Ss1.1-Lng1-LNG010036B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGAGTTTTCAGTTAACGTCTCTTGCTTCCCCCAAAACAAGACGATTCGACCCCGTACC CTTCCCGTGGAAACCTCAACCTCAATGGAAAGACGGTCTCAGGCAGCAGTATTTGGGAAA AGGAATTGGAAGATGTGGCCAGAACACAGATGCTAATACTCAGCCAAGTTCAGGCCTTCT TTTGTCCTCCATCTGGCCTCCATGATTTGACTCTCCAACCTCTCTGGCAGAGAAGCTCAC TGCAAACTCTGCTGAAAGCCAGGGGTCCACTCCCTCTATTGTCTCCACCTCCGTGCTGAC TTTGGCCTTTGGGGTGTGATGGGCCTGGGGCAATGCAGAGGCTCCTAAGCCGGGTCCAAG CTTCAATGCAGAAACAGTTCCGGCAGTAGAGAAAGCCAGCCCTCAGGACGGGGCAACGGA AAACCCAGAGCAGGGCACACTTGGCTCTGAAGTCTTGCAAAGTGGAAATGAGATCTCGAG ATGACAGTGCAGCAGGGGATTGGCTGCAAGCCCTAAGCAACCTATGCTGGAGAGAGGCGA GCCGTGGGCTGGCGCATCTGCGGTGAGGTGGGTGCATTTCTGGAGAGCAGGTCAGAGGCG GGGAGAGCCAGGCAGAAGCAGGAGCTGAAGCCCTTAGACCGGCACCAGGGCCAGCTTAAT GAAGACAAATTGAAGGGCAAACTGAGATCCTTAGAAAACCAGCTGTACACCTGTACCCAG AACTACTCCCCCAGGGGAATGAAGAAGGTGATATTAGAGATGGAAGACCAGAAACACAGC TATGAGCAGAAGGCCAAGGAGTCACTGCAGAAAGTGCTGGAGGAGAAAATGAGTGCAGAA CAGCAGCTGCAGAGCACACAGCGGTCCCTCGCTCTGGCCGAGCAGAAGTGTGAAGAGTGG AGGAGCCAGTACGAGGCTCTGAAGGAGGACTGGAGGACCCTGGGGACCCAGCACAGAGAG CTGGAGAGCCAGCTTCACGTGCTGCAGTCCAAACTGCAGGGGGCAGACAGTAGAGATCTG CAGATGAACCAGGCCCTGCGACTCTTGGAGAACGAGCACCAGGAGCTGCAGGCCAAGATT GCGCGCCTGCAGGGGGACAGAGACCTGTGCAGCTCGGACACCCAGCACCTACAAGATCAG CTACAGAAGTCAGAGGAAGAGAAACTCGCCCTGGTGACTAAAGTACAGCAGCTGCAGAGT CTTCTTCAGAGTCAATCCTTACAGCTCCAGGAACAGGAGAAACGCTTGACAAAGAAAGAT CAGGCTCTGGAGTGGAGTCCAAAGCCCTCCCAGAACGAAGTGGAGCCTGAGGGTCCAGGG AAGGAGAAAGACTGGGATTTCAGAGACCAGCTCCAAGAGAAAACGTTGCAGCTCCTGGCC AAGGAAAAGGAGTGCAGGGACCTGCATTCGGAACTAGACAACCTCAGTGACGAGTACCTC TCCTGCCTGCGCAAGCTGCAGCGCTGTCGAGAAGAGCTGAGCCTGGGCCAGCGGCCACCT CTGTGGAACATTTGTGGTCGATGGCTCCCCGCGCTGATGGTACTGACTGCTATGGCACTG GCAGTGTTCCTGGCCCACAAGGACAGCCTGATGATCTGAATAACTGGTGACAGCTGCCGG GGCTGAAAATCAGAGGCAAGAAACGCCACAAAAAGACTCAGAAGGCTTGAGTACCTTTAA AGGTTTGGGTTTGTCCAATTCAACTGAGATTTCTGACTTTATTGTTTTTCTACTCTGCTG TAACAACAAACAAATAAACTTCACCTGACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGAGTTTTCAGTTAACGTCTCTTGCTTCCCCCAAAACAAGACGATTCGACCCCGTACC CTTCCCGTGGAAACCTCAACCTCAATGGAAAGACGGTCTCAGGCAGCAGTATTTGGGAAA AGGAATTGGAAGATGTGGCCAGAACACAGATGCTAATACTCAGCCAAGTTCAGGCCTTCT TTTGTCCTCCATCTGGCCTCCATGATTTGACTCTCCAACCTCTCTGGCAGAGAAGCTCAC TGCAAACTCTGCTGAAAGCCAGGGGTCCACTCCCTCTATTGTCTCCACCTCCGTGCTGAC TTTGGCCTTTGGGGTGTGATGGGCCTGGGGCAATGCAGAGGCTCCTAAGCCGGGTCCAAG CTTCAATGCAGAAACAGTTCCGGCAGTAGAGAAAGCCAGCCCTCAGGACGGGGCAACGGA AAACCCAGAGCAGGGCACACTTGGCTCTGAAGTCTTGCAAAGTGGAAATGAGATCTCGAG ATGACAGTGCAGCAGGGGATTGGCTGCAAGCCCTAAGCAACCTATGCTGGAGAGAGGCGA GCCGTGGGCTGGCGCATCTGCGGTGAGGTGGGTGCATTTCTGGAGAGCAGGTCAGAGGCG GGGAGAGCCAGGCAGAAGCAGGAGCTGAAGCCCTTAGACCGGCACCAGGGCCAGCTTAAT GAAGACAAATTGAAGGGCAAACTGAGATCCTTAGAAAACCAGCTGTACACCTGTACCCAG AACTACTCCCCCAGGGGAATGAAGAAGGTGATATTAGAGATGGAAGACCAGAAACACAGC TATGAGCAGAAGGCCAAGGAGTCACTGCAGAAAGTGCTGGAGGAGAAAATGAGTGCAGAA CAGCAGCTGCAGAGCACACAGCGGTCCCTCGCTCTGGCCGAGCAGAAGTGTGAAGAGTGG AGGAGCCAGTACGAGGCTCTGAAGGAGGACTGGAGGACCCTGGGGACCCAGCACAGAGAG CTGGAGAGCCAGCTTCACGTGCTGCAGTCCAAACTGCAGGGGGCAGACAGTAGAGATCTG CAGATGAACCAGGCCCTGCGACTCTTGGAGAACGAGCACCAGGAGCTGCAGGCCAAGATT GCGCGCCTGCAGGGGGACAGAGACCTGTGCAGCTCGGACACCCAGCACCTACAAGATCAG CTACAGAAGTCAGAGGAAGAGAAACTCGCCCTGGTGACTAAAGTACAGCAGCTGCAGAGT CTTCTTCAGAGTCAATCCTTACAGCTCCAGGAACAGGAGAAACGCTTGACAAAGAAAGAT CAGGCTCTGGAGTGGAGTCCAAAGCCCTCCCAGAACGAAGTGGAGCCTGAGGGTCCAGGG AAGGAGAAAGACTGGGATTTCAGAGACCAGCTCCAAGAGAAAACGTTGCAGCTCCTGGCC AAGGAAAAGGAGTGCAGGGACCTGCATTCGGAACTAGACAACCTCAGTGACGAGTACCTC TCCTGCCTGCGCAAGCTGCAGCGCTGTCGAGAAGAGCTGAGCCTGGGCCAGCGGCCACCT CTGTGGAACATTTGTGGTCGATGGCTCCCCGCGCTGATGGTACTGACTGCTATGGCACTG GCAGTGTTCCTGGCCCACAAGGACAGCCTGATGATCTGAATAACTGGTGACAGCTGCCGG GGCTGAAAATCAGAGGCAAGAAACGCCACAAAAAGACTCAGAAGGCTTGAGTACCTTTAA AGGTTTGGGTTTGTCCAATTCAACTGAGATTTCTGACTTTATTGTTTTTCTACTCTGCTG TAACAACAAACAAATAAACTTCACCTGACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK126139, + |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 82-649, gnl|bosTau2|chr16 (50798173-50798731) | |
| 82-649, gnl|canFam2|chr7 (11388872-11389446) | |
| 82-649, gnl|dasNov1|scaffold_498 (107523-108012) | |
| 82-649, gnl|hg17|chr1 (206329816-206330387) | |
| 82-649, gnl|Hg17|chr1 (206329849-206330401) | |
| 82-649, gnl|loxAfr1|scaffold_66274 (953-1510) | |
| 82-649, gnl|mm7|chr1 (192743320-192742810) | |
| 82-649, gnl|Mm7|chr1 (192743301-192742794) | |
| 82-649, gnl|oryCun1|scaffold_191272 (8705-8151) | |
| 82-649, gnl|panTro1|chr1 (189945395-189945966) | |
| 82-649, gnl|rheMac2|chr1 (160626074-160625528) | |
| 82-649, gnl|rn3|chr13 (109213526-109213039) | |
| 859-1000, gnl|bosTau2|chr16 (50803989-50804130) | |
| 859-1000, gnl|canFam2|chr7 (11394974-11395126) | |
| 859-1000, gnl|dasNov1|scaffold_498 (112883-113035) | |
| 859-1000, gnl|echTel1|scaffold_324195 (131970-131818) | |
| 859-1000, gnl|galGal2|chr26 (1741364-1741508) | |
| 859-1000, gnl|hg17|chr1 (206337337-206337489) | |
| 859-1000, gnl|Hg17|chr1 (206337336-206337477) | |
| 859-1000, gnl|loxAfr1|scaffold_66274 (7500-7645) | |
| 859-1000, gnl|mm7|chr1 (192737227-192737076) | |
| 859-1000, gnl|Mm7|chr1 (192737226-192737085) | |
| 859-1000, gnl|monDom2|scaffold_13 (12776269-12776421) | |
| 859-1000, gnl|oryCun1|scaffold_199075 (619-767) | |
| 859-1000, gnl|panTro1|chr1 (189953043-189953195) | |
| 859-1000, gnl|rheMac2|chr1 (160619130-160618978) | |
| 859-1000, gnl|rn3|chr13 (109207431-109207279) | |
| 859-1000, gnl|xenTro1|scaffold_138 (1448697-1448849) | |
| 1257-1392, gnl|bosTau2|chr16 (50808994-50809132) | |
| 1257-1392, gnl|canFam2|chr7 (11399673-11399805) | |
| 1257-1392, gnl|dasNov1|scaffold_498 (117241-117373) | |
| 1257-1392, gnl|echTel1|scaffold_324195 (127603-127474) | |
| 1257-1392, gnl|galGal2|chr26 (1742740-1742883) | |
| 1257-1392, gnl|hg17|chr1 (206342167-206342299) | |
| 1257-1392, gnl|Hg17|chr1 (206342208-206342346) | |
| 1257-1392, gnl|loxAfr1|scaffold_66274 (12692-12818) | |
| 1257-1392, gnl|mm7|chr1 (192730964-192730832) | |
| 1257-1392, gnl|Mm7|chr1 (192730921-192730783) | |
| 1257-1392, gnl|monDom2|scaffold_13 (12786416-12786548) | |
| 1257-1392, gnl|panTro1|chr1 (189957909-189958041) | |
| 1257-1392, gnl|rheMac2|chr1 (160614333-160614201) | |
| 1257-1392, gnl|rn3|chr13 (109201096-109200970) | |
| 1513-1773, gnl|bosTau2|chr16 (50810612-50810866) | |
| 1513-1773, gnl|Hg17|chr1 (206343802-206344051) | |
| 1513-1773, gnl|Mm7|chr1 (192728372-192728125) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 82-649, gnl|bosTau2|chr16 (50798173-50798731) | |
| 82-649, gnl|canFam2|chr7 (11388872-11389446) | |
| 82-649, gnl|dasNov1|scaffold_498 (107523-108012) | |
| 82-649, gnl|hg17|chr1 (206329816-206330387) | |
| 82-649, gnl|Hg17|chr1 (206329849-206330401) | |
| 82-649, gnl|loxAfr1|scaffold_66274 (953-1510) | |
| 82-649, gnl|mm7|chr1 (192743320-192742810) | |
| 82-649, gnl|Mm7|chr1 (192743301-192742794) | |
| 82-649, gnl|oryCun1|scaffold_191272 (8705-8151) | |
| 82-649, gnl|panTro1|chr1 (189945395-189945966) | |
| 82-649, gnl|rheMac2|chr1 (160626074-160625528) | |
| 82-649, gnl|rn3|chr13 (109213526-109213039) | |
| 859-1000, gnl|bosTau2|chr16 (50803989-50804130) | |
| 859-1000, gnl|canFam2|chr7 (11394974-11395126) | |
| 859-1000, gnl|dasNov1|scaffold_498 (112883-113035) | |
| 859-1000, gnl|echTel1|scaffold_324195 (131970-131818) | |
| 859-1000, gnl|galGal2|chr26 (1741364-1741508) | |
| 859-1000, gnl|hg17|chr1 (206337337-206337489) | |
| 859-1000, gnl|Hg17|chr1 (206337336-206337477) | |
| 859-1000, gnl|loxAfr1|scaffold_66274 (7500-7645) | |
| 859-1000, gnl|mm7|chr1 (192737227-192737076) | |
| 859-1000, gnl|Mm7|chr1 (192737226-192737085) | |
| 859-1000, gnl|monDom2|scaffold_13 (12776269-12776421) | |
| 859-1000, gnl|oryCun1|scaffold_199075 (619-767) | |
| 859-1000, gnl|panTro1|chr1 (189953043-189953195) | |
| 859-1000, gnl|rheMac2|chr1 (160619130-160618978) | |
| 859-1000, gnl|rn3|chr13 (109207431-109207279) | |
| 859-1000, gnl|xenTro1|scaffold_138 (1448697-1448849) | |
| 1257-1392, gnl|bosTau2|chr16 (50808994-50809132) | |
| 1257-1392, gnl|canFam2|chr7 (11399673-11399805) | |
| 1257-1392, gnl|dasNov1|scaffold_498 (117241-117373) | |
| 1257-1392, gnl|echTel1|scaffold_324195 (127603-127474) | |
| 1257-1392, gnl|galGal2|chr26 (1742740-1742883) | |
| 1257-1392, gnl|hg17|chr1 (206342167-206342299) | |
| 1257-1392, gnl|Hg17|chr1 (206342208-206342346) | |
| 1257-1392, gnl|loxAfr1|scaffold_66274 (12692-12818) | |
| 1257-1392, gnl|mm7|chr1 (192730964-192730832) | |
| 1257-1392, gnl|Mm7|chr1 (192730921-192730783) | |
| 1257-1392, gnl|monDom2|scaffold_13 (12786416-12786548) | |
| 1257-1392, gnl|panTro1|chr1 (189957909-189958041) | |
| 1257-1392, gnl|rheMac2|chr1 (160614333-160614201) | |
| 1257-1392, gnl|rn3|chr13 (109201096-109200970) | |
| 1513-1773, gnl|bosTau2|chr16 (50810612-50810866) | |
| 1513-1773, gnl|Hg17|chr1 (206343802-206344051) | |
| 1513-1773, gnl|Mm7|chr1 (192728372-192728125) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| med (0.58126) | |
| lnt (0.426925) | |
| fty (0.351679) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| csp (0.322373) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| cje (0.165235) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.58126) | |
| lnt (0.426925) | |
| fty (0.351679) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| csp (0.322373) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| cje (0.165235) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |