Non-Coding RNA Search

Ss1.1-Lng1-LNG010042B06.5

Sequence:


               
               ACCTGCACTTTCTGGACAAGGCCGCTCAGTGTCCCTGGACAGTGTGCTAGGGGACGTGCG
CTCCCTGCAGCGAGGCCTGGAGTTGACCCAGCGGGAGTTTGTGCGGCAGGATGACTGCGT
GGTGCTCAAGGAGTTCCTGAGGGCTAACTCACCCACCATGGATAAGCTGCTGGCAGACAG
CAAGACGGCTCAGGAAGCCTACGAGTCTGTGGTGGAGTACTTCGGCGAGAACCCCAAGAC
CACGTCCCCCTCCATGTTCTTTTCCCTCTTTAGTCGCTTCATCAAAGCCTATAAGAAAGC
TGAGCAGGAGGTGGAACAGTGGAAGAAAGAAGCAGCTGCCCAGGAGGCGGGCACTGACAC
CGCGGGTAGAGGGGAGCCCTCAGCACCCAAGTCCCCGCCCAAGGTCAGGCGGCAGCAGAT
GGACCTCATTTCTGAGCTGAAACGGAAGCAGCAGAAGGAGCCCCTCATCTACGAGAGTGA
CCGTGATGGGGCCATTGAAGATATCATCACAGATCTGCGGAACCAGCCCTACATCCGCGC
AGATACAGGCCGTCGCAGCGGTCGTCGGCGCCCCCCGGGACCGCCGCTACAGGTCACCTC
TGACATCTCGCTGTAGCCACTGTTTCTGCAGATGGACTCTGTGAGGTCTCTCGGGGTGAG
GGGCAAGCCGGGAGCTCAAGAAAGGTGGTCCTTAGCTCGGCTGGGCCGGGCAGCCTTCTC
CACCGAGGTCCCCAGCCAGGGGCCCACCTCATCTTGCCAAAGGGGGGCAGCATCTGCGGT
CCCTCTCCCCAAATGCTGCTTGCAGCACCACTCTTCCCCCAGTAGCCATACTTCGCCTCA
GCGGGAGCCTGACCTGTAACTTATAAAGTGCAACCTCGCACCCCCTCCAACCCCTACCCG
ACCCCAGCTCCGGAGACTTTCCATGGACCTTATTTTTATACAAGATTAATAAAGACGTTT
CCAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGCACTTTCTGGACAAGGCCGCTCAGTGTCCCTGGACAGTGTGCTAGGGGACGTGCG
CTCCCTGCAGCGAGGCCTGGAGTTGACCCAGCGGGAGTTTGTGCGGCAGGATGACTGCGT
GGTGCTCAAGGAGTTCCTGAGGGCTAACTCACCCACCATGGATAAGCTGCTGGCAGACAG
CAAGACGGCTCAGGAAGCCTACGAGTCTGTGGTGGAGTACTTCGGCGAGAACCCCAAGAC
CACGTCCCCCTCCATGTTCTTTTCCCTCTTTAGTCGCTTCATCAAAGCCTATAAGAAAGC
TGAGCAGGAGGTGGAACAGTGGAAGAAAGAAGCAGCTGCCCAGGAGGCGGGCACTGACAC
CGCGGGTAGAGGGGAGCCCTCAGCACCCAAGTCCCCGCCCAAGGTCAGGCGGCAGCAGAT
GGACCTCATTTCTGAGCTGAAACGGAAGCAGCAGAAGGAGCCCCTCATCTACGAGAGTGA
CCGTGATGGGGCCATTGAAGATATCATCACAGATCTGCGGAACCAGCCCTACATCCGCGC
AGATACAGGCCGTCGCAGCGGTCGTCGGCGCCCCCCGGGACCGCCGCTACAGGTCACCTC
TGACATCTCGCTGTAGCCACTGTTTCTGCAGATGGACTCTGTGAGGTCTCTCGGGGTGAG
GGGCAAGCCGGGAGCTCAAGAAAGGTGGTCCTTAGCTCGGCTGGGCCGGGCAGCCTTCTC
CACCGAGGTCCCCAGCCAGGGGCCCACCTCATCTTGCCAAAGGGGGGCAGCATCTGCGGT
CCCTCTCCCCAAATGCTGCTTGCAGCACCACTCTTCCCCCAGTAGCCATACTTCGCCTCA
GCGGGAGCCTGACCTGTAACTTATAAAGTGCAACCTCGCACCCCCTCCAACCCCTACCCG
ACCCCAGCTCCGGAGACTTTCCATGGACCTTATTTTTATACAAGATTAATAAAGACGTTT
CCAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34782919|gb|AAH09000.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34782919|gb|AAH09000.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-194, + strand, RNAz p=0.690642
               

               
               737-831, + strand, RNAz p=0.977702

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-194, + strand, RNAz p=0.690642
               

               
               737-831, + strand, RNAz p=0.977702

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC021906, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC021906, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-194, gnl|bosTau2|chr19 (37129092-37128920)
               

               
               22-194, gnl|Hg17|chr17 (40678395-40678567)
               

               
               22-194, gnl|Mm7|chr11 (103305718-103305890)
               


               
               510-968, gnl|bosTau2|chr19 (37127415-37126928)
               

               
               510-968, gnl|Hg17|chr17 (40680014-40680470)
               

               
               510-968, gnl|Mm7|chr11 (103307521-103307942)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-194, gnl|bosTau2|chr19 (37129092-37128920)
               

               
               22-194, gnl|Hg17|chr17 (40678395-40678567)
               

               
               22-194, gnl|Mm7|chr11 (103305718-103305890)
               


               
               510-968, gnl|bosTau2|chr19 (37127415-37126928)
               

               
               510-968, gnl|Hg17|chr17 (40680014-40680470)
               

               
               510-968, gnl|Mm7|chr11 (103307521-103307942)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               med (0.348756)
               

               
               cbl (0.344392)
               

               
               lnt (0.284616)
               

               
               nbm (0.198649)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nca (0.136874)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)
               

               
               cbl (0.344392)
               

               
               lnt (0.284616)
               

               
               nbm (0.198649)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nca (0.136874)

	77-194, + strand, RNAz p=0.690642
	737-831, + strand, RNAz p=0.977702

	22-194, gnl\|bosTau2\|chr19 (37129092-37128920)
	22-194, gnl\|Hg17\|chr17 (40678395-40678567)
	22-194, gnl\|Mm7\|chr11 (103305718-103305890)

	510-968, gnl\|bosTau2\|chr19 (37127415-37126928)
	510-968, gnl\|Hg17\|chr17 (40680014-40680470)
	510-968, gnl\|Mm7\|chr11 (103307521-103307942)

	med (0.348756)
	cbl (0.344392)
	lnt (0.284616)
	nbm (0.198649)
	csp (0.161186)
	cag (0.151194)
	nca (0.136874)