Ss1.1-Lng1-LNG010034F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACAGGCGGGCGCGGTGTCTGCGCGCGGGTTTCGTAGTGTCGCAGCTGTTTGCGGGAGT GGTTCTTGTTGGCGCCATGGACTCTGGTCTTATCCGGCGCTTAGCCCCGCGCCTGGGCAT TGCCGAGCCGGAGGTGCTGAGGAAAGCAGAGGAGTACTTGCGACTGTCCCACGTGAAGTG TATTGGCCTGTCTGCACATACCACAGAAACCAGCAATGCAGTCATGTGCCTGGACCTTGC AGCTTCCTGCATGAAGTGCCCCTTGGACAGGGCTTATTTAATTAAACTTTCTGGTTTGAA CAAGAAGATGTATCAGAACTGTCTTAAATCTTTTGAGTATTTACTTGGCCTGAACTCAAA TATTGGAATAAGAGACCTAGCTGTACAGTTTAGCTGTACGGAAGCAGTGAACATGGCTTC AAAGATACTGCAAAGCTATGAGTCCAGTCTTCCACAGACACAGCACGTGGATCTCGACTT ATCCAGACCGCTTTTCACCACTGCTGCATTACTTTCAGCATGCAAGATTCTAAAGCTGAA GGTGGACAAAAATAAAATGACAGCCACATCTGGTGTAAAAAAAGCCATATTTGATCGACT CTGTAAACAATTAGAGAAGATTGGGCAGCAGATCGACAGAGAGCCTGAAGATTCAGCCAC TCCCCCACGGAAGAAAAAGAAGACAGTGGTTGAACCTCCAGCAAAGGAAACAGAGAATAT AGTAGAGATCCCACATAAATCACAAAAAGACGAAGATGTGACACAGGATTATGAAGAATG GAAAAGGAAAATCTTGGAAAATGCTGCCAAAGCACAAAAGGCTACAACAGAGTAATTTCA GCTTCCAGGCTACCTTGTACGGCAAACCGAATGCATCTGCCACCTCAAGGAACATGTGGA GGGCTTTGGAATTTTCTTTGAACTTTTAGAACAAGGATCCTAAGACTCTTGCCTTAATAG CAAAGAAGCCAGCATTAGGGCTGAGCAGGCTGGTTCTGAAATGAGCAACAAATTCATTAG CTCAGCTGCAGTGCCTGGTTAGGTTAGCCTTGGCTCCGCACAGGTCTGTGCTCTCCTACA AAATGTAATGGGAGCCATTTTGCTTTTTTGCTTTGTTTTAAGCCAAAGATAGTTTGCTGT CCTATCCAGAATGTGAAATTCAGTCTGAGTGGAGTCTTAAAGATTTTACTTAAGTTTTTG TGTAAATCTCTTGGTTTGACTAAATCAATATATGGTACAACCTAAGTTAATAAATGTTAT TTTTATATGCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACAGGCGGGCGCGGTGTCTGCGCGCGGGTTTCGTAGTGTCGCAGCTGTTTGCGGGAGT GGTTCTTGTTGGCGCCATGGACTCTGGTCTTATCCGGCGCTTAGCCCCGCGCCTGGGCAT TGCCGAGCCGGAGGTGCTGAGGAAAGCAGAGGAGTACTTGCGACTGTCCCACGTGAAGTG TATTGGCCTGTCTGCACATACCACAGAAACCAGCAATGCAGTCATGTGCCTGGACCTTGC AGCTTCCTGCATGAAGTGCCCCTTGGACAGGGCTTATTTAATTAAACTTTCTGGTTTGAA CAAGAAGATGTATCAGAACTGTCTTAAATCTTTTGAGTATTTACTTGGCCTGAACTCAAA TATTGGAATAAGAGACCTAGCTGTACAGTTTAGCTGTACGGAAGCAGTGAACATGGCTTC AAAGATACTGCAAAGCTATGAGTCCAGTCTTCCACAGACACAGCACGTGGATCTCGACTT ATCCAGACCGCTTTTCACCACTGCTGCATTACTTTCAGCATGCAAGATTCTAAAGCTGAA GGTGGACAAAAATAAAATGACAGCCACATCTGGTGTAAAAAAAGCCATATTTGATCGACT CTGTAAACAATTAGAGAAGATTGGGCAGCAGATCGACAGAGAGCCTGAAGATTCAGCCAC TCCCCCACGGAAGAAAAAGAAGACAGTGGTTGAACCTCCAGCAAAGGAAACAGAGAATAT AGTAGAGATCCCACATAAATCACAAAAAGACGAAGATGTGACACAGGATTATGAAGAATG GAAAAGGAAAATCTTGGAAAATGCTGCCAAAGCACAAAAGGCTACAACAGAGTAATTTCA GCTTCCAGGCTACCTTGTACGGCAAACCGAATGCATCTGCCACCTCAAGGAACATGTGGA GGGCTTTGGAATTTTCTTTGAACTTTTAGAACAAGGATCCTAAGACTCTTGCCTTAATAG CAAAGAAGCCAGCATTAGGGCTGAGCAGGCTGGTTCTGAAATGAGCAACAAATTCATTAG CTCAGCTGCAGTGCCTGGTTAGGTTAGCCTTGGCTCCGCACAGGTCTGTGCTCTCCTACA AAATGTAATGGGAGCCATTTTGCTTTTTTGCTTTGTTTTAAGCCAAAGATAGTTTGCTGT CCTATCCAGAATGTGAAATTCAGTCTGAGTGGAGTCTTAAAGATTTTACTTAAGTTTTTG TGTAAATCTCTTGGTTTGACTAAATCAATATATGGTACAACCTAAGTTAATAAATGTTAT TTTTATATGCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 310-442, - strand, RNAz p=0.873161 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 310-442, - strand, RNAz p=0.873161 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-142, gnl|bosTau2|chr18 (16190247-16190112) | |
| 3-142, gnl|Hg17|chr16 (45281040-45281184) | |
| 3-142, gnl|Mm7|chr8 (83890592-83890704) | |
| 271-442, gnl|bosTau2|chr18 (16187180-16187009) | |
| 271-442, gnl|Hg17|chr16 (45283794-45283965) | |
| 271-442, gnl|Mm7|chr8 (83893506-83893675) | |
| 521-643, gnl|bosTau2|chr18 (16185460-16185338) | |
| 521-643, gnl|canFam2|chr15 (11434230-11434102) | |
| 521-643, gnl|danRer3|chr7 (35627460-35627341) | |
| 521-643, gnl|dasNov1|scaffold_66317 (5437-5565) | |
| 521-643, gnl|echTel1|scaffold_55075 (3349-3223) | |
| 521-643, gnl|galGal2|chr11 (8020264-8020136) | |
| 521-643, gnl|hg17|chr16 (45286965-45287093) | |
| 521-643, gnl|Hg17|chr16 (45286970-45287092) | |
| 521-643, gnl|loxAfr1|scaffold_7310 (57134-57262) | |
| 521-643, gnl|mm7|chr8 (83895910-83896038) | |
| 521-643, gnl|Mm7|chr8 (83895915-83896037) | |
| 521-643, gnl|monDom2|scaffold_35 (10696487-10696615) | |
| 521-643, gnl|panTro1|chrUn_random (9054077-9054205) | |
| 521-643, gnl|rheMac2|chr20 (44891647-44891775) | |
| 521-643, gnl|rn3|chr19 (23124692-23124564) | |
| 521-643, gnl|xenTro1|scaffold_555 (158027-158150) | |
| 1012-1279, gnl|bosTau2|chr11 (35992900-35992637) | |
| 1012-1279, gnl|Hg17|chrX (33052738-33053003) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-142, gnl|bosTau2|chr18 (16190247-16190112) | |
| 3-142, gnl|Hg17|chr16 (45281040-45281184) | |
| 3-142, gnl|Mm7|chr8 (83890592-83890704) | |
| 271-442, gnl|bosTau2|chr18 (16187180-16187009) | |
| 271-442, gnl|Hg17|chr16 (45283794-45283965) | |
| 271-442, gnl|Mm7|chr8 (83893506-83893675) | |
| 521-643, gnl|bosTau2|chr18 (16185460-16185338) | |
| 521-643, gnl|canFam2|chr15 (11434230-11434102) | |
| 521-643, gnl|danRer3|chr7 (35627460-35627341) | |
| 521-643, gnl|dasNov1|scaffold_66317 (5437-5565) | |
| 521-643, gnl|echTel1|scaffold_55075 (3349-3223) | |
| 521-643, gnl|galGal2|chr11 (8020264-8020136) | |
| 521-643, gnl|hg17|chr16 (45286965-45287093) | |
| 521-643, gnl|Hg17|chr16 (45286970-45287092) | |
| 521-643, gnl|loxAfr1|scaffold_7310 (57134-57262) | |
| 521-643, gnl|mm7|chr8 (83895910-83896038) | |
| 521-643, gnl|Mm7|chr8 (83895915-83896037) | |
| 521-643, gnl|monDom2|scaffold_35 (10696487-10696615) | |
| 521-643, gnl|panTro1|chrUn_random (9054077-9054205) | |
| 521-643, gnl|rheMac2|chr20 (44891647-44891775) | |
| 521-643, gnl|rn3|chr19 (23124692-23124564) | |
| 521-643, gnl|xenTro1|scaffold_555 (158027-158150) | |
| 1012-1279, gnl|bosTau2|chr11 (35992900-35992637) | |
| 1012-1279, gnl|Hg17|chrX (33052738-33053003) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| nep (0.36785) | |
| isp (0.300752) | |
| nms (0.213858) | |
| mgm (0.180343) | |
| fat (0.147427) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| isp (0.300752) | |
| nms (0.213858) | |
| mgm (0.180343) | |
| fat (0.147427) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) |