Ss1.1-Lng1-LNG010042B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTAAGTTGGGCCAAAATGGCAGCCCTGGAGGAGGGATTCACGTTGACTGCGGTACCCCT GGGTTCTGGGCCTGACGGACCCCTAGGAGTGGAGCAGAGCGACAAAACAGACCAATTTCT AGTGACGGACAGCGGCAGGACGGTCATTCTCTATAAGGTTTCCGATCAGAAACCTTTGGG GAGCTGGTCAGTGAAACAAGGTCAAATTATAACATGTCCAGCTGTGTGCAACTTTCAAAC TGGAGAGTATATTGTTGTACACGATAATAAGGTCTTGAGGATATGGAATAATGAGGATGT AAACCTGGATAAAGTATTTAAAGCTACATTGTCGGCTGAGGTATATAGAATACATTCAGT ACAGGGGACAGAACCCTTGGTGCTATTCAAGGAAGGTGCCGTTCGTGGTTTAGAGGCCTT GCTTGCAGAGCCCCAGCAGAAAATCGAAACTGTTATCTCTGATGAAGAAGTGATTAAGTG GGCAAAGCTTTTCATGGTATTTAGGCATCCTGTGCTAATTTTTATTACCGAAAAGCATGG AAATTATTTTGCGTACGTACAGAAGTTTAGCTCACGTGTCCTATGTAAATATGCACTTTT ACTTGGACAAGAAGAAAAATCTGTTATACAGAGTTTGAGTATGTCTGTGGATCGGAAAGT CATCTCTCTGATGTCATTAAGCTCCGATGGGTGTGTATATGAGACCCTGATACCAATACA TCCAAGTGACCCATTTAAAAATCAGAGGGTAGTGAGGTCACTGCTGCTTAAGTCCGTAGT GTGTGGCAGTGCTCGAAGTGGCGTTGCATTCACTGTCCTGGATCAAGATCACATAGCAGT CCTGGGACCCCCACCATCAGCTTCTAAAGAATGCCTCTCCATTTGGAATACAAAATTTCA AACACTACAGACTTCAAGAGAGTTACCACAAGGAACCAGTGGTCAACTCTGGTATTACGG CGAAAATTTGTTTATACTGCATGGAAAATTTTTAACTGTAATTCCATACAAGTGTGAAGT GTCATCATTAGCAGGTGCTCTTGGGAAACTCAAGCATAGTCAAGATCCAGGCACTCATGC CATGCCTCATTTCGTAAACTGGGAAACATCACTGGGATGTGGACTCGGATCCCAGAACTC AGAGCAGTCAAAGAGAATTTTAAGGAGAAGGAAAATTGAAGTGAGTGCACAGCCAGAGGT TCCAGCATCCACACAGCTTTTAGCAACCGTACAGAAAGATTCAGAAAAACATATTGAAGT AGAACTACGTAAATTTTTGGCTGTTAAGCGGACACCTGACTTTCATACTGTCATTGGGGA TGTGATAATAGGCCTTCTGGGACGATGTAAAGCAGAACCATCATTTTATCCCCGAAACCC TCTGATGCAGCTTATCCAAACGCATGTGCTTTCTTACAGCTTGTGCCCTGGCTTAATGGA GGTTGCCCCGGAAAAGACAGATTTGCAGATCTTGCAGCTCTGCCTGCAGCAGTTCCCTGA CATTCCTGAGTCAGTCACCTGCGCTTGCTTAAAAATTTTCTTGAGCATTGGTGATGAGAG TCTTCAAGAAGCAGATATCAACGTGCAGTCAGCTTCTGACTATGGCGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTAAGTTGGGCCAAAATGGCAGCCCTGGAGGAGGGATTCACGTTGACTGCGGTACCCCT GGGTTCTGGGCCTGACGGACCCCTAGGAGTGGAGCAGAGCGACAAAACAGACCAATTTCT AGTGACGGACAGCGGCAGGACGGTCATTCTCTATAAGGTTTCCGATCAGAAACCTTTGGG GAGCTGGTCAGTGAAACAAGGTCAAATTATAACATGTCCAGCTGTGTGCAACTTTCAAAC TGGAGAGTATATTGTTGTACACGATAATAAGGTCTTGAGGATATGGAATAATGAGGATGT AAACCTGGATAAAGTATTTAAAGCTACATTGTCGGCTGAGGTATATAGAATACATTCAGT ACAGGGGACAGAACCCTTGGTGCTATTCAAGGAAGGTGCCGTTCGTGGTTTAGAGGCCTT GCTTGCAGAGCCCCAGCAGAAAATCGAAACTGTTATCTCTGATGAAGAAGTGATTAAGTG GGCAAAGCTTTTCATGGTATTTAGGCATCCTGTGCTAATTTTTATTACCGAAAAGCATGG AAATTATTTTGCGTACGTACAGAAGTTTAGCTCACGTGTCCTATGTAAATATGCACTTTT ACTTGGACAAGAAGAAAAATCTGTTATACAGAGTTTGAGTATGTCTGTGGATCGGAAAGT CATCTCTCTGATGTCATTAAGCTCCGATGGGTGTGTATATGAGACCCTGATACCAATACA TCCAAGTGACCCATTTAAAAATCAGAGGGTAGTGAGGTCACTGCTGCTTAAGTCCGTAGT GTGTGGCAGTGCTCGAAGTGGCGTTGCATTCACTGTCCTGGATCAAGATCACATAGCAGT CCTGGGACCCCCACCATCAGCTTCTAAAGAATGCCTCTCCATTTGGAATACAAAATTTCA AACACTACAGACTTCAAGAGAGTTACCACAAGGAACCAGTGGTCAACTCTGGTATTACGG CGAAAATTTGTTTATACTGCATGGAAAATTTTTAACTGTAATTCCATACAAGTGTGAAGT GTCATCATTAGCAGGTGCTCTTGGGAAACTCAAGCATAGTCAAGATCCAGGCACTCATGC CATGCCTCATTTCGTAAACTGGGAAACATCACTGGGATGTGGACTCGGATCCCAGAACTC AGAGCAGTCAAAGAGAATTTTAAGGAGAAGGAAAATTGAAGTGAGTGCACAGCCAGAGGT TCCAGCATCCACACAGCTTTTAGCAACCGTACAGAAAGATTCAGAAAAACATATTGAAGT AGAACTACGTAAATTTTTGGCTGTTAAGCGGACACCTGACTTTCATACTGTCATTGGGGA TGTGATAATAGGCCTTCTGGGACGATGTAAAGCAGAACCATCATTTTATCCCCGAAACCC TCTGATGCAGCTTATCCAAACGCATGTGCTTTCTTACAGCTTGTGCCCTGGCTTAATGGA GGTTGCCCCGGAAAAGACAGATTTGCAGATCTTGCAGCTCTGCCTGCAGCAGTTCCCTGA CATTCCTGAGTCAGTCACCTGCGCTTGCTTAAAAATTTTCTTGAGCATTGGTGATGAGAG TCTTCAAGAAGCAGATATCAACGTGCAGTCAGCTTCTGACTATGGCGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 86 entry(ies) | More info |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
| 1-159, gnl|bosTau2|chr19 (43723725-43723883) | |
| 1-159, gnl|canFam2|chr9 (15973296-15973051) | |
| 1-159, gnl|canFam2|chr9 (15973237-15973086) | |
| 1-159, gnl|dasNov1|scaffold_67005 (4028-3784) | |
| 1-159, gnl|dasNov1|scaffold_67005 (3970-3817) | |
| 1-159, gnl|echTel1|scaffold_285906 (1225-980) | |
| 1-159, gnl|echTel1|scaffold_285906 (1167-1015) | |
| 1-159, gnl|galGal2|chr18 (6858591-6858407) | |
| 1-159, gnl|hg17|chr17 (63144456-63144701) | |
| 1-159, gnl|Hg17|chr17 (63144510-63144668) | |
| 1-159, gnl|hg17|chrX (148953166-148953318) | |
| 1-159, gnl|mm7|chr11 (107298368-107298132) | |
| 1-159, gnl|mm7|chr11 (107298305-107298161) | |
| 1-159, gnl|Mm7|chr11 (107298314-107298156) | |
| 1-159, gnl|monDom2|scaffold_18 (17608632-17608401) | |
| 1-159, gnl|oryCun1|scaffold_205751 (141239-141477) | |
| 1-159, gnl|oryCun1|scaffold_205751 (141304-141448) | |
| 1-159, gnl|panTro1|chr19 (66421444-66421689) | |
| 1-159, gnl|panTro1|chrX (154174756-154174908) | |
| 1-159, gnl|rheMac2|chr16 (63061066-63061311) | |
| 1-159, gnl|rheMac2|chrX (148222073-148222225) | |
| 1-159, gnl|rn3|chr10 (96584001-96583766) | |
| 1-159, gnl|rn3|chr10 (96583939-96583795) | |
| 669-867, gnl|bosTau2|chr19 (43732637-43732835) | |
| 669-867, gnl|canFam2|chr9 (15961884-15961697) | |
| 669-867, gnl|echTel1|scaffold_216917 (2163-2341) | |
| 669-867, gnl|Hg17|chr17 (63153026-63153224) | |
| 669-867, gnl|hg17|chrX (148953838-148954025) | |
| 669-867, gnl|loxAfr1|scaffold_37187 (10515-10702) | |
| 669-867, gnl|mm7|chr11 (107290142-107289956) | |
| 669-867, gnl|Mm7|chr11 (107290154-107289956) | |
| 669-867, gnl|oryCun1|scaffold_205751 (148468-148653) | |
| 669-867, gnl|panTro1|chrX (154175428-154175615) | |
| 669-867, gnl|rheMac2|chrX (148222748-148222935) | |
| 669-867, gnl|rn3|chr10 (96576900-96576714) | |
| 947-1071, gnl|bosTau2|chr19 (43735398-43735522) | |
| 947-1071, gnl|canFam2|chr9 (15957775-15957637) | |
| 947-1071, gnl|canFam2|chr9 (15957755-15957634) | |
| 947-1071, gnl|danRer3|chrUn (151461063-151461202) | |
| 947-1071, gnl|dasNov1|scaffold_13173 (46423-46286) | |
| 947-1071, gnl|dasNov1|scaffold_13173 (46404-46283) | |
| 947-1071, gnl|echTel1|scaffold_216917 (7636-7781) | |
| 947-1071, gnl|echTel1|scaffold_216917 (7663-7784) | |
| 947-1071, gnl|hg17|chr17 (63162459-63162597) | |
| 947-1071, gnl|Hg17|chr17 (63162478-63162602) | |
| 947-1071, gnl|hg17|chrX (148954100-148954221) | |
| 947-1071, gnl|loxAfr1|scaffold_9668 (676-814) | |
| 947-1071, gnl|loxAfr1|scaffold_9668 (696-817) | |
| 947-1071, gnl|mm7|chr11 (107288145-107288016) | |
| 947-1071, gnl|mm7|chr11 (107288138-107288013) | |
| 947-1071, gnl|Mm7|chr11 (107288133-107288009) | |
| 947-1071, gnl|monDom2|scaffold_18 (17588714-17588572) | |
| 947-1071, gnl|monDom2|scaffold_18 (17588692-17588570) | |
| 947-1071, gnl|oryCun1|scaffold_205751 (154732-154870) | |
| 947-1071, gnl|oryCun1|scaffold_205751 (154750-154873) | |
| 947-1071, gnl|panTro1|chr19_random (50821497-50821635) | |
| 947-1071, gnl|panTro1|chrX (154175690-154175811) | |
| 947-1071, gnl|rheMac2|chr16 (63079144-63079281) | |
| 947-1071, gnl|rheMac2|chrX (148223010-148223135) | |
| 947-1071, gnl|rn3|chr10 (96574645-96574516) | |
| 947-1071, gnl|rn3|chr10 (96574638-96574516) | |
| 947-1071, gnl|tetNig1|chr18 (1242004-1242141) | |
| 1227-1419, gnl|bosTau2|chr19 (43737102-43737294) | |
| 1227-1419, gnl|canFam2|chr9 (15955043-15954865) | |
| 1227-1419, gnl|canFam2|chr9 (15954982-15954797) | |
| 1227-1419, gnl|dasNov1|scaffold_13173 (41268-41094) | |
| 1227-1419, gnl|dasNov1|scaffold_13173 (41211-41028) | |
| 1227-1419, gnl|fr1|chrUn (206048111-206047946) | |
| 1227-1419, gnl|hg17|chr17 (63164027-63164203) | |
| 1227-1419, gnl|Hg17|chr17 (63164078-63164270) | |
| 1227-1419, gnl|hg17|chrX (148954386-148954572) | |
| 1227-1419, gnl|loxAfr1|scaffold_9668 (2361-2534) | |
| 1227-1419, gnl|loxAfr1|scaffold_9668 (2421-2600) | |
| 1227-1419, gnl|mm7|chr11 (107284849-107284676) | |
| 1227-1419, gnl|mm7|chr11 (107284790-107284608) | |
| 1227-1419, gnl|Mm7|chr11 (107284796-107284607) | |
| 1227-1419, gnl|monDom2|scaffold_18 (17582619-17582441) | |
| 1227-1419, gnl|monDom2|scaffold_18 (17582559-17582383) | |
| 1227-1419, gnl|oryCun1|scaffold_205751 (156942-157118) | |
| 1227-1419, gnl|oryCun1|scaffold_205751 (157001-157186) | |
| 1227-1419, gnl|panTro1|chr19_random (50823065-50823241) | |
| 1227-1419, gnl|panTro1|chrX (154175977-154176164) | |
| 1227-1419, gnl|rheMac2|chr16 (63080685-63080862) | |
| 1227-1419, gnl|rheMac2|chrX (148223301-148223487) | |
| 1227-1419, gnl|rn3|chr10 (96571401-96571230) | |
| 1227-1419, gnl|rn3|chr10 (96571344-96571162) |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-159, gnl|bosTau2|chr19 (43723725-43723883) | |
| 1-159, gnl|canFam2|chr9 (15973296-15973051) | |
| 1-159, gnl|canFam2|chr9 (15973237-15973086) | |
| 1-159, gnl|dasNov1|scaffold_67005 (4028-3784) | |
| 1-159, gnl|dasNov1|scaffold_67005 (3970-3817) | |
| 1-159, gnl|echTel1|scaffold_285906 (1225-980) | |
| 1-159, gnl|echTel1|scaffold_285906 (1167-1015) | |
| 1-159, gnl|galGal2|chr18 (6858591-6858407) | |
| 1-159, gnl|hg17|chr17 (63144456-63144701) | |
| 1-159, gnl|Hg17|chr17 (63144510-63144668) | |
| 1-159, gnl|hg17|chrX (148953166-148953318) | |
| 1-159, gnl|mm7|chr11 (107298368-107298132) | |
| 1-159, gnl|mm7|chr11 (107298305-107298161) | |
| 1-159, gnl|Mm7|chr11 (107298314-107298156) | |
| 1-159, gnl|monDom2|scaffold_18 (17608632-17608401) | |
| 1-159, gnl|oryCun1|scaffold_205751 (141239-141477) | |
| 1-159, gnl|oryCun1|scaffold_205751 (141304-141448) | |
| 1-159, gnl|panTro1|chr19 (66421444-66421689) | |
| 1-159, gnl|panTro1|chrX (154174756-154174908) | |
| 1-159, gnl|rheMac2|chr16 (63061066-63061311) | |
| 1-159, gnl|rheMac2|chrX (148222073-148222225) | |
| 1-159, gnl|rn3|chr10 (96584001-96583766) | |
| 1-159, gnl|rn3|chr10 (96583939-96583795) | |
| 669-867, gnl|bosTau2|chr19 (43732637-43732835) | |
| 669-867, gnl|canFam2|chr9 (15961884-15961697) | |
| 669-867, gnl|echTel1|scaffold_216917 (2163-2341) | |
| 669-867, gnl|Hg17|chr17 (63153026-63153224) | |
| 669-867, gnl|hg17|chrX (148953838-148954025) | |
| 669-867, gnl|loxAfr1|scaffold_37187 (10515-10702) | |
| 669-867, gnl|mm7|chr11 (107290142-107289956) | |
| 669-867, gnl|Mm7|chr11 (107290154-107289956) | |
| 669-867, gnl|oryCun1|scaffold_205751 (148468-148653) | |
| 669-867, gnl|panTro1|chrX (154175428-154175615) | |
| 669-867, gnl|rheMac2|chrX (148222748-148222935) | |
| 669-867, gnl|rn3|chr10 (96576900-96576714) | |
| 947-1071, gnl|bosTau2|chr19 (43735398-43735522) | |
| 947-1071, gnl|canFam2|chr9 (15957775-15957637) | |
| 947-1071, gnl|canFam2|chr9 (15957755-15957634) | |
| 947-1071, gnl|danRer3|chrUn (151461063-151461202) | |
| 947-1071, gnl|dasNov1|scaffold_13173 (46423-46286) | |
| 947-1071, gnl|dasNov1|scaffold_13173 (46404-46283) | |
| 947-1071, gnl|echTel1|scaffold_216917 (7636-7781) | |
| 947-1071, gnl|echTel1|scaffold_216917 (7663-7784) | |
| 947-1071, gnl|hg17|chr17 (63162459-63162597) | |
| 947-1071, gnl|Hg17|chr17 (63162478-63162602) | |
| 947-1071, gnl|hg17|chrX (148954100-148954221) | |
| 947-1071, gnl|loxAfr1|scaffold_9668 (676-814) | |
| 947-1071, gnl|loxAfr1|scaffold_9668 (696-817) | |
| 947-1071, gnl|mm7|chr11 (107288145-107288016) | |
| 947-1071, gnl|mm7|chr11 (107288138-107288013) | |
| 947-1071, gnl|Mm7|chr11 (107288133-107288009) | |
| 947-1071, gnl|monDom2|scaffold_18 (17588714-17588572) | |
| 947-1071, gnl|monDom2|scaffold_18 (17588692-17588570) | |
| 947-1071, gnl|oryCun1|scaffold_205751 (154732-154870) | |
| 947-1071, gnl|oryCun1|scaffold_205751 (154750-154873) | |
| 947-1071, gnl|panTro1|chr19_random (50821497-50821635) | |
| 947-1071, gnl|panTro1|chrX (154175690-154175811) | |
| 947-1071, gnl|rheMac2|chr16 (63079144-63079281) | |
| 947-1071, gnl|rheMac2|chrX (148223010-148223135) | |
| 947-1071, gnl|rn3|chr10 (96574645-96574516) | |
| 947-1071, gnl|rn3|chr10 (96574638-96574516) | |
| 947-1071, gnl|tetNig1|chr18 (1242004-1242141) | |
| 1227-1419, gnl|bosTau2|chr19 (43737102-43737294) | |
| 1227-1419, gnl|canFam2|chr9 (15955043-15954865) | |
| 1227-1419, gnl|canFam2|chr9 (15954982-15954797) | |
| 1227-1419, gnl|dasNov1|scaffold_13173 (41268-41094) | |
| 1227-1419, gnl|dasNov1|scaffold_13173 (41211-41028) | |
| 1227-1419, gnl|fr1|chrUn (206048111-206047946) | |
| 1227-1419, gnl|hg17|chr17 (63164027-63164203) | |
| 1227-1419, gnl|Hg17|chr17 (63164078-63164270) | |
| 1227-1419, gnl|hg17|chrX (148954386-148954572) | |
| 1227-1419, gnl|loxAfr1|scaffold_9668 (2361-2534) | |
| 1227-1419, gnl|loxAfr1|scaffold_9668 (2421-2600) | |
| 1227-1419, gnl|mm7|chr11 (107284849-107284676) | |
| 1227-1419, gnl|mm7|chr11 (107284790-107284608) | |
| 1227-1419, gnl|Mm7|chr11 (107284796-107284607) | |
| 1227-1419, gnl|monDom2|scaffold_18 (17582619-17582441) | |
| 1227-1419, gnl|monDom2|scaffold_18 (17582559-17582383) | |
| 1227-1419, gnl|oryCun1|scaffold_205751 (156942-157118) | |
| 1227-1419, gnl|oryCun1|scaffold_205751 (157001-157186) | |
| 1227-1419, gnl|panTro1|chr19_random (50823065-50823241) | |
| 1227-1419, gnl|panTro1|chrX (154175977-154176164) | |
| 1227-1419, gnl|rheMac2|chr16 (63080685-63080862) | |
| 1227-1419, gnl|rheMac2|chrX (148223301-148223487) | |
| 1227-1419, gnl|rn3|chr10 (96571401-96571230) | |
| 1227-1419, gnl|rn3|chr10 (96571344-96571162) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cki (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| cly (0.120642) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| cly (0.120642) |