Ss1.1-Lng1-LNG010034A07.5
|
TTTTTTTTTTTTTGCCAAGGTATCTTTTTATTTTCCCATCCGGTGCTACTTCTAAGGTCA
CACTTACCAATTCGAGTTATTCTTCCCATGACAGAACACTTTCCTGCTTACCGACTCTGA
GAAAGAATTGGTGGATGAACAGAAAACCAACCCTCTTAGACATACACAGAGTTTCTAAAA
CGGTACCTGAAAGTCTCATTCCTGCCCCTCTCTAGGGAGCATCCTGTCACTCTACTCACT
CTTCCACGAGAACACATCTTCCCGTGTCCAACTGGATCACTCCCTTAAAACACGGCGTTA
TGTTCAAGCAGCAGAAACATGAACGGTGATTTCTACTGACCATTTTTGCATCTGCTTATT
GCAGTACCAGCTAAAACACCAGTGGATAAGTTCTTGACACGTTCCAGAGTTCAACAAATG
CATGATTCCTGTCCTCCGACGGACGTGGTAAGTCAACACTTCACTGGAGAAAAATGTATG
CGATTGCAGCATTAATTTCTGAAATGAAGGCTGGAAATTCTTCTTCCCAACTCTCCCCTC
AGTCTGTCGCTATTCCGCATGGTCTTGCTCTTGTCCCGGAATTAGCCACCGAATACTCTC
CGTTCGAATGGTAGCGTACATAATAAAACTAATTAAAAAGAATAAGGAAAATACGAGCAG
CCAGTCCACACTTTTTATCAAAGTGCTGGGAAGAGGGCCTATGTGGTCAGCTTGAGTTAC
CACCACATTTTTCTTGGCTTCTATGCCCGTCTGGTTAAAAATGAAGATCTTCAGCGTTTC
CAGTGTTCGGTCTGTGTGGTTAAATCTAGCCATTGGTTTAGCACCTTGAAATAACAAGAT
GTTGGGAACGGCTACGGTGCCAAACCGCGTAGAGAGGCTGCTGTGCTGAGATGCATCCAG
TGCCAAAAAATGAAGAGCTGGAAAGGCCCGGGGTAGAGAATTAAAATGAGGGGCCAAACT
GGCGGAAAATCGGCACCAAGGGGTGTAAAACAGGACTAGCGTGCAGTCACTACCGTTGGG
GTTGAGAAAATCCATAAGGTCCTGTGACACATTCAAAATTTTCAGAGTGAAGTTTTCCAA
GCCCGACACATTCCGCTCCTCGCAGGTGACCTTGGGCGGTTTCAGGCTCTCGGTGGCGTT
GGCGTCCTCCGCGGGGGCGGGGTCGGAGTCCGCCACTTCGGGCTCCGTGTAGTACTCCTC
CTCCCTCTCGGGGAAGCTTCCAGAGCTGTCCAGAGAGAAGAGGCTCTCCCGGAGATGGCA
CCTCGAGTCCTCCTGCCCTCCGGCCCCGCAGGTGCCGCCGCCGCCGGGCTCCGGGCTCAG
GTTGTCCTCGGCTTCCCCGGGAATCACCGACAACATCACCACGCGGTCGCCATCGGCTTC
CAGCCCCAGCACAGCGGCCTCTTCTGCGGCCGCGTCCGGGCCCGCCGGGTCCCCTGCCGG
CTCCTCCTCACCCAGGTACACAGCCCCGACCTGGAAAGGGTACGCGGGCTGCTCCTCTGA
CCATCTGCTCTCTGCAACTTCCTGGCCGCGGGCCGGAGGCCCCAGCACCCATAGGAGTAC
CTGCCACCAGCCAAGGAGTCGCATGGTGCGGGGCGGGCGGCGGCCGCACCACCCAGGCCG
AAGGGCAAACGGCGCACGGCCGCGCGAGGCGCGCTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTGCCAAGGTATCTTTTTATTTTCCCATCCGGTGCTACTTCTAAGGTCA
CACTTACCAATTCGAGTTATTCTTCCCATGACAGAACACTTTCCTGCTTACCGACTCTGA
GAAAGAATTGGTGGATGAACAGAAAACCAACCCTCTTAGACATACACAGAGTTTCTAAAA
CGGTACCTGAAAGTCTCATTCCTGCCCCTCTCTAGGGAGCATCCTGTCACTCTACTCACT
CTTCCACGAGAACACATCTTCCCGTGTCCAACTGGATCACTCCCTTAAAACACGGCGTTA
TGTTCAAGCAGCAGAAACATGAACGGTGATTTCTACTGACCATTTTTGCATCTGCTTATT
GCAGTACCAGCTAAAACACCAGTGGATAAGTTCTTGACACGTTCCAGAGTTCAACAAATG
CATGATTCCTGTCCTCCGACGGACGTGGTAAGTCAACACTTCACTGGAGAAAAATGTATG
CGATTGCAGCATTAATTTCTGAAATGAAGGCTGGAAATTCTTCTTCCCAACTCTCCCCTC
AGTCTGTCGCTATTCCGCATGGTCTTGCTCTTGTCCCGGAATTAGCCACCGAATACTCTC
CGTTCGAATGGTAGCGTACATAATAAAACTAATTAAAAAGAATAAGGAAAATACGAGCAG
CCAGTCCACACTTTTTATCAAAGTGCTGGGAAGAGGGCCTATGTGGTCAGCTTGAGTTAC
CACCACATTTTTCTTGGCTTCTATGCCCGTCTGGTTAAAAATGAAGATCTTCAGCGTTTC
CAGTGTTCGGTCTGTGTGGTTAAATCTAGCCATTGGTTTAGCACCTTGAAATAACAAGAT
GTTGGGAACGGCTACGGTGCCAAACCGCGTAGAGAGGCTGCTGTGCTGAGATGCATCCAG
TGCCAAAAAATGAAGAGCTGGAAAGGCCCGGGGTAGAGAATTAAAATGAGGGGCCAAACT
GGCGGAAAATCGGCACCAAGGGGTGTAAAACAGGACTAGCGTGCAGTCACTACCGTTGGG
GTTGAGAAAATCCATAAGGTCCTGTGACACATTCAAAATTTTCAGAGTGAAGTTTTCCAA
GCCCGACACATTCCGCTCCTCGCAGGTGACCTTGGGCGGTTTCAGGCTCTCGGTGGCGTT
GGCGTCCTCCGCGGGGGCGGGGTCGGAGTCCGCCACTTCGGGCTCCGTGTAGTACTCCTC
CTCCCTCTCGGGGAAGCTTCCAGAGCTGTCCAGAGAGAAGAGGCTCTCCCGGAGATGGCA
CCTCGAGTCCTCCTGCCCTCCGGCCCCGCAGGTGCCGCCGCCGCCGGGCTCCGGGCTCAG
GTTGTCCTCGGCTTCCCCGGGAATCACCGACAACATCACCACGCGGTCGCCATCGGCTTC
CAGCCCCAGCACAGCGGCCTCTTCTGCGGCCGCGTCCGGGCCCGCCGGGTCCCCTGCCGG
CTCCTCCTCACCCAGGTACACAGCCCCGACCTGGAAAGGGTACGCGGGCTGCTCCTCTGA
CCATCTGCTCTCTGCAACTTCCTGGCCGCGGGCCGGAGGCCCCAGCACCCATAGGAGTAC
CTGCCACCAGCCAAGGAGTCGCATGGTGCGGGGCGGGCGGCGGCCGCACCACCCAGGCCG
AAGGGCAAACGGCGCACGGCCGCGCGAGGCGCGCTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
24-747, gnl|bosTau2|chr7 (32253919-32254635) |
|
24-747, gnl|Hg17|chr5 (134263782-134263077) |
| |
|
1041-1504, gnl|bosTau2|chr7 (32262209-32262675) |
|
1041-1504, gnl|Hg17|chr5 (134251772-134251306) |
|
1041-1504, gnl|Mm7|chr13 (54806179-54805725) |
| |
|
1520-1656, gnl|bosTau2|chr7 (32269391-32269527) |
|
1520-1656, gnl|canFam2|chr11 (25955964-25956312) |
|
1520-1656, gnl|dasNov1|scaffold_35940 (48679-49013) |
|
1520-1656, gnl|echTel1|scaffold_152157 (4-271) |
|
1520-1656, gnl|hg17|chr5 (134237970-134238282) |
|
1520-1656, gnl|Hg17|chr5 (134238117-134237970) |
|
1520-1656, gnl|loxAfr1|scaffold_5810 (21202-21543) |
|
1520-1656, gnl|mm7|chr13 (54802613-54802817) |
|
1520-1656, gnl|Mm7|chr13 (54802753-54802613) |
|
1520-1656, gnl|panTro1|chr4 (140592389-140592701) |
|
1520-1656, gnl|rheMac2|chr6 (131303893-131304205) |
|
1520-1656, gnl|rn3|chr17 (14950850-14950645) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
24-747, gnl|bosTau2|chr7 (32253919-32254635) |
|
24-747, gnl|Hg17|chr5 (134263782-134263077) |
| |
|
1041-1504, gnl|bosTau2|chr7 (32262209-32262675) |
|
1041-1504, gnl|Hg17|chr5 (134251772-134251306) |
|
1041-1504, gnl|Mm7|chr13 (54806179-54805725) |
| |
|
1520-1656, gnl|bosTau2|chr7 (32269391-32269527) |
|
1520-1656, gnl|canFam2|chr11 (25955964-25956312) |
|
1520-1656, gnl|dasNov1|scaffold_35940 (48679-49013) |
|
1520-1656, gnl|echTel1|scaffold_152157 (4-271) |
|
1520-1656, gnl|hg17|chr5 (134237970-134238282) |
|
1520-1656, gnl|Hg17|chr5 (134238117-134237970) |
|
1520-1656, gnl|loxAfr1|scaffold_5810 (21202-21543) |
|
1520-1656, gnl|mm7|chr13 (54802613-54802817) |
|
1520-1656, gnl|Mm7|chr13 (54802753-54802613) |
|
1520-1656, gnl|panTro1|chr4 (140592389-140592701) |
|
1520-1656, gnl|rheMac2|chr6 (131303893-131304205) |
|
1520-1656, gnl|rn3|chr17 (14950850-14950645) |
|
vin (0.997672) |
|
cmu (0.745573) |
|
bfe (0.449573) |
|
hyp (0.42851) |
|
sag (0.36543) |
|
sto (0.359648) |
|
gul (0.355177) |
|
ebs (0.354904) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
isp (0.300752) |
|
cte (0.29274) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ste (0.270416) |
|
sug (0.254582) |
|
bla (0.248694) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
cki (0.165235) |
|
fco (0.157208) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
eru (0.120048) |
|
med (0.116252) |
|
spc (0.113366) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
vin (0.997672) |
|
cmu (0.745573) |
|
bfe (0.449573) |
|
hyp (0.42851) |
|
sag (0.36543) |
|
sto (0.359648) |
|
gul (0.355177) |
|
ebs (0.354904) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
isp (0.300752) |
|
cte (0.29274) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ste (0.270416) |
|
sug (0.254582) |
|
bla (0.248694) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
cki (0.165235) |
|
fco (0.157208) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
eru (0.120048) |
|
med (0.116252) |
|
spc (0.113366) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
