Non-Coding RNA Search

Ss1.1-Lng1-LNG010035H01.5

Sequence:


               
               ACATGGCCGAAGTGAGCAGCGTCAAACGTAGCCAGCGCAGTGAGGAAAAAGGGCCTGAAG
GGTTGTCTCAGGAACTTCCGCGCCCTGGTACTACCATTTCAAGGGTGAAGCTTTTTGACA
CCATGGTGGACACCTTTCTCCAGAAGCTGGTCGCTGCTGGGAGTTACCAGAGATTCACTG
ACTGTTACAAGTGCTTCTACCAGTTGCAGCCTGAGATGACACAGCGCATCTATGACAAGT
TTATAACTCAGTTGCAGACATCTATCCGGGAGGAAATCTCTGAAATCAAAGCAGAGGGGA
ACCTGGAAGCTGTCCTGAATGCCTTGGATGGAATTGTGGAAGAAGGCAAGGACCGCAAGG
AGACGGCCTGGCGCCCTAGTGGGATCCCTGAGAAAGATCTGCGCAGCACCATGGTGCCCT
ACTTCCTGCAGCAGCGGGACATCCTGCAGCGCCGTGTACAGAAGCAGGAGGCCGAGAACA
GGCAGCTGGCAGAAGCTGTCCTGGCTGGGCGCAGGCAGGTGGAGGAGCTGCAGCTGCAAG
GCCAGGCCCGGCAGCAGGCCTGGCAGGCTCTACACAGAGAACAGAAGGAGCTGATGGCCG
TGCTGAGGGAGCCTGAGTGAAGAAGAGAGGGCCAGGCCCGGGAGCAGAGGGCAGTCAAGG
ACAAAGGCCTGTGGTCCAGCATGCTGAGCCTGAGTGAGCTGCCTCTAAGAACAGCTAAAA
TGGTGCCCAGTCCCAAAGCAGTGATGGAATTTGCTGGAGAAGGAGGCCTCAGCAGTCACC
ACTGCCACTGTGCCTTTGGGGCTTCCTTGGGTTTTCTTCTAACTTGAGGATTCTTGGCCG
ACTCCGCCCTGGGACTCAGGCACTATGCTTCCTCTCCTCTAGGTTCAGGCCAGCCCCTCC
CTTCCCCCCGTCACACACCCCGCCACTCCTGAGCCCTCCCTGGGACCTGGCTTGGCGAAT
CTGTTTTCGGTCTCCACTGATTGCCCCCTTGCTAGCCAGCCTGAGGGCCCTTGCCATGTC
CTCCCCACATCCGCAAATAAACTTCCTCCGCTACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGGCCGAAGTGAGCAGCGTCAAACGTAGCCAGCGCAGTGAGGAAAAAGGGCCTGAAG
GGTTGTCTCAGGAACTTCCGCGCCCTGGTACTACCATTTCAAGGGTGAAGCTTTTTGACA
CCATGGTGGACACCTTTCTCCAGAAGCTGGTCGCTGCTGGGAGTTACCAGAGATTCACTG
ACTGTTACAAGTGCTTCTACCAGTTGCAGCCTGAGATGACACAGCGCATCTATGACAAGT
TTATAACTCAGTTGCAGACATCTATCCGGGAGGAAATCTCTGAAATCAAAGCAGAGGGGA
ACCTGGAAGCTGTCCTGAATGCCTTGGATGGAATTGTGGAAGAAGGCAAGGACCGCAAGG
AGACGGCCTGGCGCCCTAGTGGGATCCCTGAGAAAGATCTGCGCAGCACCATGGTGCCCT
ACTTCCTGCAGCAGCGGGACATCCTGCAGCGCCGTGTACAGAAGCAGGAGGCCGAGAACA
GGCAGCTGGCAGAAGCTGTCCTGGCTGGGCGCAGGCAGGTGGAGGAGCTGCAGCTGCAAG
GCCAGGCCCGGCAGCAGGCCTGGCAGGCTCTACACAGAGAACAGAAGGAGCTGATGGCCG
TGCTGAGGGAGCCTGAGTGAAGAAGAGAGGGCCAGGCCCGGGAGCAGAGGGCAGTCAAGG
ACAAAGGCCTGTGGTCCAGCATGCTGAGCCTGAGTGAGCTGCCTCTAAGAACAGCTAAAA
TGGTGCCCAGTCCCAAAGCAGTGATGGAATTTGCTGGAGAAGGAGGCCTCAGCAGTCACC
ACTGCCACTGTGCCTTTGGGGCTTCCTTGGGTTTTCTTCTAACTTGAGGATTCTTGGCCG
ACTCCGCCCTGGGACTCAGGCACTATGCTTCCTCTCCTCTAGGTTCAGGCCAGCCCCTCC
CTTCCCCCCGTCACACACCCCGCCACTCCTGAGCCCTCCCTGGGACCTGGCTTGGCGAAT
CTGTTTTCGGTCTCCACTGATTGCCCCCTTGCTAGCCAGCCTGAGGGCCCTTGCCATGTC
CTCCCCACATCCGCAAATAAACTTCCTCCGCTACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q86VJ6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q86VJ6_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               317-498, - strand, RNAz p=0.989008
               

               
               503-804, + strand, RNAz p=0.964572
               

               
               912-1056, - strand, RNAz p=0.997279

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-498, - strand, RNAz p=0.989008
               

               
               503-804, + strand, RNAz p=0.964572
               

               
               912-1056, - strand, RNAz p=0.997279

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_007221, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_007221, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-163, gnl|bosTau2|chr16 (12022376-12022214)
               

               
               1-163, gnl|Hg17|chr1 (152995878-152996040)
               

               
               1-163, gnl|Mm7|chr3 (88524110-88523957)
               


               
               297-498, gnl|bosTau2|chr14 (17225991-17225792)
               

               
               297-498, gnl|Hg17|chr1 (153016536-153019311)
               


               
               503-814, gnl|bosTau2|chr14 (17225819-17225522)
               

               
               503-814, gnl|Hg17|chr1 (153019251-153022656)
               


               
               912-1056, gnl|bosTau2|chr14 (17225357-17225214)
               

               
               912-1056, gnl|Hg17|chr1 (153022765-153022901)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-163, gnl|bosTau2|chr16 (12022376-12022214)
               

               
               1-163, gnl|Hg17|chr1 (152995878-152996040)
               

               
               1-163, gnl|Mm7|chr3 (88524110-88523957)
               


               
               297-498, gnl|bosTau2|chr14 (17225991-17225792)
               

               
               297-498, gnl|Hg17|chr1 (153016536-153019311)
               


               
               503-814, gnl|bosTau2|chr14 (17225819-17225522)
               

               
               503-814, gnl|Hg17|chr1 (153019251-153022656)
               


               
               912-1056, gnl|bosTau2|chr14 (17225357-17225214)
               

               
               912-1056, gnl|Hg17|chr1 (153022765-153022901)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               fty (0.351679)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

	317-498, - strand, RNAz p=0.989008
	503-804, + strand, RNAz p=0.964572
	912-1056, - strand, RNAz p=0.997279

	1-163, gnl\|bosTau2\|chr16 (12022376-12022214)
	1-163, gnl\|Hg17\|chr1 (152995878-152996040)
	1-163, gnl\|Mm7\|chr3 (88524110-88523957)

	297-498, gnl\|bosTau2\|chr14 (17225991-17225792)
	297-498, gnl\|Hg17\|chr1 (153016536-153019311)

	503-814, gnl\|bosTau2\|chr14 (17225819-17225522)
	503-814, gnl\|Hg17\|chr1 (153019251-153022656)

	912-1056, gnl\|bosTau2\|chr14 (17225357-17225214)
	912-1056, gnl\|Hg17\|chr1 (153022765-153022901)

	elu (0.385356)
	fty (0.351679)
	cag (0.151194)
	pty (0.142714)
	pla (0.133672)
	eep (0.122564)