Ss1.1-Lng1-LNG010033G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAGCATCTGATTAGAACCATATCTCGCCGGGAGTGGCCCGCGGCTCCGAGGCTCCCGG GCCGGCGGCTATTTAAGCGCGGCCGCCGTGTCGGCTGCGCGGCAGCCAGGAGGCTCGGGC ACCGGGAGTCATGCTCGCATCGCAGAGGCGCTAACTAGCCTGTGTCTGTAGCTGGTAATG TTGATTTGAGCTGTCTCCATCGGGGATCGCCTGGTGCCACTTGGTGTCTGCTGGTTCAGG GTTTGCTGTCTGCCTTCTTACAATGTCTAACGAAGTAGAAACGAGTGCAACGAATGGTCA GCCTGACCAACAGGCTGCACCAAAGGCACCATCAAAGAAGGAAAAGAAGAAAGGCTCAGA AAAGACGGATGAATATCTTTTGGCCAGATTCAAAGGTGATGGTGTGAAATACAAGGCCAA GCTTATCGGCATTGATGATGTGCCAGATGCAAGAGGGGATAAAATGAGCCAAGATTCTAT GATGAAACTAAAGGGAATGGCAGCCGCTGGTCGGTCTCAGGGACAACATAAACAGAGGAT CTGGGTCAACATTTCTCTTTCTGGAATAAAAATAATTGATGAGAAAACTGGGGTAATAGA GCATGAACACCCAGTAAATAAGATTTCTTTCATTGCCCGTGATGTGACAGACAACCGGGC ATTTGGTTATGTGTGTGGAGGAGAAGGCCAGCACCAGTTTTTTGCCATAAAAACAGGGCA ACAGGCAGAGCCATTAGTCGTTGACCTTAAAGACCTTTTCCAAGTTATCTATAATGTAAA GAAAAAGGAAGAAGAAAAGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAGCATCTGATTAGAACCATATCTCGCCGGGAGTGGCCCGCGGCTCCGAGGCTCCCGG GCCGGCGGCTATTTAAGCGCGGCCGCCGTGTCGGCTGCGCGGCAGCCAGGAGGCTCGGGC ACCGGGAGTCATGCTCGCATCGCAGAGGCGCTAACTAGCCTGTGTCTGTAGCTGGTAATG TTGATTTGAGCTGTCTCCATCGGGGATCGCCTGGTGCCACTTGGTGTCTGCTGGTTCAGG GTTTGCTGTCTGCCTTCTTACAATGTCTAACGAAGTAGAAACGAGTGCAACGAATGGTCA GCCTGACCAACAGGCTGCACCAAAGGCACCATCAAAGAAGGAAAAGAAGAAAGGCTCAGA AAAGACGGATGAATATCTTTTGGCCAGATTCAAAGGTGATGGTGTGAAATACAAGGCCAA GCTTATCGGCATTGATGATGTGCCAGATGCAAGAGGGGATAAAATGAGCCAAGATTCTAT GATGAAACTAAAGGGAATGGCAGCCGCTGGTCGGTCTCAGGGACAACATAAACAGAGGAT CTGGGTCAACATTTCTCTTTCTGGAATAAAAATAATTGATGAGAAAACTGGGGTAATAGA GCATGAACACCCAGTAAATAAGATTTCTTTCATTGCCCGTGATGTGACAGACAACCGGGC ATTTGGTTATGTGTGTGGAGGAGAAGGCCAGCACCAGTTTTTTGCCATAAAAACAGGGCA ACAGGCAGAGCCATTAGTCGTTGACCTTAAAGACCTTTTCCAAGTTATCTATAATGTAAA GAAAAAGGAAGAAGAAAAGAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 338-456, + strand, RNAz p=0.794048 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 338-456, + strand, RNAz p=0.794048 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-164, gnl|bosTau2|chr20 (21552261-21552098) | |
| 1-164, gnl|dasNov1|scaffold_61197 (7047-6828) | |
| 1-164, gnl|echTel1|scaffold_305719 (6828-7041) | |
| 1-164, gnl|galGal2|chrZ_random (11345867-11346114) | |
| 1-164, gnl|hg17|chr5 (39460583-39460807) | |
| 1-164, gnl|Hg17|chr5 (39460828-39460660) | |
| 1-164, gnl|mm7|chr15 (6214016-6213805) | |
| 1-164, gnl|Mm7|chr15 (6213782-6213927) | |
| 1-164, gnl|monDom2|scaffold_20 (32118594-32118385) | |
| 1-164, gnl|oryCun1|scaffold_201173 (301738-301974) | |
| 1-164, gnl|panTro1|chr4 (77263406-77263176) | |
| 1-164, gnl|rheMac2|chr6 (39243728-39243959) | |
| 1-164, gnl|rn3|chr2 (55612758-55612523) | |
| 338-497, gnl|bosTau2|chr10 (25927967-25928125) | |
| 338-497, gnl|Hg17|chr5 (39429246-39429109) | |
| 338-497, gnl|Mm7|chr15 (6245228-6245364) | |
| 592-723, gnl|bosTau2|chr20 (21512474-21512343) | |
| 592-723, gnl|canFam2|chr4 (72827970-72827839) | |
| 592-723, gnl|danRer3|chr5 (48164823-48164952) | |
| 592-723, gnl|dasNov1|scaffold_91848 (3127-2999) | |
| 592-723, gnl|echTel1|scaffold_313338 (35694-35563) | |
| 592-723, gnl|fr1|chrUn (30823837-30823706) | |
| 592-723, gnl|galGal2|chrZ_random (11331745-11331873) | |
| 592-723, gnl|hg17|chr5 (39426300-39426431) | |
| 592-723, gnl|Hg17|chr5 (39426435-39426304) | |
| 592-723, gnl|loxAfr1|scaffold_6240 (60785-60916) | |
| 592-723, gnl|mm7|chr15 (6249363-6249232) | |
| 592-723, gnl|Mm7|chr15 (6249226-6249357) | |
| 592-723, gnl|monDom2|scaffold_20 (32163132-32163004) | |
| 592-723, gnl|oryCun1|scaffold_201173 (259863-259994) | |
| 592-723, gnl|panTro1|chr4 (77297896-77297765) | |
| 592-723, gnl|rheMac2|chr6 (39209239-39209370) | |
| 592-723, gnl|rn3|chr2 (55648778-55648647) | |
| 592-723, gnl|tetNig1|chrUn_random (2435028-2434897) | |
| 592-723, gnl|xenTro1|scaffold_469 (905803-905675) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-164, gnl|bosTau2|chr20 (21552261-21552098) | |
| 1-164, gnl|dasNov1|scaffold_61197 (7047-6828) | |
| 1-164, gnl|echTel1|scaffold_305719 (6828-7041) | |
| 1-164, gnl|galGal2|chrZ_random (11345867-11346114) | |
| 1-164, gnl|hg17|chr5 (39460583-39460807) | |
| 1-164, gnl|Hg17|chr5 (39460828-39460660) | |
| 1-164, gnl|mm7|chr15 (6214016-6213805) | |
| 1-164, gnl|Mm7|chr15 (6213782-6213927) | |
| 1-164, gnl|monDom2|scaffold_20 (32118594-32118385) | |
| 1-164, gnl|oryCun1|scaffold_201173 (301738-301974) | |
| 1-164, gnl|panTro1|chr4 (77263406-77263176) | |
| 1-164, gnl|rheMac2|chr6 (39243728-39243959) | |
| 1-164, gnl|rn3|chr2 (55612758-55612523) | |
| 338-497, gnl|bosTau2|chr10 (25927967-25928125) | |
| 338-497, gnl|Hg17|chr5 (39429246-39429109) | |
| 338-497, gnl|Mm7|chr15 (6245228-6245364) | |
| 592-723, gnl|bosTau2|chr20 (21512474-21512343) | |
| 592-723, gnl|canFam2|chr4 (72827970-72827839) | |
| 592-723, gnl|danRer3|chr5 (48164823-48164952) | |
| 592-723, gnl|dasNov1|scaffold_91848 (3127-2999) | |
| 592-723, gnl|echTel1|scaffold_313338 (35694-35563) | |
| 592-723, gnl|fr1|chrUn (30823837-30823706) | |
| 592-723, gnl|galGal2|chrZ_random (11331745-11331873) | |
| 592-723, gnl|hg17|chr5 (39426300-39426431) | |
| 592-723, gnl|Hg17|chr5 (39426435-39426304) | |
| 592-723, gnl|loxAfr1|scaffold_6240 (60785-60916) | |
| 592-723, gnl|mm7|chr15 (6249363-6249232) | |
| 592-723, gnl|Mm7|chr15 (6249226-6249357) | |
| 592-723, gnl|monDom2|scaffold_20 (32163132-32163004) | |
| 592-723, gnl|oryCun1|scaffold_201173 (259863-259994) | |
| 592-723, gnl|panTro1|chr4 (77297896-77297765) | |
| 592-723, gnl|rheMac2|chr6 (39209239-39209370) | |
| 592-723, gnl|rn3|chr2 (55648778-55648647) | |
| 592-723, gnl|tetNig1|chrUn_random (2435028-2434897) | |
| 592-723, gnl|xenTro1|scaffold_469 (905803-905675) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nje (0.66368) | |
| pla (0.401016) | |
| nco (0.161734) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.66368) | |
| pla (0.401016) | |
| nco (0.161734) | |
| jca (0.11396) | |
| eje (0.0988338) |