Ss1.1-Lng1-LNG010041B10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGCACGGGAGAGCCAGTGTGGGGCTGATAACGCAGCGGACGCGTTGATGGCAGCCTTG CCCAGAGAGACCCACACTTAACTTGCAGCTGCCTCCCAAACCGGGTTTCAAGATGTCCAC GCCCCGGGTGACAGCCGGCGGGGCGCTGCCCTGGGCTCGGGCGGAGATGCTGAACAGCAG CCTGCAGTGAGAGCCCGCCGCCGCGCTCCCGCTTCCCTTTTTGACAGTAACGGCACAGCC AACAAGATGAACGGCGCTTTGGATCACTCAGACCAACCAGACCCAGATGCCATTAAGATG TTTGTCGGACAGATCCCCCGGTCCTGGTCGGAAAAGGAGCTGAAAGAACTTTTTGAGCCT TACGGAGCCGTCTACCAGATCAACGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAGT AAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAAGCTGCACTTGAGGCCCAGAATGCA CTGCACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGATGAAACCTGCAGAC AGTGAAAAATCAAACGCCGTGGAAGACAGAAAATTGTTCATAGGAATGGTTTCGAAGAAA TGCAACGAGAATGATATCCGGGTGATGTTTTCTCCGTTTGGCCAGATCGAGGAGTGCCGG ATTCTCCGGGGGCCCGACGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACAAGG GCAATGGCACAGAATGCAATCAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCT TCACCGATCGTGGTGAAGTTCGCGGACACTCAGAAGGACAAGGAGCAGAGGCGCCTCCAG CAGCAGCTGGCACAGCAGATGCAACAGCTCAACACTGCCACCTGGGGGAACCTGACGGGT CTGGGCGGCCTCACCCCGCAGTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAAC CTGGGTGCGTTCAGTGGCATTCAGCAAATGGCTGGCATGAATGCTTTACAGTTACAGAAT CTGGCAACGCTGGCAGCAGCTGCAGCCGCGGCCCAGACCTCAGCCACCACCACCAATGCA AACCCTCTCTCCACCACGAGCAGCGCCCTGGGAGCCCTCACCAGTCCTGTGGCTGCTTCC ACTCCCAACTCCACCGCCGGTGCAGCCATGAACTCTCTGACCTCCCTGGGGACTCTGCAA GGACTGGCGGGAGCCACGGTCGGACTGAATAACATTAATGCACTGGCAGGTATGGCGGCT CTGAACGGAGGCCTCGGCGCCACGGGCTTGACGAACGGCACGGCGGGCACCATGGACGCG CTCACGCAGGCCTACTCAGGGATCCAGCAGTACGCGGCCGCCGCGCTGCCCACGCTCTAC AGCCAGAGCCTGCTGCAGCAGCAGGGCGCGGCCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGCACGGGAGAGCCAGTGTGGGGCTGATAACGCAGCGGACGCGTTGATGGCAGCCTTG CCCAGAGAGACCCACACTTAACTTGCAGCTGCCTCCCAAACCGGGTTTCAAGATGTCCAC GCCCCGGGTGACAGCCGGCGGGGCGCTGCCCTGGGCTCGGGCGGAGATGCTGAACAGCAG CCTGCAGTGAGAGCCCGCCGCCGCGCTCCCGCTTCCCTTTTTGACAGTAACGGCACAGCC AACAAGATGAACGGCGCTTTGGATCACTCAGACCAACCAGACCCAGATGCCATTAAGATG TTTGTCGGACAGATCCCCCGGTCCTGGTCGGAAAAGGAGCTGAAAGAACTTTTTGAGCCT TACGGAGCCGTCTACCAGATCAACGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAGT AAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAAGCTGCACTTGAGGCCCAGAATGCA CTGCACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGATGAAACCTGCAGAC AGTGAAAAATCAAACGCCGTGGAAGACAGAAAATTGTTCATAGGAATGGTTTCGAAGAAA TGCAACGAGAATGATATCCGGGTGATGTTTTCTCCGTTTGGCCAGATCGAGGAGTGCCGG ATTCTCCGGGGGCCCGACGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACAAGG GCAATGGCACAGAATGCAATCAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCT TCACCGATCGTGGTGAAGTTCGCGGACACTCAGAAGGACAAGGAGCAGAGGCGCCTCCAG CAGCAGCTGGCACAGCAGATGCAACAGCTCAACACTGCCACCTGGGGGAACCTGACGGGT CTGGGCGGCCTCACCCCGCAGTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAAC CTGGGTGCGTTCAGTGGCATTCAGCAAATGGCTGGCATGAATGCTTTACAGTTACAGAAT CTGGCAACGCTGGCAGCAGCTGCAGCCGCGGCCCAGACCTCAGCCACCACCACCAATGCA AACCCTCTCTCCACCACGAGCAGCGCCCTGGGAGCCCTCACCAGTCCTGTGGCTGCTTCC ACTCCCAACTCCACCGCCGGTGCAGCCATGAACTCTCTGACCTCCCTGGGGACTCTGCAA GGACTGGCGGGAGCCACGGTCGGACTGAATAACATTAATGCACTGGCAGGTATGGCGGCT CTGAACGGAGGCCTCGGCGCCACGGGCTTGACGAACGGCACGGCGGGCACCATGGACGCG CTCACGCAGGCCTACTCAGGGATCCAGCAGTACGCGGCCGCCGCGCTGCCCACGCTCTAC AGCCAGAGCCTGCTGCAGCAGCAGGGCGCGGCCGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 991-1083, - strand, RNAz p=0.857063 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 991-1083, - strand, RNAz p=0.857063 |
| Aligned organism(s): 82 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
| 1-205, gnl|bosTau2|chr13 (5801607-5801404) | |
| 1-205, gnl|Hg17|chr10 (11247071-11247265) | |
| 1-205, gnl|Mm7|chr2 (6639285-6639074) | |
| 241-426, gnl|bosTau2|chr15 (48838835-48839020) | |
| 241-426, gnl|canFam2|chr18 (45197059-45196846) | |
| 241-426, gnl|canFam2|chr2 (28004845-28004661) | |
| 241-426, gnl|danRer3|chr16 (27250422-27250238) | |
| 241-426, gnl|danRer3|chr7 (28758381-28758605) | |
| 241-426, gnl|dasNov1|scaffold_255114 (3786-3607) | |
| 241-426, gnl|dasNov1|scaffold_62459 (1967-2147) | |
| 241-426, gnl|echTel1|scaffold_317777 (360-176) | |
| 241-426, gnl|echTel1|scaffold_317777 (181-373) | |
| 241-426, gnl|fr1|chrUn (104066543-104066362) | |
| 241-426, gnl|fr1|chrUn (314566027-314566222) | |
| 241-426, gnl|galGal2|chr1 (4465021-4464838) | |
| 241-426, gnl|galGal2|chr5 (20124688-20124472) | |
| 241-426, gnl|hg17|chr10 (11247475-11247659) | |
| 241-426, gnl|hg17|chr11 (47466956-47467173) | |
| 241-426, gnl|Hg17|chr11 (47467148-47466963) | |
| 241-426, gnl|loxAfr1|scaffold_7460 (56582-56766) | |
| 241-426, gnl|loxAfr1|scaffold_7460 (56768-56552) | |
| 241-426, gnl|mm7|chr2 (6638868-6638684) | |
| 241-426, gnl|mm7|chr2 (90849494-90849277) | |
| 241-426, gnl|Mm7|chr2 (90849300-90849485) | |
| 241-426, gnl|monDom2|scaffold_33 (13328468-13328288) | |
| 241-426, gnl|monDom2|scaffold_33 (13328281-13328498) | |
| 241-426, gnl|oryCun1|scaffold_206007 (142852-143036) | |
| 241-426, gnl|oryCun1|scaffold_206007 (143031-142839) | |
| 241-426, gnl|panTro1|chr8 (11387707-11387891) | |
| 241-426, gnl|panTro1|chr9 (47989803-47990020) | |
| 241-426, gnl|rheMac2|chr14 (24625538-24625321) | |
| 241-426, gnl|rheMac2|chr9 (11408690-11408874) | |
| 241-426, gnl|rn3|chr17 (82874584-82874768) | |
| 241-426, gnl|rn3|chr3 (75257500-75257283) | |
| 241-426, gnl|tetNig1|chr13 (9851210-9851022) | |
| 241-426, gnl|tetNig1|chrUn_random (29893505-29893685) | |
| 241-426, gnl|xenTro1|scaffold_314 (485767-485584) | |
| 241-426, gnl|xenTro1|scaffold_552 (30921-30714) | |
| 556-692, gnl|bosTau2|chr13 (5698180-5698044) | |
| 556-692, gnl|canFam2|chr2 (27917350-27917180) | |
| 556-692, gnl|danRer3|chr4 (26845755-26845896) | |
| 556-692, gnl|dasNov1|scaffold_832 (74851-75020) | |
| 556-692, gnl|echTel1|scaffold_324151 (8267-8437) | |
| 556-692, gnl|fr1|chrUn (104042576-104042410) | |
| 556-692, gnl|galGal2|chr1 (4396116-4395946) | |
| 556-692, gnl|hg17|chr10 (11339706-11339876) | |
| 556-692, gnl|Hg17|chr10 (11339706-11339842) | |
| 556-692, gnl|loxAfr1|scaffold_1017 (84206-84036) | |
| 556-692, gnl|mm7|chr2 (6533098-6532928) | |
| 556-692, gnl|Mm7|chr2 (6533096-6532960) | |
| 556-692, gnl|monDom2|scaffold_30 (9862135-9862305) | |
| 556-692, gnl|oryCun1|scaffold_202279 (129063-128894) | |
| 556-692, gnl|panTro1|chr8 (11480610-11480780) | |
| 556-692, gnl|rheMac2|chr9 (11499667-11499837) | |
| 556-692, gnl|rn3|chr17 (82969735-82969905) | |
| 556-692, gnl|tetNig1|chrUn_random (29908013-29908157) | |
| 556-692, gnl|xenTro1|scaffold_314 (403455-403285) | |
| 756-930, gnl|bosTau2|chr13 (5685333-5685161) | |
| 756-930, gnl|Hg17|chr10 (11352621-11352793) | |
| 756-930, gnl|Mm7|chr2 (6521469-6521297) | |
| 991-1127, gnl|bosTau2|chr13 (5672060-5671924) | |
| 991-1127, gnl|canFam2|chr2 (27889053-27888895) | |
| 991-1127, gnl|danRer3|chr4 (26875561-26875715) | |
| 991-1127, gnl|dasNov1|scaffold_2577 (42722-42594) | |
| 991-1127, gnl|echTel1|scaffold_308749 (117707-117844) | |
| 991-1127, gnl|fr1|chrUn (286524931-286525077) | |
| 991-1127, gnl|galGal2|chr1 (4368095-4367943) | |
| 991-1127, gnl|hg17|chr10 (11370369-11370527) | |
| 991-1127, gnl|Hg17|chr10 (11370383-11370519) | |
| 991-1127, gnl|loxAfr1|scaffold_21938 (22288-22131) | |
| 991-1127, gnl|mm7|chr2 (6503401-6503243) | |
| 991-1127, gnl|Mm7|chr2 (6503385-6503249) | |
| 991-1127, gnl|monDom2|scaffold_30 (9892484-9892645) | |
| 991-1127, gnl|oryCun1|scaffold_179957 (34732-34868) | |
| 991-1127, gnl|panTro1|chr8 (11511267-11511425) | |
| 991-1127, gnl|rheMac2|chr9 (11528486-11528644) | |
| 991-1127, gnl|rn3|chr17 (82996719-82996877) | |
| 991-1127, gnl|tetNig1|chrUn_random (29921699-29921856) | |
| 991-1127, gnl|xenTro1|scaffold_314 (375761-375604) | |
| 1237-1416, gnl|bosTau2|chr13 (5650755-5650578) | |
| 1237-1416, gnl|Hg17|chr10 (11403165-11403342) | |
| 1237-1416, gnl|Mm7|chr2 (6471248-6471071) |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-205, gnl|bosTau2|chr13 (5801607-5801404) | |
| 1-205, gnl|Hg17|chr10 (11247071-11247265) | |
| 1-205, gnl|Mm7|chr2 (6639285-6639074) | |
| 241-426, gnl|bosTau2|chr15 (48838835-48839020) | |
| 241-426, gnl|canFam2|chr18 (45197059-45196846) | |
| 241-426, gnl|canFam2|chr2 (28004845-28004661) | |
| 241-426, gnl|danRer3|chr16 (27250422-27250238) | |
| 241-426, gnl|danRer3|chr7 (28758381-28758605) | |
| 241-426, gnl|dasNov1|scaffold_255114 (3786-3607) | |
| 241-426, gnl|dasNov1|scaffold_62459 (1967-2147) | |
| 241-426, gnl|echTel1|scaffold_317777 (360-176) | |
| 241-426, gnl|echTel1|scaffold_317777 (181-373) | |
| 241-426, gnl|fr1|chrUn (104066543-104066362) | |
| 241-426, gnl|fr1|chrUn (314566027-314566222) | |
| 241-426, gnl|galGal2|chr1 (4465021-4464838) | |
| 241-426, gnl|galGal2|chr5 (20124688-20124472) | |
| 241-426, gnl|hg17|chr10 (11247475-11247659) | |
| 241-426, gnl|hg17|chr11 (47466956-47467173) | |
| 241-426, gnl|Hg17|chr11 (47467148-47466963) | |
| 241-426, gnl|loxAfr1|scaffold_7460 (56582-56766) | |
| 241-426, gnl|loxAfr1|scaffold_7460 (56768-56552) | |
| 241-426, gnl|mm7|chr2 (6638868-6638684) | |
| 241-426, gnl|mm7|chr2 (90849494-90849277) | |
| 241-426, gnl|Mm7|chr2 (90849300-90849485) | |
| 241-426, gnl|monDom2|scaffold_33 (13328468-13328288) | |
| 241-426, gnl|monDom2|scaffold_33 (13328281-13328498) | |
| 241-426, gnl|oryCun1|scaffold_206007 (142852-143036) | |
| 241-426, gnl|oryCun1|scaffold_206007 (143031-142839) | |
| 241-426, gnl|panTro1|chr8 (11387707-11387891) | |
| 241-426, gnl|panTro1|chr9 (47989803-47990020) | |
| 241-426, gnl|rheMac2|chr14 (24625538-24625321) | |
| 241-426, gnl|rheMac2|chr9 (11408690-11408874) | |
| 241-426, gnl|rn3|chr17 (82874584-82874768) | |
| 241-426, gnl|rn3|chr3 (75257500-75257283) | |
| 241-426, gnl|tetNig1|chr13 (9851210-9851022) | |
| 241-426, gnl|tetNig1|chrUn_random (29893505-29893685) | |
| 241-426, gnl|xenTro1|scaffold_314 (485767-485584) | |
| 241-426, gnl|xenTro1|scaffold_552 (30921-30714) | |
| 556-692, gnl|bosTau2|chr13 (5698180-5698044) | |
| 556-692, gnl|canFam2|chr2 (27917350-27917180) | |
| 556-692, gnl|danRer3|chr4 (26845755-26845896) | |
| 556-692, gnl|dasNov1|scaffold_832 (74851-75020) | |
| 556-692, gnl|echTel1|scaffold_324151 (8267-8437) | |
| 556-692, gnl|fr1|chrUn (104042576-104042410) | |
| 556-692, gnl|galGal2|chr1 (4396116-4395946) | |
| 556-692, gnl|hg17|chr10 (11339706-11339876) | |
| 556-692, gnl|Hg17|chr10 (11339706-11339842) | |
| 556-692, gnl|loxAfr1|scaffold_1017 (84206-84036) | |
| 556-692, gnl|mm7|chr2 (6533098-6532928) | |
| 556-692, gnl|Mm7|chr2 (6533096-6532960) | |
| 556-692, gnl|monDom2|scaffold_30 (9862135-9862305) | |
| 556-692, gnl|oryCun1|scaffold_202279 (129063-128894) | |
| 556-692, gnl|panTro1|chr8 (11480610-11480780) | |
| 556-692, gnl|rheMac2|chr9 (11499667-11499837) | |
| 556-692, gnl|rn3|chr17 (82969735-82969905) | |
| 556-692, gnl|tetNig1|chrUn_random (29908013-29908157) | |
| 556-692, gnl|xenTro1|scaffold_314 (403455-403285) | |
| 756-930, gnl|bosTau2|chr13 (5685333-5685161) | |
| 756-930, gnl|Hg17|chr10 (11352621-11352793) | |
| 756-930, gnl|Mm7|chr2 (6521469-6521297) | |
| 991-1127, gnl|bosTau2|chr13 (5672060-5671924) | |
| 991-1127, gnl|canFam2|chr2 (27889053-27888895) | |
| 991-1127, gnl|danRer3|chr4 (26875561-26875715) | |
| 991-1127, gnl|dasNov1|scaffold_2577 (42722-42594) | |
| 991-1127, gnl|echTel1|scaffold_308749 (117707-117844) | |
| 991-1127, gnl|fr1|chrUn (286524931-286525077) | |
| 991-1127, gnl|galGal2|chr1 (4368095-4367943) | |
| 991-1127, gnl|hg17|chr10 (11370369-11370527) | |
| 991-1127, gnl|Hg17|chr10 (11370383-11370519) | |
| 991-1127, gnl|loxAfr1|scaffold_21938 (22288-22131) | |
| 991-1127, gnl|mm7|chr2 (6503401-6503243) | |
| 991-1127, gnl|Mm7|chr2 (6503385-6503249) | |
| 991-1127, gnl|monDom2|scaffold_30 (9892484-9892645) | |
| 991-1127, gnl|oryCun1|scaffold_179957 (34732-34868) | |
| 991-1127, gnl|panTro1|chr8 (11511267-11511425) | |
| 991-1127, gnl|rheMac2|chr9 (11528486-11528644) | |
| 991-1127, gnl|rn3|chr17 (82996719-82996877) | |
| 991-1127, gnl|tetNig1|chrUn_random (29921699-29921856) | |
| 991-1127, gnl|xenTro1|scaffold_314 (375761-375604) | |
| 1237-1416, gnl|bosTau2|chr13 (5650755-5650578) | |
| 1237-1416, gnl|Hg17|chr10 (11403165-11403342) | |
| 1237-1416, gnl|Mm7|chr2 (6471248-6471071) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| clu (0.119646) | |
| ecc (0.115035) |