Non-Coding RNA Search

Ss1.1-Lng1-LNG010033C05.5

Sequence:


               
               TCGTCTTTCAAGCGAAATCTGAATTCCTCCCGGAGATTCCAGCTTTGAGCAGTCCAGAGA
GAACACGAAGCCCAACTGGGAAACTGAGGCAAAGGTTCGGCGTACCTTCCAACGACCAGG
CTCAAGGGGACGGACAAGTGGAGACCGCGGACAATCCAAGTCGGGGATGAAAGTTGGAAG
TGACGAGGAAGGACTGGCTGCCTTCGAAAGGAAGCTAGGGAAGCCAGCAAGGATTACAAG
CGCGGCCTCCTGAGTCCTTTAGGGTTACGCCGCAGTTCAGCCCCTTCCCCACACTCAGTT
CGAATCTTCCTGCCACTTCCAGACAGACGGAGGACTCCCAACATTCCCACAGTTCCCAAC
AGACGCCTCTCCGAGGGAAGCCGCGCCGGGAGGGCGGGGGCCCAAGAGTCCACAGCCCCT
CTCGCCTGGGCCCAAGTCGCCCCCAGTCCCGGAGCGGCCGCGGCCTCCGCCCCCCCGTCC
CGGTCCTGCCCGGCCGCGGTGGGCCTTACCTTGAGCGCAAGTCGCCCCCAGTCCCGGAGC
GGCCGCGGCCTCCGCCCCCCGGTCCCGGTCCTGCCCGGCCGCGGTGGGCCTTACCTTGAG
CGCCAGGTGGTGGACGCGGCCCAGGCCGGGCTCGGCCAGCAGCTGCAGCAGCCCCAGCAG
CGGGAGCAGCCGAAGTCCGGCGGCCAGCAGAGGACTGCGTGAGCCCGAGAGGCCGACGGG
CGCCGGGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTCTTTCAAGCGAAATCTGAATTCCTCCCGGAGATTCCAGCTTTGAGCAGTCCAGAGA
GAACACGAAGCCCAACTGGGAAACTGAGGCAAAGGTTCGGCGTACCTTCCAACGACCAGG
CTCAAGGGGACGGACAAGTGGAGACCGCGGACAATCCAAGTCGGGGATGAAAGTTGGAAG
TGACGAGGAAGGACTGGCTGCCTTCGAAAGGAAGCTAGGGAAGCCAGCAAGGATTACAAG
CGCGGCCTCCTGAGTCCTTTAGGGTTACGCCGCAGTTCAGCCCCTTCCCCACACTCAGTT
CGAATCTTCCTGCCACTTCCAGACAGACGGAGGACTCCCAACATTCCCACAGTTCCCAAC
AGACGCCTCTCCGAGGGAAGCCGCGCCGGGAGGGCGGGGGCCCAAGAGTCCACAGCCCCT
CTCGCCTGGGCCCAAGTCGCCCCCAGTCCCGGAGCGGCCGCGGCCTCCGCCCCCCCGTCC
CGGTCCTGCCCGGCCGCGGTGGGCCTTACCTTGAGCGCAAGTCGCCCCCAGTCCCGGAGC
GGCCGCGGCCTCCGCCCCCCGGTCCCGGTCCTGCCCGGCCGCGGTGGGCCTTACCTTGAG
CGCCAGGTGGTGGACGCGGCCCAGGCCGGGCTCGGCCAGCAGCTGCAGCAGCCCCAGCAG
CGGGAGCAGCCGAAGTCCGGCGGCCAGCAGAGGACTGCGTGAGCCCGAGAGGCCGACGGG
CGCCGGGGCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-292, - strand, RNAz p=0.555053

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-292, - strand, RNAz p=0.555053

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-521, gnl|bosTau2|chr11 (80633259-80632696)
               

               
               6-521, gnl|Hg17|chr9 (129896416-129895895)
               

               
               6-521, gnl|Mm7|chr2 (31160284-31159781)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-521, gnl|bosTau2|chr11 (80633259-80632696)
               

               
               6-521, gnl|Hg17|chr9 (129896416-129895895)
               

               
               6-521, gnl|Mm7|chr2 (31160284-31159781)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               bla (0.124347)

	6-521, gnl\|bosTau2\|chr11 (80633259-80632696)
	6-521, gnl\|Hg17\|chr9 (129896416-129895895)
	6-521, gnl\|Mm7\|chr2 (31160284-31159781)