Ss1.1-Lng1-LNG010035A07.5
|
GCTGCCAACGCCCCGGCTGAGGAGCTGAGGTCATCATCAAATTTGAAATATTTAAAGTGG
ATACAAAACTGTTTCAGCAATGCAGACGATTAAGTGTGTTGTTGTGGGCGATGGTGCCGT
TGGTAAAACATGTCTCCTGATATCCTACACGACAAACAAATTTCCATCTGAGTATGTACC
GACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATATACTCTTGG
ACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACA
AACAGATGTATTTCTAGTCTGTTTTTCAGTGGTCTCTCCATCCTCGTTTGAAAATGTGAA
AGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCTCGTTGG
GACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAATAAACA
GAAGCCTATCACTCCAGAGACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTA
TGTGGAGTGTTCTGCACTCACACAGAAAGGCCTAAAGAATGTATTTGACGAAGCAATATT
GGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGAACGTC
TCTCCAGAGCCCTTTCTGCACAGCTGGTGTCGGCATCATACTAAAAGCAATGTTTAAATC
AAACTAAAGATTAAAAATTAAAATTCGTTTTTGCAATAATGACAAATGCCCTGCACCTAC
CCACATGCACTCGTGTGAGACAAGGCCCATAGGTATGGCCCCCTTCCCCCCTCAGTACTA
GTTAATTTCAAGTAATTGTGTATTGTCAGAAAAGTGATCAGTACTAGTTTTTGTTTTGTC
GTTTCAAAAAAATTATTTTGTTTTGTTTAAAAGCAAGGCATGCTTGTGATGACTCTGTAA
CAGACTAATTGGGGTGGTTGAAGCTGTTCCCGGGTTCCACTCTGGAGAGTAATCTGGGAT
ATCTAGGTTTTTTTTTCCCCCCTCTCCCCTTTTTTGTTTGTTTTTTTGGGCGGGGCAGTG
TGTGTGGGGGGGTTTGTTTTTATTTAGTCATGTTTTTTTAATTCATTAACCATTGGACAG
CCCTTGAGGAGGACAGGTTGATTCCACATTCCACTTCCTAGATCTAGTTTAGAAAACATG
TTCCCCATCTGGTGCTCTTAGGAAGGAGTATAGTAAACGCCTCATTTAATAATATACTCC
TTTTTGAAAGTTGCCTTTTCTCTCCACCCTTGAGTAGGTCCAGTATTTGATGAAACTCAT
GAAAGTGGGTGGAACCTGTCTTGCCCCTCCTCTTTTCTAGGATGCACTATATATGTGACT
GTGACTTTCAAGGAAATTTGTTTGCCATTTGCTAATTTTTTTTGAAGTTAATTTCTAACT
TCTTTCACTGATAAATGAAGAAAAGTATTGCACCTTTTGAAATACACCAAATGGATTGAG
TACGTAATTAAAAAACATTTTTTTTTTCCCTGTCAGTCATTGTCTTAATATGCTTAGCAT
AGACGTGCAGCTTAATAGTGTGAGATCTGGTGTTCCTAGAACACAGCTGAAGACCTGGTA
TATAGAGGAAATCCGAGGGGTGGTGCTAGAAGACAGATGTCTACGGATGATTCACATCCT
CTTCCAAGTTATGAGGATGGAGACCTGCTTCATTAAGAAGCTGGGGGTGGGGTGGGGGTG
GGGAGAACATTTAACAACATGGGGACCAGTCAGGGGAATCCCCTTATTTCTGTTTTGCAT
ATGAGGAACCCTAGAGCAGCCAGTTGAGGCTCTCTAGTTTAATAAAACTCCTGGGGAGAG
TCTTATGCAGACTCTTCGTAAGTGTTAATAGGGATTTTATCAGCTTATTTTGGTTGCAGT
TTCCAATTTTTAAAAATGTTAGGTTATCTTCCCCACCTTCCCCAAATCCTAATTCTTGTA
GATTTCATTAGTGTTGAACCAATGCTTTTCTCATGTCTGAATTCTTTGTATATGCATTCT
TTTCAGATGTATTAAACAAACAAAAAACCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGCCAACGCCCCGGCTGAGGAGCTGAGGTCATCATCAAATTTGAAATATTTAAAGTGG
ATACAAAACTGTTTCAGCAATGCAGACGATTAAGTGTGTTGTTGTGGGCGATGGTGCCGT
TGGTAAAACATGTCTCCTGATATCCTACACGACAAACAAATTTCCATCTGAGTATGTACC
GACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATATACTCTTGG
ACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACA
AACAGATGTATTTCTAGTCTGTTTTTCAGTGGTCTCTCCATCCTCGTTTGAAAATGTGAA
AGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCTCGTTGG
GACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAATAAACA
GAAGCCTATCACTCCAGAGACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTA
TGTGGAGTGTTCTGCACTCACACAGAAAGGCCTAAAGAATGTATTTGACGAAGCAATATT
GGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGAACGTC
TCTCCAGAGCCCTTTCTGCACAGCTGGTGTCGGCATCATACTAAAAGCAATGTTTAAATC
AAACTAAAGATTAAAAATTAAAATTCGTTTTTGCAATAATGACAAATGCCCTGCACCTAC
CCACATGCACTCGTGTGAGACAAGGCCCATAGGTATGGCCCCCTTCCCCCCTCAGTACTA
GTTAATTTCAAGTAATTGTGTATTGTCAGAAAAGTGATCAGTACTAGTTTTTGTTTTGTC
GTTTCAAAAAAATTATTTTGTTTTGTTTAAAAGCAAGGCATGCTTGTGATGACTCTGTAA
CAGACTAATTGGGGTGGTTGAAGCTGTTCCCGGGTTCCACTCTGGAGAGTAATCTGGGAT
ATCTAGGTTTTTTTTTCCCCCCTCTCCCCTTTTTTGTTTGTTTTTTTGGGCGGGGCAGTG
TGTGTGGGGGGGTTTGTTTTTATTTAGTCATGTTTTTTTAATTCATTAACCATTGGACAG
CCCTTGAGGAGGACAGGTTGATTCCACATTCCACTTCCTAGATCTAGTTTAGAAAACATG
TTCCCCATCTGGTGCTCTTAGGAAGGAGTATAGTAAACGCCTCATTTAATAATATACTCC
TTTTTGAAAGTTGCCTTTTCTCTCCACCCTTGAGTAGGTCCAGTATTTGATGAAACTCAT
GAAAGTGGGTGGAACCTGTCTTGCCCCTCCTCTTTTCTAGGATGCACTATATATGTGACT
GTGACTTTCAAGGAAATTTGTTTGCCATTTGCTAATTTTTTTTGAAGTTAATTTCTAACT
TCTTTCACTGATAAATGAAGAAAAGTATTGCACCTTTTGAAATACACCAAATGGATTGAG
TACGTAATTAAAAAACATTTTTTTTTTCCCTGTCAGTCATTGTCTTAATATGCTTAGCAT
AGACGTGCAGCTTAATAGTGTGAGATCTGGTGTTCCTAGAACACAGCTGAAGACCTGGTA
TATAGAGGAAATCCGAGGGGTGGTGCTAGAAGACAGATGTCTACGGATGATTCACATCCT
CTTCCAAGTTATGAGGATGGAGACCTGCTTCATTAAGAAGCTGGGGGTGGGGTGGGGGTG
GGGAGAACATTTAACAACATGGGGACCAGTCAGGGGAATCCCCTTATTTCTGTTTTGCAT
ATGAGGAACCCTAGAGCAGCCAGTTGAGGCTCTCTAGTTTAATAAAACTCCTGGGGAGAG
TCTTATGCAGACTCTTCGTAAGTGTTAATAGGGATTTTATCAGCTTATTTTGGTTGCAGT
TTCCAATTTTTAAAAATGTTAGGTTATCTTCCCCACCTTCCCCAAATCCTAATTCTTGTA
GATTTCATTAGTGTTGAACCAATGCTTTTCTCATGTCTGAATTCTTTGTATATGCATTCT
TTTCAGATGTATTAAACAAACAAAAAACCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|17390624|gb|AAH18266.1| |
Protein identifier
|
gi|17390624|gb|AAH18266.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
15-316, gnl|bosTau2|chr12 (3043695-3043402) |
|
15-316, gnl|Hg17|chr4 (22405907-22405612) |
|
15-316, gnl|Mm7|chr4 (43814130-43813838) |
| |
|
401-1018, gnl|bosTau2|chr12 (3042951-3042328) |
|
401-1018, gnl|Hg17|chr4 (22405521-22404881) |
|
401-1018, gnl|Mm7|chr4 (43813768-43812321) |
| |
|
1244-1501, gnl|bosTau2|chr12 (3041814-3041566) |
|
1244-1501, gnl|Hg17|chr4 (22404642-22404415) |
|
1244-1501, gnl|Mm7|chr4 (43812078-43811843) |
| |
|
1765-2083, gnl|bosTau2|chr27 (22167711-22167404) |
|
1765-2083, gnl|Hg17|chr1 (22164436-22164745) |
|
1765-2083, gnl|Mm7|chr4 (136698445-136698141) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
15-316, gnl|bosTau2|chr12 (3043695-3043402) |
|
15-316, gnl|Hg17|chr4 (22405907-22405612) |
|
15-316, gnl|Mm7|chr4 (43814130-43813838) |
| |
|
401-1018, gnl|bosTau2|chr12 (3042951-3042328) |
|
401-1018, gnl|Hg17|chr4 (22405521-22404881) |
|
401-1018, gnl|Mm7|chr4 (43813768-43812321) |
| |
|
1244-1501, gnl|bosTau2|chr12 (3041814-3041566) |
|
1244-1501, gnl|Hg17|chr4 (22404642-22404415) |
|
1244-1501, gnl|Mm7|chr4 (43812078-43811843) |
| |
|
1765-2083, gnl|bosTau2|chr27 (22167711-22167404) |
|
1765-2083, gnl|Hg17|chr1 (22164436-22164745) |
|
1765-2083, gnl|Mm7|chr4 (136698445-136698141) |
|
nlu (0.958405) |
|
ese (0.759013) |
|
fbs (0.701385) |
|
jej (0.692452) |
|
ece (0.687916) |
|
isp (0.601504) |
|
lnt (0.569233) |
|
nmm (0.531209) |
|
ill (0.526778) |
|
cty (0.5204) |
|
mcp (0.511945) |
|
ebs (0.473205) |
|
hyp (0.42851) |
|
hea (0.408998) |
|
ste (0.405625) |
|
pla (0.401016) |
|
col (0.390016) |
|
bla (0.373042) |
|
eru (0.360144) |
|
ton (0.351) |
|
cbl (0.344392) |
|
jca (0.34188) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
nje (0.33184) |
|
cki (0.330469) |
|
cje (0.330469) |
|
csp (0.322373) |
|
fco (0.314416) |
|
sme (0.305437) |
|
eli (0.303628) |
|
lin (0.291206) |
|
spl (0.286369) |
|
csk (0.281492) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
ute (0.265569) |
|
thg (0.253582) |
|
cly (0.241284) |
|
clu (0.239292) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
spc (0.226732) |
|
tes (0.207814) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
sin (0.174948) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
nca (0.136874) |
|
che (0.136314) |
|
sug (0.127291) |
|
tra (0.123092) |
|
eep (0.122564) |
|
med (0.116252) |
|
nlu (0.958405) |
|
ese (0.759013) |
|
fbs (0.701385) |
|
jej (0.692452) |
|
ece (0.687916) |
|
isp (0.601504) |
|
lnt (0.569233) |
|
nmm (0.531209) |
|
ill (0.526778) |
|
cty (0.5204) |
|
mcp (0.511945) |
|
ebs (0.473205) |
|
hyp (0.42851) |
|
hea (0.408998) |
|
ste (0.405625) |
|
pla (0.401016) |
|
col (0.390016) |
|
bla (0.373042) |
|
eru (0.360144) |
|
ton (0.351) |
|
cbl (0.344392) |
|
jca (0.34188) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
nje (0.33184) |
|
cki (0.330469) |
|
cje (0.330469) |
|
csp (0.322373) |
|
fco (0.314416) |
|
sme (0.305437) |
|
eli (0.303628) |
|
lin (0.291206) |
|
spl (0.286369) |
|
csk (0.281492) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
ute (0.265569) |
|
thg (0.253582) |
|
cly (0.241284) |
|
clu (0.239292) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
spc (0.226732) |
|
tes (0.207814) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
sin (0.174948) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
nca (0.136874) |
|
che (0.136314) |
|
sug (0.127291) |
|
tra (0.123092) |
|
eep (0.122564) |
|
med (0.116252) |
