Non-Coding RNA Search

Ss1.1-Lng1-LNG010034C04.5

Sequence:


               
               ACAGTAAGGTTTTTCTGGTTCCCTGTTCCCTTTCACAGCATTTAAAATCACTGGAATATT
TAGATCTCAGTGAAAATTTAATGTCTGAAGAATACTTGAAAAACTCAGCCTGTGAGCATG
CCTGGCCCTTCCTACACACTTTAATTTTAAGGCAAAATCATTTGAAATCATTAGAAAAAA
CTGGAGAAGTTTTGGTTACTCTGAAAAACCTGACTAACCTTGATATCAGTAAGAATAATT
TTGATTCCATGCCGGAAACTTGCCAGTGGCCGGAAAAGATGAAATATTTGAACTTATCCA
GCACGAGAATACACAGTTTAACCCATTGTCTTCCCCAGACCCTGGAAGTTTTAGATATTA
GCAATAACAATCTCAACTCGTTTTCTTTGAGTCTGCCACAACTCAAAGAACTTTATATTT
CCAGAAATAAGTTGAAGACGCTCCCAGATGCCTCCTTTCTACCCATGTTGTCAGTTCTGA
GAATCAGCAGAAATACGATCAATACTTTCTCTAAGGAGCAACTTGATTCTTTTCAAAAGC
TGAAGACTTTGGAAGCTGGAGGCAACAACTTCATCTGCTCCTGTGACTTCCTGTCCTTCA
CTCAGGGGCAGCAGGCGCTGGCCCAGGTGCTGAGCGACTGGCCGGAGAACTACCTGTGTG
ACTCTCCATCCCACGTGCGGGGCCAGCGGGTCCAGGACACCCGCCTCTCGCTCACTGAGT
GCCACAGGGTGGCCGTGGTGTCCGTCGTGTGCTGTGCCCTCTTCCTGCTGCTCCTGCTCA
CGGGGGCTCTGTGCCACCACTTCCACGGACTGTGGTACATGAAGATGATGTGGGCCTGGC
TCCAGGCCAAGAGGAAGCCGCGGAAAGCTCCCCGCAGGGACGTGTGCTATGACGCTTTCG
TGTCCTACAGTGAGCAGGACTCCTACTGGGTGGAGAACCTCATGGTCCAGGAGCTGGAGC
ACTTCCAGCCTCCCTTTAAGTTGTGTCTTCATAAGCGCGACTTCATTCCAGGCAAGTGGA
TTATTGACAACATCATCGACTCCATCGAAAAGAGCCAGAAAACCATCTTCGTGCTTTCCG
AGAACTTTGTGAAGAGCGAGTGGTGCAAGTACGAGCTGGACTTCTCCCACTTCCGTCTCT
TTGATGAGAACGATGACACCGCCATCCTCATTCTGCTGGAACCCATCGAGAAGAAGGCCA
TTCCCCAGCGTTTCTGTAAGCTGCGGAAGATAATGAACACCAGGACCTACCTGGAGTGGC
CCGCGGATGAGACGCAGCGGGAAGGGTTTTGGTTAAATTTGAGAGCTGCGATCAAGTCCT
AGGTTCCTTCGTGAAAGGCCAGTCTTGGTCCGATGCTGGTCTTTATCGCTCTAGGTGGAA
CCAAGTCTCTTCTAACACAAGAACATGAATAACATAAAGGGTGACTTGCTGACTCAAACT
ACTCCAACCCTTCCGGTTTGATCTAGAGGGCTGTTTTATAAAAACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTAAGGTTTTTCTGGTTCCCTGTTCCCTTTCACAGCATTTAAAATCACTGGAATATT
TAGATCTCAGTGAAAATTTAATGTCTGAAGAATACTTGAAAAACTCAGCCTGTGAGCATG
CCTGGCCCTTCCTACACACTTTAATTTTAAGGCAAAATCATTTGAAATCATTAGAAAAAA
CTGGAGAAGTTTTGGTTACTCTGAAAAACCTGACTAACCTTGATATCAGTAAGAATAATT
TTGATTCCATGCCGGAAACTTGCCAGTGGCCGGAAAAGATGAAATATTTGAACTTATCCA
GCACGAGAATACACAGTTTAACCCATTGTCTTCCCCAGACCCTGGAAGTTTTAGATATTA
GCAATAACAATCTCAACTCGTTTTCTTTGAGTCTGCCACAACTCAAAGAACTTTATATTT
CCAGAAATAAGTTGAAGACGCTCCCAGATGCCTCCTTTCTACCCATGTTGTCAGTTCTGA
GAATCAGCAGAAATACGATCAATACTTTCTCTAAGGAGCAACTTGATTCTTTTCAAAAGC
TGAAGACTTTGGAAGCTGGAGGCAACAACTTCATCTGCTCCTGTGACTTCCTGTCCTTCA
CTCAGGGGCAGCAGGCGCTGGCCCAGGTGCTGAGCGACTGGCCGGAGAACTACCTGTGTG
ACTCTCCATCCCACGTGCGGGGCCAGCGGGTCCAGGACACCCGCCTCTCGCTCACTGAGT
GCCACAGGGTGGCCGTGGTGTCCGTCGTGTGCTGTGCCCTCTTCCTGCTGCTCCTGCTCA
CGGGGGCTCTGTGCCACCACTTCCACGGACTGTGGTACATGAAGATGATGTGGGCCTGGC
TCCAGGCCAAGAGGAAGCCGCGGAAAGCTCCCCGCAGGGACGTGTGCTATGACGCTTTCG
TGTCCTACAGTGAGCAGGACTCCTACTGGGTGGAGAACCTCATGGTCCAGGAGCTGGAGC
ACTTCCAGCCTCCCTTTAAGTTGTGTCTTCATAAGCGCGACTTCATTCCAGGCAAGTGGA
TTATTGACAACATCATCGACTCCATCGAAAAGAGCCAGAAAACCATCTTCGTGCTTTCCG
AGAACTTTGTGAAGAGCGAGTGGTGCAAGTACGAGCTGGACTTCTCCCACTTCCGTCTCT
TTGATGAGAACGATGACACCGCCATCCTCATTCTGCTGGAACCCATCGAGAAGAAGGCCA
TTCCCCAGCGTTTCTGTAAGCTGCGGAAGATAATGAACACCAGGACCTACCTGGAGTGGC
CCGCGGATGAGACGCAGCGGGAAGGGTTTTGGTTAAATTTGAGAGCTGCGATCAAGTCCT
AGGTTCCTTCGTGAAAGGCCAGTCTTGGTCCGATGCTGGTCTTTATCGCTCTAGGTGGAA
CCAAGTCTCTTCTAACACAAGAACATGAATAACATAAAGGGTGACTTGCTGACTCAAACT
ACTCCAACCCTTCCGGTTTGATCTAGAGGGCTGTTTTATAAAAACCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5DX22_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5DX22_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               320-439, - strand, RNAz p=0.551954
               

               
               760-959, + strand, RNAz p=0.970398

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-439, - strand, RNAz p=0.551954
               

               
               760-959, + strand, RNAz p=0.970398

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1415, gnl|bosTau2|chr17 (1629776-1631190)
               

               
               1-1415, gnl|Hg17|chr4 (154982698-154984112)
               

               
               1-1415, gnl|Mm7|chr3 (83942792-83941405)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1415, gnl|bosTau2|chr17 (1629776-1631190)
               

               
               1-1415, gnl|Hg17|chr4 (154982698-154984112)
               

               
               1-1415, gnl|Mm7|chr3 (83942792-83941405)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	320-439, - strand, RNAz p=0.551954
	760-959, + strand, RNAz p=0.970398

	1-1415, gnl\|bosTau2\|chr17 (1629776-1631190)
	1-1415, gnl\|Hg17\|chr4 (154982698-154984112)
	1-1415, gnl\|Mm7\|chr3 (83942792-83941405)