Ss1.1-Lng1-LNG010035A06.5
|
CGGCGGATTCACGCGCAGCGGCGGTGGGTTTTCACCCTCGGAGAAGGGTCCTCGGTGTAG
GTCTCGGCTCTTCACAGTCCTCCCTTCGGAATTATAAAGTTCAGGAAATATGTCTCGAAG
ATATGATTCCAGGACCACTATATTTTCTCCAGAAGGTCGCTTGTACCAAGTTGAATATGC
CATGGAAGCTATTGGACATGCAGGCACCTGTTTGGGAATTTTAGCAAATGATGGTGTTTT
GCTTGCAGCAGAGAGGCGCAACATCCACAAGCTTCTTGATGAAGTCTTTTTTTCTGAAAA
AATTTATAAACTGAATGAGGATATGGCCTGCAGTGTGGCAGGTATAACTTCTGATGCTAA
TGTTCTGACTAATGAACTGAGGCTCATCGCTCAAAGGTATTTATTACAGTATCAGGAGCC
AATTCCTTGTGAGCAGTTGGTCACAGCACTGTGTGATATCAAACAAGCTTATACACAGTT
TGGAGGAAAACGTCCTTTTGGTGTTTCGTTGCTTTACATTGGCTGGGATAAACACTATGG
CTTTCAGCTCTATCAGAGTGACCCTAGTGGAAACTATGGTGGATGGAAAGCCACATGCAT
TGGAAATAATAGCGCTGCAGCTGTGTCAATGCTGAAACAAGACTACAAAGAAGGAGAAAT
GACTCTGAAGTCAGCACTTGCTTTAGCTATCAAAGTCCTAAATAAGACCATGGATGTTAG
TAAGCTTTCTGCTGAAAAAGTGGAAATTGCCACACTAACGAGAGAGAATGGAAAGACAGT
CATCAGAGTTCTCAAACAAAAGGAAGTGGAGCAGTTGATCAAAAAACATGAGGAGGAAGA
AGCTAAAGCTGAGCGTGAGAAGAAAGAAAAAGAACAGAAAGAAAAGGATAAATAGAAGAC
AAAATCAGGGATTTCATAACTCATTTGGGGCACCAGTTCAGTGTAAAAGCTGTCCTACTC
TTCCACACTGAGAAAGCTTTGACTTTTTTAAAACTTGTCTAGTGGGAAAATAGGATGGTA
CCAACTGAATTGGGTCCTTGTTATTTCTGCCCAGTTGAATATTGTAATGATGATTACTCT
ATGGACATCTTAATCACCACGCCCCCCCCCTTTTTTTGAATAAAACTTGGAAAGGATGGA
AATGGTGAAGGAAAAAGTTCTCTAGCAATAACTGTTAAAGGACCATGGCTTTTCATGCTT
TATGTATATCGTGGCTGCCTTTGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGCGGATTCACGCGCAGCGGCGGTGGGTTTTCACCCTCGGAGAAGGGTCCTCGGTGTAG
GTCTCGGCTCTTCACAGTCCTCCCTTCGGAATTATAAAGTTCAGGAAATATGTCTCGAAG
ATATGATTCCAGGACCACTATATTTTCTCCAGAAGGTCGCTTGTACCAAGTTGAATATGC
CATGGAAGCTATTGGACATGCAGGCACCTGTTTGGGAATTTTAGCAAATGATGGTGTTTT
GCTTGCAGCAGAGAGGCGCAACATCCACAAGCTTCTTGATGAAGTCTTTTTTTCTGAAAA
AATTTATAAACTGAATGAGGATATGGCCTGCAGTGTGGCAGGTATAACTTCTGATGCTAA
TGTTCTGACTAATGAACTGAGGCTCATCGCTCAAAGGTATTTATTACAGTATCAGGAGCC
AATTCCTTGTGAGCAGTTGGTCACAGCACTGTGTGATATCAAACAAGCTTATACACAGTT
TGGAGGAAAACGTCCTTTTGGTGTTTCGTTGCTTTACATTGGCTGGGATAAACACTATGG
CTTTCAGCTCTATCAGAGTGACCCTAGTGGAAACTATGGTGGATGGAAAGCCACATGCAT
TGGAAATAATAGCGCTGCAGCTGTGTCAATGCTGAAACAAGACTACAAAGAAGGAGAAAT
GACTCTGAAGTCAGCACTTGCTTTAGCTATCAAAGTCCTAAATAAGACCATGGATGTTAG
TAAGCTTTCTGCTGAAAAAGTGGAAATTGCCACACTAACGAGAGAGAATGGAAAGACAGT
CATCAGAGTTCTCAAACAAAAGGAAGTGGAGCAGTTGATCAAAAAACATGAGGAGGAAGA
AGCTAAAGCTGAGCGTGAGAAGAAAGAAAAAGAACAGAAAGAAAAGGATAAATAGAAGAC
AAAATCAGGGATTTCATAACTCATTTGGGGCACCAGTTCAGTGTAAAAGCTGTCCTACTC
TTCCACACTGAGAAAGCTTTGACTTTTTTAAAACTTGTCTAGTGGGAAAATAGGATGGTA
CCAACTGAATTGGGTCCTTGTTATTTCTGCCCAGTTGAATATTGTAATGATGATTACTCT
ATGGACATCTTAATCACCACGCCCCCCCCCTTTTTTTGAATAAAACTTGGAAAGGATGGA
AATGGTGAAGGAAAAAGTTCTCTAGCAATAACTGTTAAAGGACCATGGCTTTTCATGCTT
TATGTATATCGTGGCTGCCTTTGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
143-319, gnl|bosTau2|chr21 (20327771-20327595) |
|
143-319, gnl|canFam2|chrX (56172080-56172252) |
|
143-319, gnl|echTel1|scaffold_320207 (114602-114430) |
|
143-319, gnl|fr1|chrUn (5300985-5301243) |
|
143-319, gnl|Hg17|chr15 (76621867-76622043) |
|
143-319, gnl|hg17|chr6 (62054578-62054745) |
|
143-319, gnl|loxAfr1|scaffold_6267 (70154-69987) |
|
143-319, gnl|mm7|chr18 (36986412-36986240) |
|
143-319, gnl|Mm7|chr9 (54982808-54982978) |
|
143-319, gnl|panTro1|chr5 (62696253-62696086) |
|
143-319, gnl|rheMac2|chr4 (57942204-57942036) |
|
143-319, gnl|rn3|chr7 (32702206-32702360) |
|
143-319, gnl|tetNig1|chr5 (10758798-10758542) |
| |
|
484-617, gnl|bosTau2|chr21 (20325337-20325204) |
|
484-617, gnl|Hg17|chr15 (76625029-76625162) |
|
484-617, gnl|Mm7|chr9 (54986391-54986524) |
| |
|
739-1180, gnl|bosTau2|chr21 (20323204-20322752) |
|
739-1180, gnl|Hg17|chr15 (76628185-76628626) |
|
739-1180, gnl|Mm7|chr9 (54987769-54988212) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
143-319, gnl|bosTau2|chr21 (20327771-20327595) |
|
143-319, gnl|canFam2|chrX (56172080-56172252) |
|
143-319, gnl|echTel1|scaffold_320207 (114602-114430) |
|
143-319, gnl|fr1|chrUn (5300985-5301243) |
|
143-319, gnl|Hg17|chr15 (76621867-76622043) |
|
143-319, gnl|hg17|chr6 (62054578-62054745) |
|
143-319, gnl|loxAfr1|scaffold_6267 (70154-69987) |
|
143-319, gnl|mm7|chr18 (36986412-36986240) |
|
143-319, gnl|Mm7|chr9 (54982808-54982978) |
|
143-319, gnl|panTro1|chr5 (62696253-62696086) |
|
143-319, gnl|rheMac2|chr4 (57942204-57942036) |
|
143-319, gnl|rn3|chr7 (32702206-32702360) |
|
143-319, gnl|tetNig1|chr5 (10758798-10758542) |
| |
|
484-617, gnl|bosTau2|chr21 (20325337-20325204) |
|
484-617, gnl|Hg17|chr15 (76625029-76625162) |
|
484-617, gnl|Mm7|chr9 (54986391-54986524) |
| |
|
739-1180, gnl|bosTau2|chr21 (20323204-20322752) |
|
739-1180, gnl|Hg17|chr15 (76628185-76628626) |
|
739-1180, gnl|Mm7|chr9 (54987769-54988212) |
|
tbr (0.925069) |
|
nlu (0.575043) |
|
nmm (0.531209) |
|
ldo (0.485013) |
|
amn (0.417711) |
|
hea (0.408998) |
|
ste (0.405625) |
|
col (0.390016) |
|
elu (0.385356) |
|
sin (0.349895) |
|
rec (0.346141) |
|
vin (0.332557) |
|
fat (0.294855) |
|
lin (0.291206) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
sug (0.254582) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
fty (0.17584) |
|
ton (0.1755) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
cki (0.165235) |
|
liv (0.146284) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ute (0.132784) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
tbr (0.925069) |
|
nlu (0.575043) |
|
nmm (0.531209) |
|
ldo (0.485013) |
|
amn (0.417711) |
|
hea (0.408998) |
|
ste (0.405625) |
|
col (0.390016) |
|
elu (0.385356) |
|
sin (0.349895) |
|
rec (0.346141) |
|
vin (0.332557) |
|
fat (0.294855) |
|
lin (0.291206) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
sug (0.254582) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
fty (0.17584) |
|
ton (0.1755) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
cki (0.165235) |
|
liv (0.146284) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ute (0.132784) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
med (0.116252) |
|
jca (0.11396) |
|
nbm (0.0993246) |
