Ss1.1-Lng1-LNG010033H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGTGTAAATAAACATCCTGATTTTTCGATCACTGGCCAATGGGATGTTACCACTGAAA AGGATGGTCAAAAAGAATCAGTTGTCTTTGACGCTGTAATGATTTGTTCTGGACACCATG TGTATCCCAACCTACCAAAAGAATCCTTTCCAGGACTAAAACTTTTTAAAGGCAAATGCT TCCACAGCTGGGACTATAAAGAACCAGGACTATTCAAGGGGAAGCGAGTCCTAGTGATTG GCCTGGGGAATTCAGGCTGTGATATTGCTACGGAACTCAGTCACACAGCTGAACAGGTCA TCATCAGCTCCAGAAGTGGCTCCTGGGTGATGAGTCGGGTCTGGTATGATGGCTATCCAT GGGACGTGATGACTATCACACGATTTGAAACCTTCCTCAAGAACAACTTGCCAACAGTCA TCTCTGACTGGTGGTACACAAAGCAAATGAATGCAAGATTCAAGCACGAGAACTATGGCT TGATCCCTTTAAAAAGAGCCCTGAGGAAAGAGCCTGTGTTCAATGATGAGCTCCCAGCTT GCATTCTACGTGGCACCGTGTCCATTAAGCCAAATGTGAGGGAGTTCACAGAGACTTCAG CCATTTTTGAAGATGGGACAGTGTTTGAAGCCATTGACTGTGTCATTTTTGCAACAGGCT ATAGTTATGCCTATCCTTTCCTTGATGAATCCATCATTAAGAGCAGAAACAATGAGGTCA CCTTATTTAAAGACATCTTCCCACCTGTACTGGAGAAGCCAACCATGGCAGTCATTGGCT TTGTTCAGTCTCTTGGAGCTGCCATTCCCACAGCTGACCTGCAGGCCCGCTGGGCAGCAC GAGTAATAAAGGGAACTTGCACTTTGCCTTCTATCAAGGACATAATGCATGATATAGATG AAAAAATGGAGAAAAAGCTAAAATGGTTTGGCAAAAGCAATACCATACAGACAGATTATG TTGTTTATATGGATGAACTTGCCTCCTTCATTGGGGCAAAGCCCAACATTCCATGGCTGT TTCTCACAGATCCGAAGTTGGCCTTGGAAGTTTACTTCGGCCCTTGTAGCCCATACCAGT TTAGGCTGATTGGTCCTGGGAAGTGGCCAGGAGCCAGAAATGCCATCCTGACCCAGTGGG ACCGGATACTGAAACCCATTACAACAAGAGTTGTTGGGAGTCCTCTGAAGCCTTGCTTAT TCTGCAGTTGGTTCAGGCCTGTAGTTATTTCTGCTGTATCAATTGCTGTTTTGCTTGTGT TGTTCTAATCATCACTCTATCTAGGATTCTGAAAGTTACTAACACAAGTTTAAATCATTC CCTTTTCCTAACTGTTTAAGGTTGCAAAATAACATTCTGCTTTTAAGGACTTCTTACAAG ATATGAAGTAATTCCAAATGAAACAGAAGTTTTCTTGAAACCCTGTGGCCTAAATGGAAC CAAGTAAAGAAAAATTAAATATAGCATATAAATTTTATTTTGTTTGATGTTATAAATGCT AGTACACAAAATAAGCTGAAGAGCAAAATTGGTACAATTTCTGTTATTCTTCCTCATTTA ATTATTTAAGTTTTTGTAAATATTAATCAGCTCATGAAGGATATGATATTCCTCCTAAAC TTTTTTAGCAGTCTTAATAATACCCATCTATTTCCATACAAAACTGAATTATAACTACTC TTAATTATCTTGGTATGTAATAATAATGATTTTTCAATCATTCATTCATTTCTGCATATT TTACTCTGATAAGACTAAATGTATATATTTCAACTGACATACATAGTTTGAACATATGAA GCACATAAGATTTTTTTCACTTCCAGTATCATCAAGAAATTCTTACCAGTTCTTAAAAGT GCAGAGTCAGATATTAAAAATAAAAGCAAATGATTTTTTTTTTTGTACAGCTGCCATAGC TATGCTGACTAGGTATGAAGCTGACCTGCAGGATCTTGGGATTGTTGTTTCAGCTCTGTG TTGAGTCTGAGACACAGATATGCAGAAAATCTAAGGCACTCCCTGACATTGGGAAAAGCT ATGGAGGCAATAAGGTTAGATTTGAAGTTACTAGCTTTCTCTTTCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGTGTAAATAAACATCCTGATTTTTCGATCACTGGCCAATGGGATGTTACCACTGAAA AGGATGGTCAAAAAGAATCAGTTGTCTTTGACGCTGTAATGATTTGTTCTGGACACCATG TGTATCCCAACCTACCAAAAGAATCCTTTCCAGGACTAAAACTTTTTAAAGGCAAATGCT TCCACAGCTGGGACTATAAAGAACCAGGACTATTCAAGGGGAAGCGAGTCCTAGTGATTG GCCTGGGGAATTCAGGCTGTGATATTGCTACGGAACTCAGTCACACAGCTGAACAGGTCA TCATCAGCTCCAGAAGTGGCTCCTGGGTGATGAGTCGGGTCTGGTATGATGGCTATCCAT GGGACGTGATGACTATCACACGATTTGAAACCTTCCTCAAGAACAACTTGCCAACAGTCA TCTCTGACTGGTGGTACACAAAGCAAATGAATGCAAGATTCAAGCACGAGAACTATGGCT TGATCCCTTTAAAAAGAGCCCTGAGGAAAGAGCCTGTGTTCAATGATGAGCTCCCAGCTT GCATTCTACGTGGCACCGTGTCCATTAAGCCAAATGTGAGGGAGTTCACAGAGACTTCAG CCATTTTTGAAGATGGGACAGTGTTTGAAGCCATTGACTGTGTCATTTTTGCAACAGGCT ATAGTTATGCCTATCCTTTCCTTGATGAATCCATCATTAAGAGCAGAAACAATGAGGTCA CCTTATTTAAAGACATCTTCCCACCTGTACTGGAGAAGCCAACCATGGCAGTCATTGGCT TTGTTCAGTCTCTTGGAGCTGCCATTCCCACAGCTGACCTGCAGGCCCGCTGGGCAGCAC GAGTAATAAAGGGAACTTGCACTTTGCCTTCTATCAAGGACATAATGCATGATATAGATG AAAAAATGGAGAAAAAGCTAAAATGGTTTGGCAAAAGCAATACCATACAGACAGATTATG TTGTTTATATGGATGAACTTGCCTCCTTCATTGGGGCAAAGCCCAACATTCCATGGCTGT TTCTCACAGATCCGAAGTTGGCCTTGGAAGTTTACTTCGGCCCTTGTAGCCCATACCAGT TTAGGCTGATTGGTCCTGGGAAGTGGCCAGGAGCCAGAAATGCCATCCTGACCCAGTGGG ACCGGATACTGAAACCCATTACAACAAGAGTTGTTGGGAGTCCTCTGAAGCCTTGCTTAT TCTGCAGTTGGTTCAGGCCTGTAGTTATTTCTGCTGTATCAATTGCTGTTTTGCTTGTGT TGTTCTAATCATCACTCTATCTAGGATTCTGAAAGTTACTAACACAAGTTTAAATCATTC CCTTTTCCTAACTGTTTAAGGTTGCAAAATAACATTCTGCTTTTAAGGACTTCTTACAAG ATATGAAGTAATTCCAAATGAAACAGAAGTTTTCTTGAAACCCTGTGGCCTAAATGGAAC CAAGTAAAGAAAAATTAAATATAGCATATAAATTTTATTTTGTTTGATGTTATAAATGCT AGTACACAAAATAAGCTGAAGAGCAAAATTGGTACAATTTCTGTTATTCTTCCTCATTTA ATTATTTAAGTTTTTGTAAATATTAATCAGCTCATGAAGGATATGATATTCCTCCTAAAC TTTTTTAGCAGTCTTAATAATACCCATCTATTTCCATACAAAACTGAATTATAACTACTC TTAATTATCTTGGTATGTAATAATAATGATTTTTCAATCATTCATTCATTTCTGCATATT TTACTCTGATAAGACTAAATGTATATATTTCAACTGACATACATAGTTTGAACATATGAA GCACATAAGATTTTTTTCACTTCCAGTATCATCAAGAAATTCTTACCAGTTCTTAAAAGT GCAGAGTCAGATATTAAAAATAAAAGCAAATGATTTTTTTTTTTGTACAGCTGCCATAGC TATGCTGACTAGGTATGAAGCTGACCTGCAGGATCTTGGGATTGTTGTTTCAGCTCTGTG TTGAGTCTGAGACACAGATATGCAGAAAATCTAAGGCACTCCCTGACATTGGGAAAAGCT ATGGAGGCAATAAGGTTAGATTTGAAGTTACTAGCTTTCTCTTTCTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 618-737, + strand, RNAz p=0.618773 | |
| 964-1123, - strand, RNAz p=0.592526 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 618-737, + strand, RNAz p=0.618773 | |
| 964-1123, - strand, RNAz p=0.592526 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr16 (28135452-28135299) | |
| 1-154, gnl|Hg17|chr1 (167808484-167808637) | |
| 1-154, gnl|Mm7|chr1 (162928938-162928785) | |
| 295-496, gnl|bosTau2|chr16 (28133596-28133395) | |
| 295-496, gnl|Hg17|chr1 (167811595-167811796) | |
| 295-496, gnl|Mm7|chr1 (162925086-162924885) | |
| 499-853, gnl|bosTau2|chr16 (28128593-28128239) | |
| 499-853, gnl|Hg17|chr1 (167814807-167815161) | |
| 499-853, gnl|Mm7|chr1 (162919595-162919241) | |
| 925-1304, gnl|bosTau2|chr16 (28125036-28124657) | |
| 925-1304, gnl|Hg17|chr1 (167817897-167818277) | |
| 925-1304, gnl|Mm7|chr1 (162915532-162915146) | |
| 1344-1629, gnl|bosTau2|chr16 (28123211-28122920) | |
| 1344-1629, gnl|dasNov1|scaffold_10451 (54550-54312) | |
| 1344-1629, gnl|echTel1|scaffold_289410 (13625-13420) | |
| 1344-1629, gnl|hg17|chr1 (167819419-167819663) | |
| 1344-1629, gnl|loxAfr1|scaffold_160711 (1934-1721) | |
| 1344-1629, gnl|oryCun1|scaffold_215099 (132535-132333) | |
| 1344-1629, gnl|panTro1|chr1 (150101968-150102211) | |
| 1344-1629, gnl|rheMac2|chr1 (200812180-200812420) | |
| 1747-1863, gnl|bosTau2|chr16 (28122407-28122287) | |
| 1747-1863, gnl|Hg17|chr11 (45769501-45769619) | |
| 1967-2088, gnl|bosTau2|chr16 (28116107-28115986) | |
| 1967-2088, gnl|canFam2|chr7 (30681416-30680932) | |
| 1967-2088, gnl|dasNov1|scaffold_76233 (5201-4733) | |
| 1967-2088, gnl|echTel1|scaffold_271286 (10756-11215) | |
| 1967-2088, gnl|hg17|chr1 (167821855-167822311) | |
| 1967-2088, gnl|Hg17|chr1 (167822137-167822253) | |
| 1967-2088, gnl|mm7|chr1 (162908233-162907812) | |
| 1967-2088, gnl|monDom2|scaffold_16 (22284981-22285462) | |
| 1967-2088, gnl|oryCun1|scaffold_181687 (118818-119398) | |
| 1967-2088, gnl|panTro1|chr1 (150104417-150104889) | |
| 1967-2088, gnl|rheMac2|chr1 (200814623-200815096) | |
| 1967-2088, gnl|rn3|chr13 (78668638-78668224) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr16 (28135452-28135299) | |
| 1-154, gnl|Hg17|chr1 (167808484-167808637) | |
| 1-154, gnl|Mm7|chr1 (162928938-162928785) | |
| 295-496, gnl|bosTau2|chr16 (28133596-28133395) | |
| 295-496, gnl|Hg17|chr1 (167811595-167811796) | |
| 295-496, gnl|Mm7|chr1 (162925086-162924885) | |
| 499-853, gnl|bosTau2|chr16 (28128593-28128239) | |
| 499-853, gnl|Hg17|chr1 (167814807-167815161) | |
| 499-853, gnl|Mm7|chr1 (162919595-162919241) | |
| 925-1304, gnl|bosTau2|chr16 (28125036-28124657) | |
| 925-1304, gnl|Hg17|chr1 (167817897-167818277) | |
| 925-1304, gnl|Mm7|chr1 (162915532-162915146) | |
| 1344-1629, gnl|bosTau2|chr16 (28123211-28122920) | |
| 1344-1629, gnl|dasNov1|scaffold_10451 (54550-54312) | |
| 1344-1629, gnl|echTel1|scaffold_289410 (13625-13420) | |
| 1344-1629, gnl|hg17|chr1 (167819419-167819663) | |
| 1344-1629, gnl|loxAfr1|scaffold_160711 (1934-1721) | |
| 1344-1629, gnl|oryCun1|scaffold_215099 (132535-132333) | |
| 1344-1629, gnl|panTro1|chr1 (150101968-150102211) | |
| 1344-1629, gnl|rheMac2|chr1 (200812180-200812420) | |
| 1747-1863, gnl|bosTau2|chr16 (28122407-28122287) | |
| 1747-1863, gnl|Hg17|chr11 (45769501-45769619) | |
| 1967-2088, gnl|bosTau2|chr16 (28116107-28115986) | |
| 1967-2088, gnl|canFam2|chr7 (30681416-30680932) | |
| 1967-2088, gnl|dasNov1|scaffold_76233 (5201-4733) | |
| 1967-2088, gnl|echTel1|scaffold_271286 (10756-11215) | |
| 1967-2088, gnl|hg17|chr1 (167821855-167822311) | |
| 1967-2088, gnl|Hg17|chr1 (167822137-167822253) | |
| 1967-2088, gnl|mm7|chr1 (162908233-162907812) | |
| 1967-2088, gnl|monDom2|scaffold_16 (22284981-22285462) | |
| 1967-2088, gnl|oryCun1|scaffold_181687 (118818-119398) | |
| 1967-2088, gnl|panTro1|chr1 (150104417-150104889) | |
| 1967-2088, gnl|rheMac2|chr1 (200814623-200815096) | |
| 1967-2088, gnl|rn3|chr13 (78668638-78668224) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| clu (1.19646) | |
| kid (0.648677) | |
| lun (0.601956) | |
| cki (0.495704) | |
| liv (0.438853) | |
| tra (0.246184) | |
| cli (0.152812) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.19646) | |
| kid (0.648677) | |
| lun (0.601956) | |
| cki (0.495704) | |
| liv (0.438853) | |
| tra (0.246184) | |
| cli (0.152812) |