Non-Coding RNA Search

Ss1.1-Lng1-LNG010033G06.5

Sequence:


               
               AGTGCGCTGGAAGAAGAAGCTTCCAGGTAGCGGCCCGCGGAGTCTGACCCAGAGTACGAC
GAGGCAGTCGGCGGGAGCCCACGGTCCCTGGGCGGCCTCTTTAAGGGAGGGGGCGGAGCC
ACGTGGAAGGATCGCGAGGCTCCAGACTTCCTGAGCCCAGGTCCCCCCAGCTCAGTGCAG
CCATGAGTGCGGAGGTGAAGGTGACAGGGCAGAACCAGGAGCAATTCCTGCTCCTGGCGA
AGTCGGCCAAGGGGGCAGCGCTGGCCACACTCATCCACCAGGTGCTGGAGGCCCCTGGTG
TCTACGTGTTTGGGGAACTGCTGGATATGCCTAATGTTAGAGAGCTGGCTGAGAGTGACT
TCGCTTCCACGTTCCGGCTGCTCACGGTGTTTGCTTATGGGACATACGCTGACTACTTAG
CTGAAGCCCGGAATCTTCCCCCACTCACAGAGGCTCAGAAGAATAAGCTTAGACACCTGT
CAGTTGTCACCCTGGCTGCCAAGGTCAAGTGTATCCCATATGCAGTGCTGCTGGAGGCCC
TGGCCCTGCGGAACGTGCGGCAGCTGGAGGACCTGGTCATCGAGGCCGTGTACGCCGACG
TGCTTCGCGGCTCCCTGGACCAGCGCAACCAGCGGCTGGAGGTTGACTACAGCATCGGGC
GGGACATCCAGCGCCAGGACCTCAGTGCCATTGCCCGAACCCTGCAGGAGTGGTGTGTGG
GCTGCGAGGTGGTGCTCTCTGGCATTGAGGAGCAGGTGAGCCGGGCCAACCAGCACAAGG
AGCAGCAGCTGGGCCTGAAGCAGCAGATCGAGAGTGAGGTCGCCAACCTTAAAAAAACCA
TCAAAGTTACTACCGCAGCCGCTGCCGCAGCCACATCTCAGGATCCCGAGCAACACCTGA
CGGAGCTGAGGGAACCGGCTCCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCGA
AGGGCAAGGGGCTCCGAGGGAGCGCCAAGATTTGGTCCAAGTCGAACTGAAGGGACTGTC
GGTTCTTCCCCGGATGTGGGTCCTAGCTGCCTGCCTGCCCCTTAGGAGTCCTCAGAGAGC
CTTCCTGTGCCCCTGGCCAGCTGATAATCTAGGTTCATGACCCCTCCCCGCCCTTCTCTC
CCCCACCCCCAAGCAGAGATGACACCTTCTCTAGGGAGGAGGCAAGTACAAGTCATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCGCTGGAAGAAGAAGCTTCCAGGTAGCGGCCCGCGGAGTCTGACCCAGAGTACGAC
GAGGCAGTCGGCGGGAGCCCACGGTCCCTGGGCGGCCTCTTTAAGGGAGGGGGCGGAGCC
ACGTGGAAGGATCGCGAGGCTCCAGACTTCCTGAGCCCAGGTCCCCCCAGCTCAGTGCAG
CCATGAGTGCGGAGGTGAAGGTGACAGGGCAGAACCAGGAGCAATTCCTGCTCCTGGCGA
AGTCGGCCAAGGGGGCAGCGCTGGCCACACTCATCCACCAGGTGCTGGAGGCCCCTGGTG
TCTACGTGTTTGGGGAACTGCTGGATATGCCTAATGTTAGAGAGCTGGCTGAGAGTGACT
TCGCTTCCACGTTCCGGCTGCTCACGGTGTTTGCTTATGGGACATACGCTGACTACTTAG
CTGAAGCCCGGAATCTTCCCCCACTCACAGAGGCTCAGAAGAATAAGCTTAGACACCTGT
CAGTTGTCACCCTGGCTGCCAAGGTCAAGTGTATCCCATATGCAGTGCTGCTGGAGGCCC
TGGCCCTGCGGAACGTGCGGCAGCTGGAGGACCTGGTCATCGAGGCCGTGTACGCCGACG
TGCTTCGCGGCTCCCTGGACCAGCGCAACCAGCGGCTGGAGGTTGACTACAGCATCGGGC
GGGACATCCAGCGCCAGGACCTCAGTGCCATTGCCCGAACCCTGCAGGAGTGGTGTGTGG
GCTGCGAGGTGGTGCTCTCTGGCATTGAGGAGCAGGTGAGCCGGGCCAACCAGCACAAGG
AGCAGCAGCTGGGCCTGAAGCAGCAGATCGAGAGTGAGGTCGCCAACCTTAAAAAAACCA
TCAAAGTTACTACCGCAGCCGCTGCCGCAGCCACATCTCAGGATCCCGAGCAACACCTGA
CGGAGCTGAGGGAACCGGCTCCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCGA
AGGGCAAGGGGCTCCGAGGGAGCGCCAAGATTTGGTCCAAGTCGAACTGAAGGGACTGTC
GGTTCTTCCCCGGATGTGGGTCCTAGCTGCCTGCCTGCCCCTTAGGAGTCCTCAGAGAGC
CTTCCTGTGCCCCTGGCCAGCTGATAATCTAGGTTCATGACCCCTCCCCGCCCTTCTCTC
CCCCACCCCCAAGCAGAGATGACACCTTCTCTAGGGAGGAGGCAAGTACAAGTCATGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R762_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R762_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               136-255, - strand, RNAz p=0.586162
               

               
               1095-1200, - strand, RNAz p=0.885049

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               136-255, - strand, RNAz p=0.586162
               

               
               1095-1200, - strand, RNAz p=0.885049

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               7-568, gnl|bosTau2|chr10 (17079225-17079766)
               

               
               7-568, gnl|Hg17|chr12 (6703560-6708732)
               


               
               712-820, gnl|bosTau2|chr5 (60503147-60503039)
               

               
               712-820, gnl|Hg17|chr12 (6709828-6709936)
               

               
               712-820, gnl|Mm7|chr6 (124985824-124985716)
               


               
               970-1200, gnl|bosTau2|chr5 (60502575-60502334)
               

               
               970-1200, gnl|Hg17|chr12 (6710426-6710650)
               

               
               970-1200, gnl|Mm7|chr6 (124985265-124985042)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-568, gnl|bosTau2|chr10 (17079225-17079766)
               

               
               7-568, gnl|Hg17|chr12 (6703560-6708732)
               


               
               712-820, gnl|bosTau2|chr5 (60503147-60503039)
               

               
               712-820, gnl|Hg17|chr12 (6709828-6709936)
               

               
               712-820, gnl|Mm7|chr6 (124985824-124985716)
               


               
               970-1200, gnl|bosTau2|chr5 (60502575-60502334)
               

               
               970-1200, gnl|Hg17|chr12 (6710426-6710650)
               

               
               970-1200, gnl|Mm7|chr6 (124985265-124985042)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               elu (0.385356)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

	136-255, - strand, RNAz p=0.586162
	1095-1200, - strand, RNAz p=0.885049

	7-568, gnl\|bosTau2\|chr10 (17079225-17079766)
	7-568, gnl\|Hg17\|chr12 (6703560-6708732)

	712-820, gnl\|bosTau2\|chr5 (60503147-60503039)
	712-820, gnl\|Hg17\|chr12 (6709828-6709936)
	712-820, gnl\|Mm7\|chr6 (124985824-124985716)

	970-1200, gnl\|bosTau2\|chr5 (60502575-60502334)
	970-1200, gnl\|Hg17\|chr12 (6710426-6710650)
	970-1200, gnl\|Mm7\|chr6 (124985265-124985042)

	elu (0.385356)
	sme (0.305437)
	fli (0.202881)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	cov (0.132153)
	eep (0.122564)
	eru (0.120048)
	clu (0.119646)