Non-Coding RNA Search

Ss1.1-Lng1-LNG010034A04.5

Sequence:


               
               CTTTAAGGAACAGGTCTCTAAGCCCTTGGACAGTGCAGCCCTGTGAGGGCTAAGACCCCG
CTGCCCTGGTCAGTGGTAAAAGGGGGGAGGTGTCTTCAGCTCCCCTCCTCCTCCTCCCAC
CGTCAGACCTGCCCTGCCAGCTGCCTTCCTGGGCAACTGTATCCTCAGGCTTGACCCCAA
ACCATGACAGATTAGCTTGGAAAACAACTCCAGTGGACTCAGGGGCATGACCAACACCCA
GATAGAGCCCAGGTAGGGATGTGAGGAGAAGGGCCTGCATCACCTTCCTCCACATCAGCC
CCCTTTTCTAGAGGTGTTTTAAAGCAAGTTCCTGTACTGATGATTATGCCTGTTTTTCTC
TATTGACTTCACAGTCAAAGCCGCATTTATAACCTGCTCGTCTCGGCACCCGCCGTCAGC
ATTCAGTATTGCTTCTGTGTCTCTAATTTTGATTGTGTGGGATAAGAACCATTTATGTTA
TTTAGTGCTATGGGGTAGAAGCCGTCTTGGAAATTAATCACAAGGTTCTGTGTCCTGACG
TTTTTCCATTGCGTTTTAATTTCGCGTAACACATTTCAGTTCTACAGTAACTTAACTCAT
TGTTAACGTGATAGCCTAATTTTACAGATATATTCTGTAAGCCCCTGGGGAGGGTGACAT
TTGGAGGTGACAAGGAGGACACAGTAGGAATCGTCTAAGTGGGGCGCCCCGCTCCGCATG
AGTCTATCCTCGAAGTCGGGGGACTGCAGAGCCACACTCGCTTGTTTCAGCTAAGAGTGT
ACCCGCTCGCAACAGTGCAGCGATGCACACAGAACCAAGGTGGATCTACGAAGCAATGGC
CCCGCCACTCGGTACATCACTTTGCCCGGAGAAAATCCCAGTGTGCTGGGCATGTTTGCT
TCTGCACCCAAACAAACATTCATTGAAATTTCCTCCAGGAATTCCTTCTGAAGTATCATT
ACCGTGATCAGTTATTGATCAGTGATCCCCCTGGCTCAGCTCCCGGCGCTTGGCTGTGTC
CTCCTGTGGTCTCCACGCCTTCAGTGTCCGCTGTTTTCAAGTCAGGCAGGATTCAATGAG
AACGTTATGCCCTGTGCTGGTGGCGATTTTGCTGCGTCCTCTGTATAAGTGAAACATTTG
TAAATTATGTCGATGTATTTAATGGTGTTTGCCTTCTGGTGATTGTATTCCAATTTGATT
TTGTGATGAACTTTTGCTTTTTATATATTTCTTCCTTTGGATGACTTTATTAAACATTTT
AACAGACAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTAAGGAACAGGTCTCTAAGCCCTTGGACAGTGCAGCCCTGTGAGGGCTAAGACCCCG
CTGCCCTGGTCAGTGGTAAAAGGGGGGAGGTGTCTTCAGCTCCCCTCCTCCTCCTCCCAC
CGTCAGACCTGCCCTGCCAGCTGCCTTCCTGGGCAACTGTATCCTCAGGCTTGACCCCAA
ACCATGACAGATTAGCTTGGAAAACAACTCCAGTGGACTCAGGGGCATGACCAACACCCA
GATAGAGCCCAGGTAGGGATGTGAGGAGAAGGGCCTGCATCACCTTCCTCCACATCAGCC
CCCTTTTCTAGAGGTGTTTTAAAGCAAGTTCCTGTACTGATGATTATGCCTGTTTTTCTC
TATTGACTTCACAGTCAAAGCCGCATTTATAACCTGCTCGTCTCGGCACCCGCCGTCAGC
ATTCAGTATTGCTTCTGTGTCTCTAATTTTGATTGTGTGGGATAAGAACCATTTATGTTA
TTTAGTGCTATGGGGTAGAAGCCGTCTTGGAAATTAATCACAAGGTTCTGTGTCCTGACG
TTTTTCCATTGCGTTTTAATTTCGCGTAACACATTTCAGTTCTACAGTAACTTAACTCAT
TGTTAACGTGATAGCCTAATTTTACAGATATATTCTGTAAGCCCCTGGGGAGGGTGACAT
TTGGAGGTGACAAGGAGGACACAGTAGGAATCGTCTAAGTGGGGCGCCCCGCTCCGCATG
AGTCTATCCTCGAAGTCGGGGGACTGCAGAGCCACACTCGCTTGTTTCAGCTAAGAGTGT
ACCCGCTCGCAACAGTGCAGCGATGCACACAGAACCAAGGTGGATCTACGAAGCAATGGC
CCCGCCACTCGGTACATCACTTTGCCCGGAGAAAATCCCAGTGTGCTGGGCATGTTTGCT
TCTGCACCCAAACAAACATTCATTGAAATTTCCTCCAGGAATTCCTTCTGAAGTATCATT
ACCGTGATCAGTTATTGATCAGTGATCCCCCTGGCTCAGCTCCCGGCGCTTGGCTGTGTC
CTCCTGTGGTCTCCACGCCTTCAGTGTCCGCTGTTTTCAAGTCAGGCAGGATTCAATGAG
AACGTTATGCCCTGTGCTGGTGGCGATTTTGCTGCGTCCTCTGTATAAGTGAAACATTTG
TAAATTATGTCGATGTATTTAATGGTGTTTGCCTTCTGGTGATTGTATTCCAATTTGATT
TTGTGATGAACTTTTGCTTTTTATATATTTCTTCCTTTGGATGACTTTATTAAACATTTT
AACAGACAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               835-988, - strand, RNAz p=0.997388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               835-988, - strand, RNAz p=0.997388

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               156-1270, gnl|bosTau2|chr24 (1541037-1542123)
               

               
               156-1270, gnl|Hg17|chr18 (72854944-72853727)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-1270, gnl|bosTau2|chr24 (1541037-1542123)
               

               
               156-1270, gnl|Hg17|chr18 (72854944-72853727)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.239234)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	156-1270, gnl\|bosTau2\|chr24 (1541037-1542123)
	156-1270, gnl\|Hg17\|chr18 (72854944-72853727)

	cbe (0.239234)
	fli (0.202881)
	sag (0.182715)
	cly (0.120642)
	jca (0.11396)