Non-Coding RNA Search

Ss1.1-Lng1-LNG010041E06.5

Sequence:


               
               GGCATTTATTGCCCTTCCATCAATCTTGCAAAGAATCTTACAGGATCCAGTTTATGGAAA
AGGAAAACTTGGAGAAATCCAGGGACTTATTCTGGGAATGTTGGATACCTTTAACTATGA
ACAGACCCTGCTGGAAACAACTACCAGCCTTCTAAACCAGGATCTCCATTGGTCATTGTG
TAACCTGAGAGCGTCGGTCACCAGAGGACTGAATCCCAAGCAGGATTACTGCTCTATTTG
TTTGCAGCAGTACAAGAGACGCCAGGAAATGGCCGATGAAATCATTGTCTTTAGCTGTGG
CCATTTGTATCACTCATTCTGTCTGCAAAACAAAGAGTGCACTGTAGAAATTGAGGGTCA
AACAAGATGGACATGCTACAAATGCAGCTCAAGTAACAAAGTAGGAAAGTTAAGTGAAAA
TTCATCTGAAATTAAAAAGGGAAGGATAACCCCATCACAGGTAAAAATGTCCCCATCCTG
CCATCCATCCAAAGGGGATCCCACCGTTAAGAAGGCCATCTCAGAACCTGTTCTGGATCC
ACAGCAAATCCAAGCATTCGATCAGCTTTGTCATCTCTACCGAGGAAGTTCCAGGCTGGC
TCTCCTTACAGAGCTCTCCCAGAACCGCAGCGGCGAGAGCTGCAGGCCGTTTGGTGGCTC
CCAGAGTGGCCCAGCCTTCAACAGCATCTTCCAGAAGGAGAACTTCCAGTTGCAGCTCAT
TCCTCCGCCTGTGACCGAGGACTGAAGCCTCTCCTGGGGCCGCGCCCTGCTGGCCTGCTC
ACCAGCCCGAGACTCCATCTCTTCCTGATGTTGCCGCAGCATCAGCACCAGACTGGTTGA
TTGTTTTGCCTCCTAAGCAAATGATTGTCACATATCTCCATCCAGTTATTTAAGAAAATG
TGTTTTGCCTTTTGGGATGGTCTCAGTTTCCCCTGAAGCGTAGAGAAGAGGCGGAGCCCC
CGCAGGCGGCGTTCCAAGCCTGTCACACCTGATCTCCTCCAGCTGGTGGCCAACACTGAG
GGCTGTCACCTCCTGCTGCCTTTGGGACCAGGACCAGCACAGTCGGGACTTGTGGGCACT
GGGCTGCAGCACAGCTGAAACCTGCGTTGGAGGCAGGGAAAGGCCTGAGGGGGCTGGGGC
ACCTCCCTTTCTGTGTGTTTATGCTAAACCCGTTTGAGTGTAAGACGTGCCGTGTCCAAC
AATACATGCCTCCTGTTAAGCCCTGCAGGACTGCTGGCTGTCTCGCTATCAAGTCATAAA
GGACGTTGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATTTATTGCCCTTCCATCAATCTTGCAAAGAATCTTACAGGATCCAGTTTATGGAAA
AGGAAAACTTGGAGAAATCCAGGGACTTATTCTGGGAATGTTGGATACCTTTAACTATGA
ACAGACCCTGCTGGAAACAACTACCAGCCTTCTAAACCAGGATCTCCATTGGTCATTGTG
TAACCTGAGAGCGTCGGTCACCAGAGGACTGAATCCCAAGCAGGATTACTGCTCTATTTG
TTTGCAGCAGTACAAGAGACGCCAGGAAATGGCCGATGAAATCATTGTCTTTAGCTGTGG
CCATTTGTATCACTCATTCTGTCTGCAAAACAAAGAGTGCACTGTAGAAATTGAGGGTCA
AACAAGATGGACATGCTACAAATGCAGCTCAAGTAACAAAGTAGGAAAGTTAAGTGAAAA
TTCATCTGAAATTAAAAAGGGAAGGATAACCCCATCACAGGTAAAAATGTCCCCATCCTG
CCATCCATCCAAAGGGGATCCCACCGTTAAGAAGGCCATCTCAGAACCTGTTCTGGATCC
ACAGCAAATCCAAGCATTCGATCAGCTTTGTCATCTCTACCGAGGAAGTTCCAGGCTGGC
TCTCCTTACAGAGCTCTCCCAGAACCGCAGCGGCGAGAGCTGCAGGCCGTTTGGTGGCTC
CCAGAGTGGCCCAGCCTTCAACAGCATCTTCCAGAAGGAGAACTTCCAGTTGCAGCTCAT
TCCTCCGCCTGTGACCGAGGACTGAAGCCTCTCCTGGGGCCGCGCCCTGCTGGCCTGCTC
ACCAGCCCGAGACTCCATCTCTTCCTGATGTTGCCGCAGCATCAGCACCAGACTGGTTGA
TTGTTTTGCCTCCTAAGCAAATGATTGTCACATATCTCCATCCAGTTATTTAAGAAAATG
TGTTTTGCCTTTTGGGATGGTCTCAGTTTCCCCTGAAGCGTAGAGAAGAGGCGGAGCCCC
CGCAGGCGGCGTTCCAAGCCTGTCACACCTGATCTCCTCCAGCTGGTGGCCAACACTGAG
GGCTGTCACCTCCTGCTGCCTTTGGGACCAGGACCAGCACAGTCGGGACTTGTGGGCACT
GGGCTGCAGCACAGCTGAAACCTGCGTTGGAGGCAGGGAAAGGCCTGAGGGGGCTGGGGC
ACCTCCCTTTCTGTGTGTTTATGCTAAACCCGTTTGAGTGTAAGACGTGCCGTGTCCAAC
AATACATGCCTCCTGTTAAGCCCTGCAGGACTGCTGGCTGTCTCGCTATCAAGTCATAAA
GGACGTTGAGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12654357|gb|AAH01001.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12654357|gb|AAH01001.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               466-758, gnl|bosTau2|chr10 (22895519-22895809)
               

               
               466-758, gnl|Hg17|chr3 (186248967-186252534)
               

               
               466-758, gnl|Mm7|chr16 (21290101-21293715)
               


               
               776-1224, gnl|bosTau2|chr10 (22895861-22896283)
               

               
               776-1224, gnl|Hg17|chr3 (186252613-186253095)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               466-758, gnl|bosTau2|chr10 (22895519-22895809)
               

               
               466-758, gnl|Hg17|chr3 (186248967-186252534)
               

               
               466-758, gnl|Mm7|chr16 (21290101-21293715)
               


               
               776-1224, gnl|bosTau2|chr10 (22895861-22896283)
               

               
               776-1224, gnl|Hg17|chr3 (186252613-186253095)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               thg (0.253582)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	466-758, gnl\|bosTau2\|chr10 (22895519-22895809)
	466-758, gnl\|Hg17\|chr3 (186248967-186252534)
	466-758, gnl\|Mm7\|chr16 (21290101-21293715)

	776-1224, gnl\|bosTau2\|chr10 (22895861-22896283)
	776-1224, gnl\|Hg17\|chr3 (186252613-186253095)

	thg (0.253582)
	fty (0.17584)
	hyp (0.142837)
	eru (0.120048)
	ebs (0.118301)
	nbm (0.0993246)