGACCTGAGAAGCATGAACGCGGG
CTCCAGTGAGACCATGGCGCTAAAGAAGAGAGCCCCAAGGTTAAACCTCAGTCTCTCTGA
AAGAAATGCACAAGTGATTGAGCTCTGAGCAAACAGCCTCTTAGAAGGGTTTCAGCACTC
TGGACTCCTGCCTACAGTTGCAGTCTTAGAGACAGCTTGAATTTGAGCACCAAGGCTGCT
GATGGACCTTCACAAAGAACTCAAAATCCAGAGCAAATAATAGAGCATACAGATGCTGCA
ATACCTCTATGCTAAAGGAAAATGTTGCTTCTCTTCTACAAGAAGCTGATTGCATAGACA
GATGTAAGAGCAATCTTTCCAGCAGTAAGAAAGAATTGAAGCCAGCAAATCTTCACTGCC
TATCCTGTTCCCCATGTTGGAGCTGGTCATGCTGCATGATGTCTTTGTGTCCATATCAGT
GGAACCTACCTGCAGCAAATGGCTCATGGAATGAGAACCAAACTCAAGACACAACTTCTT
TAGCACCACCGTCTTACCAAGAGATGAGCCACATTTTCTAGGACTGTTAGCCTCACCTTC
TTAGCTGCCAGAAGAATCCCTCTGTCAACATTCAAGGGCCCTGAAACATGGAAACTAAGG
GGTAGTCTCCATTCCCATAAATGAAAGACAGACCTTCCAAAGGAAGAAATGGCAGGCTGA
ACTGGAGTGGGAGTAAAGGGTCTGATGGCCATGGAATGGGCCTGCAGCTCTGCAGCGCTT
CAAATGGTGGAGTCAACCAAGGATTAAATGAGAAAACAGCTGCAGTGCCTTGCAGAGAGC
TATACCAATGCAAGTGCTTATTGCTCTGCTTATGGAATTATTTTGTGGTGATGATTCCAA
TGCCCATTTCTTATCATGGAGGACATAACTGGCAGAGGCTTAGGAAACCCACATCTTTAA
TTATTGCCATAAACCTAAGTCTCTGTGGTACAGGCCGCATTCATATTTCTCGCCCCTCTA
ATAGTAACCCTGTATTTCTGAGCTGTGTTAAGGAACGCTCTTTGCCCTTTCATTCAACAG
AAATACAGGTGTCTGTATGGACTGGCTCTTCTTAGATTGGGTTACTCTCCTTGTGTGTGA
TGAAAGATGAGCTATATTTCAAAACAAAGCACTGTGTTATAATAATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55959825|emb|CAI12987.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55959825|emb|CAI12987.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-1230, + strand, RNAz p=0.998653

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-1230, + strand, RNAz p=0.998653

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR618023, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR618023, +

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               47-185, gnl|bosTau2|chr28 (33397283-33397421)
               

               
               47-185, gnl|Hg17|chr10 (50045061-50044923)
               

               
               47-185, gnl|Mm7|chr14 (30238129-30238258)
               


               
               242-1057, gnl|bosTau2|chr28 (33405041-33405826)
               

               
               242-1057, gnl|Hg17|chr10 (50033962-50033148)
               


               
               1088-1308, gnl|bosTau2|chr28 (33405828-33406045)
               

               
               1088-1308, gnl|Hg17|chr10 (50033146-50032932)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-185, gnl|bosTau2|chr28 (33397283-33397421)
               

               
               47-185, gnl|Hg17|chr10 (50045061-50044923)
               

               
               47-185, gnl|Mm7|chr14 (30238129-30238258)
               


               
               242-1057, gnl|bosTau2|chr28 (33405041-33405826)
               

               
               242-1057, gnl|Hg17|chr10 (50033962-50033148)
               


               
               1088-1308, gnl|bosTau2|chr28 (33405828-33406045)
               

               
               1088-1308, gnl|Hg17|chr10 (50033146-50032932)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	47-185, gnl\|bosTau2\|chr28 (33397283-33397421)
	47-185, gnl\|Hg17\|chr10 (50045061-50044923)
	47-185, gnl\|Mm7\|chr14 (30238129-30238258)

	242-1057, gnl\|bosTau2\|chr28 (33405041-33405826)
	242-1057, gnl\|Hg17\|chr10 (50033962-50033148)

	1088-1308, gnl\|bosTau2\|chr28 (33405828-33406045)
	1088-1308, gnl\|Hg17\|chr10 (50033146-50032932)