Non-Coding RNA Search

Ss1.1-Lng1-LNG010035D02.5

Sequence:


               
               GGAGAGGCAGGAAGAGGAGCAGGAGCTGCGCGGCGAGGAGGAGCCCCCCCAGGCCGGCCC
CGCGGAGGAAGACGGGGGAGAGGCCTTCGCCTTCAGGTACAGCCCCGGGAAGCTGCGAGG
AAACCAGTACAAGAAGATGATGACCAAAGAGGAACTGGAGGAGGAGCAGAGAACCGAGGA
ATAATGAAGTTATCCTTAGCCTCCTCCTAAAGGCTTTTCTTTTTGGCGTCTTAAAACTTG
AGAGATAACGTGGAGCCCCCAGAGAGGAGTCAGCAGGCTCCCGGGGTGCATTCTGCCTAT
AAACGTGCCAGGACTAGGCCCTCAGTCAGCACTTCCCTTGGGGAGGGTCCAGAACGCCTG
TGGCACTGCCCAGGCAGAGCCCCCCCCGCCATTGTTTGCGTGGATTGCTTTGCGAAGCTG
AAGGGTTTTCCTGGACTTCTGGGTTCCTTGTCACTCCCCCTGTCCACATGCCCTTTACAC
CTGCAATGTCACCAGTGTCAGCCATGCCATCCTTTTAAAATTAGTTTCCTTCTAGCCTTC
CTGCTTTTCAGCACAGAAGCCAAACCTTGAATGACCCTGCGGTGTGATGGACAAATGAGG
GAGAGGGGCCTGTGCTCACCGGCTGGTCATGGCTGGTCCGCCCTGCACTCTGTTTTCGGC
CAACTCAGTAGAGGGGGTGAGACCCCCTGTGCTGAAGACCGGGTGGCAAAGAACCAGGAC
CAGCTGTTGGTTTCCCCTGCCTTTTCCCTCCACGTAGAGCAGGCCTGGATCCAGCCCTCT
TGTTGCTAAGAGGCCTTTTCACCGACGGTCTTACCAGCTCAGCCAAATCTCCACCTTCAC
TTTGGCAGAAGCAATAACAATAGTGTTCACTTAACATAGCCGTTTGGAGTCTGCCTCTTC
CGAGACCTCACAGATGAGTTAACGCCACCAGAGAAGCAGATCAGTCCCAGATTCGTTTCT
TGGAATTTTCTATTTGCTGGTATTTATACTATATCAAACTAGTCTGCAGTTTTTAGCTAT
GTTGATTAAAACATGTTTTTAAAGTAGTGTTTATAGACAGTTTTTCTCTGTTTAATGCAG
GGCTGGGAAATGCCCAGCAGCAGCCCCAGGGCATGTCGCATTCCTAGGGACCTTCTCCTT
GGGCCTAATGCTCAGATTCAGGGGTTTAGGACTGAACAGGCATCAAAGTAACAGCCCCGC
AGAGCCAGTGGCAAACAGAAGACGTGCTCTTGTGAGCACACCTGTCCCCACACAGCAATA
GCAACAGCCGTGTCCTTGTCCTTGTCCTGGCTGGGCTCTGACTGGTAAATAGGTAGCTCC
CTCCAAGTTACTGTTTGTCTGGACACCTTCTGAACGTGGCTTTTAGGCACCAAGCCTCAC
GCATTCCAGATGGCTTGGATCTGTGTATTCAGCCTTTGTTCAGTCCAATAAACTGTGTAA
ATGGTCTTGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGGCAGGAAGAGGAGCAGGAGCTGCGCGGCGAGGAGGAGCCCCCCCAGGCCGGCCC
CGCGGAGGAAGACGGGGGAGAGGCCTTCGCCTTCAGGTACAGCCCCGGGAAGCTGCGAGG
AAACCAGTACAAGAAGATGATGACCAAAGAGGAACTGGAGGAGGAGCAGAGAACCGAGGA
ATAATGAAGTTATCCTTAGCCTCCTCCTAAAGGCTTTTCTTTTTGGCGTCTTAAAACTTG
AGAGATAACGTGGAGCCCCCAGAGAGGAGTCAGCAGGCTCCCGGGGTGCATTCTGCCTAT
AAACGTGCCAGGACTAGGCCCTCAGTCAGCACTTCCCTTGGGGAGGGTCCAGAACGCCTG
TGGCACTGCCCAGGCAGAGCCCCCCCCGCCATTGTTTGCGTGGATTGCTTTGCGAAGCTG
AAGGGTTTTCCTGGACTTCTGGGTTCCTTGTCACTCCCCCTGTCCACATGCCCTTTACAC
CTGCAATGTCACCAGTGTCAGCCATGCCATCCTTTTAAAATTAGTTTCCTTCTAGCCTTC
CTGCTTTTCAGCACAGAAGCCAAACCTTGAATGACCCTGCGGTGTGATGGACAAATGAGG
GAGAGGGGCCTGTGCTCACCGGCTGGTCATGGCTGGTCCGCCCTGCACTCTGTTTTCGGC
CAACTCAGTAGAGGGGGTGAGACCCCCTGTGCTGAAGACCGGGTGGCAAAGAACCAGGAC
CAGCTGTTGGTTTCCCCTGCCTTTTCCCTCCACGTAGAGCAGGCCTGGATCCAGCCCTCT
TGTTGCTAAGAGGCCTTTTCACCGACGGTCTTACCAGCTCAGCCAAATCTCCACCTTCAC
TTTGGCAGAAGCAATAACAATAGTGTTCACTTAACATAGCCGTTTGGAGTCTGCCTCTTC
CGAGACCTCACAGATGAGTTAACGCCACCAGAGAAGCAGATCAGTCCCAGATTCGTTTCT
TGGAATTTTCTATTTGCTGGTATTTATACTATATCAAACTAGTCTGCAGTTTTTAGCTAT
GTTGATTAAAACATGTTTTTAAAGTAGTGTTTATAGACAGTTTTTCTCTGTTTAATGCAG
GGCTGGGAAATGCCCAGCAGCAGCCCCAGGGCATGTCGCATTCCTAGGGACCTTCTCCTT
GGGCCTAATGCTCAGATTCAGGGGTTTAGGACTGAACAGGCATCAAAGTAACAGCCCCGC
AGAGCCAGTGGCAAACAGAAGACGTGCTCTTGTGAGCACACCTGTCCCCACACAGCAATA
GCAACAGCCGTGTCCTTGTCCTTGTCCTGGCTGGGCTCTGACTGGTAAATAGGTAGCTCC
CTCCAAGTTACTGTTTGTCTGGACACCTTCTGAACGTGGCTTTTAGGCACCAAGCCTCAC
GCATTCCAGATGGCTTGGATCTGTGTATTCAGCCTTTGTTCAGTCCAATAAACTGTGTAA
ATGGTCTTGAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               170-632, gnl|bosTau2|chr19 (49948033-49948509)
               

               
               170-632, gnl|Hg17|chr17 (72188558-72188066)
               


               
               635-1450, gnl|bosTau2|chr19 (49948536-49949353)
               

               
               635-1450, gnl|Hg17|chr17 (72188040-72187246)
               

               
               635-1450, gnl|Mm7|chr11 (116916381-116915616)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-632, gnl|bosTau2|chr19 (49948033-49948509)
               

               
               170-632, gnl|Hg17|chr17 (72188558-72188066)
               


               
               635-1450, gnl|bosTau2|chr19 (49948536-49949353)
               

               
               635-1450, gnl|Hg17|chr17 (72188040-72187246)
               

               
               635-1450, gnl|Mm7|chr11 (116916381-116915616)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               fce (0.543183)
               

               
               eye (0.511509)
               

               
               eru (0.480192)
               

               
               amn (0.417711)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               eye (0.511509)
               

               
               eru (0.480192)
               

               
               amn (0.417711)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	170-632, gnl\|bosTau2\|chr19 (49948033-49948509)
	170-632, gnl\|Hg17\|chr17 (72188558-72188066)

	635-1450, gnl\|bosTau2\|chr19 (49948536-49949353)
	635-1450, gnl\|Hg17\|chr17 (72188040-72187246)
	635-1450, gnl\|Mm7\|chr11 (116916381-116915616)

	fce (0.543183)
	eye (0.511509)
	eru (0.480192)
	amn (0.417711)
	ebs (0.354904)
	fbs (0.350693)
	csp (0.322373)
	cov (0.264306)
	mas (0.210305)
	fty (0.17584)
	duo (0.172801)
	cut (0.169924)
	csk (0.140746)
	cst (0.140036)
	lyg (0.133103)
	nmm (0.132802)
	cty (0.10408)