Ss1.1-Lng1-LNG010036E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTATCGCCGGAAGCAGTTTGAAGATGGCGTCCTCCCAGCAGAATGCTCCGGCTGCAGT TCGTCGTCAGAAGCCGAAGCCAGAGAATCGAGATGAATCAGAACTCCTCACTGTTCCCGA TGGTTGGAAGGAGCCAGCTTTTTCCAAAGAGGACAATCCCAGAGGACTCTTGGAGGAGAG CAGTTTTGCAACTTTGTTCCCAAAATACAGAGAGGCTTACTTGAAAGAGTGCTGGCCATT GGTACAGAAAGCCTTGAATGAACATCATGTTAATGCAACTCTGGACCTGATTGAGGGAAG CATGACTGTCTGTACAACAAAGAAGACTTTTGATCCATACATCATCATTAGGGCCAGAGA CCTAATAAAACTCTTAGCAAGGAGTGTTTCATTTGAACAGGCAGTACGAATTCTTCAGGA TGATGTTGCATGTGACATCATTAAAATAGGTTCTTTAGTAAGAAACAAAGAAAGATTTGT AAAAAGAAGACAACGGCTTATTGGTCCCAAAGGATCTACATTGAAGGCATTGGAACTCTT AACAAACTGTTACATTATGGTTCAGGGAAACACGGTTTCAGCCATTGGACCTTTTAGTGG CTTAAAAGAGGTTCGAAAAGTAGTCCTAGACACCATGAAGAATATTCATCCAATTTATAA CATTAAAACCTTAATGATTAAACGAGAACTGGCAAAAGATTCGGAGTTAAGATCACAGAG TTGGGAGAGATTTTTGCCTCAGTTCAAGCACAAAAATGTGAATAAACGCAAAGAACCAAA GAAAAAGACTACTAAGAAAGAGTATACACCATTCCCACCACCACAGCCAGAAAGTCAGAT TGATAAAGAATTGGCTAGTGGTGAATACTTTTTGAAGGCAAGTCAAAAGAAGAGACAGAA AATGGAAGCAATAAAGGCTAAACAAGCTGAAGCTCTTAGTAAGAGACAAGAGGAAAGAAA CAAAGCTTTTATTCCACCTAAAGAGAAACCAGTTGTGAAACCTAAGGAAGCTTCTACTGA AACTAAAATTGATGTGGCCACCATCAAGGAAAAGGTTAAGAAAGCAAAGAGTAAGAAACT GGGAGCTCTTACAGCTGAAGAAGTTAAGCTTAAAATGGAAGCAGATGAAAAGAAAAAGAA GAAAAAAAAGTAGCAAAGACCAAAGGCCGAAACTCCTGAACTAGAATGTATTAAGCTATC TCCTTTTGTAAAGGATTTTGAGATACTAGGGCATTAGTTGCCCTGTGAAAGGTAATACAC TGATCACATTTTTCTGAGTTTGTTTTGTTCTTGATATAAAGTGTTTACATAAACAGCTAT TCTTTATAAATTACTGCATTCTCCATAATTTTTTTGAAAAATTTTATACAAGAAAGTGGT ATAAATGTGTTTATATGCATTGCAGCTAGTCTGTTCCAGGCAGGTTTTGCCTAAGAATGA TTTTAGGAGTAATTCTATATAGGTTGTATTTTGGGAATATGGCTATTGTAATTACCCATC CAGTCCAGGTGTCTGATGCCAGACTTGGATTTGATAAATAATTTGGTTTTGTGGAAGATA ATTTTTCAGTGCTTTAATGATAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTATCGCCGGAAGCAGTTTGAAGATGGCGTCCTCCCAGCAGAATGCTCCGGCTGCAGT TCGTCGTCAGAAGCCGAAGCCAGAGAATCGAGATGAATCAGAACTCCTCACTGTTCCCGA TGGTTGGAAGGAGCCAGCTTTTTCCAAAGAGGACAATCCCAGAGGACTCTTGGAGGAGAG CAGTTTTGCAACTTTGTTCCCAAAATACAGAGAGGCTTACTTGAAAGAGTGCTGGCCATT GGTACAGAAAGCCTTGAATGAACATCATGTTAATGCAACTCTGGACCTGATTGAGGGAAG CATGACTGTCTGTACAACAAAGAAGACTTTTGATCCATACATCATCATTAGGGCCAGAGA CCTAATAAAACTCTTAGCAAGGAGTGTTTCATTTGAACAGGCAGTACGAATTCTTCAGGA TGATGTTGCATGTGACATCATTAAAATAGGTTCTTTAGTAAGAAACAAAGAAAGATTTGT AAAAAGAAGACAACGGCTTATTGGTCCCAAAGGATCTACATTGAAGGCATTGGAACTCTT AACAAACTGTTACATTATGGTTCAGGGAAACACGGTTTCAGCCATTGGACCTTTTAGTGG CTTAAAAGAGGTTCGAAAAGTAGTCCTAGACACCATGAAGAATATTCATCCAATTTATAA CATTAAAACCTTAATGATTAAACGAGAACTGGCAAAAGATTCGGAGTTAAGATCACAGAG TTGGGAGAGATTTTTGCCTCAGTTCAAGCACAAAAATGTGAATAAACGCAAAGAACCAAA GAAAAAGACTACTAAGAAAGAGTATACACCATTCCCACCACCACAGCCAGAAAGTCAGAT TGATAAAGAATTGGCTAGTGGTGAATACTTTTTGAAGGCAAGTCAAAAGAAGAGACAGAA AATGGAAGCAATAAAGGCTAAACAAGCTGAAGCTCTTAGTAAGAGACAAGAGGAAAGAAA CAAAGCTTTTATTCCACCTAAAGAGAAACCAGTTGTGAAACCTAAGGAAGCTTCTACTGA AACTAAAATTGATGTGGCCACCATCAAGGAAAAGGTTAAGAAAGCAAAGAGTAAGAAACT GGGAGCTCTTACAGCTGAAGAAGTTAAGCTTAAAATGGAAGCAGATGAAAAGAAAAAGAA GAAAAAAAAGTAGCAAAGACCAAAGGCCGAAACTCCTGAACTAGAATGTATTAAGCTATC TCCTTTTGTAAAGGATTTTGAGATACTAGGGCATTAGTTGCCCTGTGAAAGGTAATACAC TGATCACATTTTTCTGAGTTTGTTTTGTTCTTGATATAAAGTGTTTACATAAACAGCTAT TCTTTATAAATTACTGCATTCTCCATAATTTTTTTGAAAAATTTTATACAAGAAAGTGGT ATAAATGTGTTTATATGCATTGCAGCTAGTCTGTTCCAGGCAGGTTTTGCCTAAGAATGA TTTTAGGAGTAATTCTATATAGGTTGTATTTTGGGAATATGGCTATTGTAATTACCCATC CAGTCCAGGTGTCTGATGCCAGACTTGGATTTGATAAATAATTTGGTTTTGTGGAAGATA ATTTTTCAGTGCTTTAATGATAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 396-527, + strand, RNAz p=0.962717 | |
| 396-527, - strand, RNAz p=0.962717 | |
| 396-527, + strand, RNAz p=0.997246 | |
| 396-527, - strand, RNAz p=0.997246 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 396-527, + strand, RNAz p=0.962717 | |
| 396-527, - strand, RNAz p=0.962717 | |
| 396-527, + strand, RNAz p=0.997246 | |
| 396-527, - strand, RNAz p=0.997246 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 91-265, gnl|bosTau2|chr5 (1796909-1796735) | |
| 91-265, gnl|Hg17|chr12 (74188495-74188321) | |
| 91-265, gnl|Mm7|chr10 (111515758-111515932) | |
| 396-527, gnl|bosTau2|chr5 (1794856-1794725) | |
| 396-527, gnl|canFam2|chr23 (4840806-4840713) | |
| 396-527, gnl|danRer3|chrNA (217488150-217488058) | |
| 396-527, gnl|dasNov1|scaffold_10997 (31447-31540) | |
| 396-527, gnl|echTel1|scaffold_243648 (4072-4160) | |
| 396-527, gnl|Hg17|chr12 (74186661-74186530) | |
| 396-527, gnl|hg17|chr13 (19543040-19543128) | |
| 396-527, gnl|loxAfr1|scaffold_43397 (33341-33248) | |
| 396-527, gnl|mm7|chr10 (111517514-111517421) | |
| 396-527, gnl|Mm7|chr10 (111517383-111517514) | |
| 396-527, gnl|monDom2|scaffold_81 (1662678-1662585) | |
| 396-527, gnl|oryCun1|scaffold_185211 (2954-3047) | |
| 396-527, gnl|panTro1|chr14 (18430062-18430150) | |
| 396-527, gnl|rheMac2|chr17 (1429451-1429363) | |
| 396-527, gnl|rn3|chr7 (51094906-51094813) | |
| 396-527, gnl|xenTro1|scaffold_629 (543307-543400) | |
| 665-838, gnl|bosTau2|chr5 (1792657-1792484) | |
| 665-838, gnl|canFam2|chr15 (21705667-21705854) | |
| 665-838, gnl|danRer3|chrNA (217489051-217488864) | |
| 665-838, gnl|dasNov1|scaffold_10997 (28878-29065) | |
| 665-838, gnl|echTel1|scaffold_226878 (827-639) | |
| 665-838, gnl|fr1|chrUn (209060748-209060921) | |
| 665-838, gnl|galGal2|chr1 (34680685-34680871) | |
| 665-838, gnl|hg17|chr12 (74183940-74184128) | |
| 665-838, gnl|Hg17|chr12 (74184124-74183951) | |
| 665-838, gnl|mm7|chr10 (111520346-111520158) | |
| 665-838, gnl|Mm7|chr10 (111520160-111520333) | |
| 665-838, gnl|monDom2|scaffold_36 (7867522-7867709) | |
| 665-838, gnl|panTro1|chr10 (75910856-75911044) | |
| 665-838, gnl|rheMac2|chr11 (72541143-72541331) | |
| 665-838, gnl|rn3|chr7 (51097212-51097024) | |
| 665-838, gnl|tetNig1|chrUn_random (123116311-123116122) | |
| 665-838, gnl|xenTro1|scaffold_629 (542356-542534) | |
| 1009-1467, gnl|bosTau2|chr5 (1787617-1787189) | |
| 1009-1467, gnl|Hg17|chr12 (74180000-74179594) | |
| 1009-1467, gnl|Mm7|chr10 (111524813-111525192) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-265, gnl|bosTau2|chr5 (1796909-1796735) | |
| 91-265, gnl|Hg17|chr12 (74188495-74188321) | |
| 91-265, gnl|Mm7|chr10 (111515758-111515932) | |
| 396-527, gnl|bosTau2|chr5 (1794856-1794725) | |
| 396-527, gnl|canFam2|chr23 (4840806-4840713) | |
| 396-527, gnl|danRer3|chrNA (217488150-217488058) | |
| 396-527, gnl|dasNov1|scaffold_10997 (31447-31540) | |
| 396-527, gnl|echTel1|scaffold_243648 (4072-4160) | |
| 396-527, gnl|Hg17|chr12 (74186661-74186530) | |
| 396-527, gnl|hg17|chr13 (19543040-19543128) | |
| 396-527, gnl|loxAfr1|scaffold_43397 (33341-33248) | |
| 396-527, gnl|mm7|chr10 (111517514-111517421) | |
| 396-527, gnl|Mm7|chr10 (111517383-111517514) | |
| 396-527, gnl|monDom2|scaffold_81 (1662678-1662585) | |
| 396-527, gnl|oryCun1|scaffold_185211 (2954-3047) | |
| 396-527, gnl|panTro1|chr14 (18430062-18430150) | |
| 396-527, gnl|rheMac2|chr17 (1429451-1429363) | |
| 396-527, gnl|rn3|chr7 (51094906-51094813) | |
| 396-527, gnl|xenTro1|scaffold_629 (543307-543400) | |
| 665-838, gnl|bosTau2|chr5 (1792657-1792484) | |
| 665-838, gnl|canFam2|chr15 (21705667-21705854) | |
| 665-838, gnl|danRer3|chrNA (217489051-217488864) | |
| 665-838, gnl|dasNov1|scaffold_10997 (28878-29065) | |
| 665-838, gnl|echTel1|scaffold_226878 (827-639) | |
| 665-838, gnl|fr1|chrUn (209060748-209060921) | |
| 665-838, gnl|galGal2|chr1 (34680685-34680871) | |
| 665-838, gnl|hg17|chr12 (74183940-74184128) | |
| 665-838, gnl|Hg17|chr12 (74184124-74183951) | |
| 665-838, gnl|mm7|chr10 (111520346-111520158) | |
| 665-838, gnl|Mm7|chr10 (111520160-111520333) | |
| 665-838, gnl|monDom2|scaffold_36 (7867522-7867709) | |
| 665-838, gnl|panTro1|chr10 (75910856-75911044) | |
| 665-838, gnl|rheMac2|chr11 (72541143-72541331) | |
| 665-838, gnl|rn3|chr7 (51097212-51097024) | |
| 665-838, gnl|tetNig1|chrUn_random (123116311-123116122) | |
| 665-838, gnl|xenTro1|scaffold_629 (542356-542534) | |
| 1009-1467, gnl|bosTau2|chr5 (1787617-1787189) | |
| 1009-1467, gnl|Hg17|chr12 (74180000-74179594) | |
| 1009-1467, gnl|Mm7|chr10 (111524813-111525192) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| lin (0.291206) | |
| tra (0.246184) | |
| gul (0.177588) | |
| fco (0.157208) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.291206) | |
| tra (0.246184) | |
| gul (0.177588) | |
| fco (0.157208) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| jca (0.11396) |