Non-Coding RNA Search

Ss1.1-Lng1-LNG010042B11.5

Sequence:


               
               TTACTTCCCGTCTGTCAGAGTCGGTGTGTAACTCGGTGGTCCTGAAGTCTAGGAGTCGTG
TACATTTTGCTTTCCCTGGCTCTCGAGCGCTTCCCCCCTAGCGGGTGGGAGTGCAGGGAC
GGAAGCGCGAGATGAGCACCATGTTCGCGGACACACTGCTCATCGTTTTTATCTCCGTGT
GCACGGCTCTGCTCGCCGAGGGTATAACTTGGGTCCTGGTTTACAGGACAGACAAGTACA
AGAGACTGAAGGCAGAAGTGGAAAAACAGAGTAAAAAATTGGAAAAGAAGAAAGAAACAA
TAACGGAGTCAGCTGGTCGACAACAAAAAAAGAAAATAGAGAGGCAAGAAGAAAAACTGA
AGAATAACAATAGAGATCTGTCAATGGTTCGAATGAAATCCATGTTTGCAATTGGCTTTT
GTTTTACTGCCCTGATGGGAATGTTTAATTCCATATTTGATGGTAGAGTGGTGGCAAAGC
TCCCTTTCACCCCCCTTTCCTACATCCAAGGACTGTCTCATAGAAATCTGCTGGGAGATG
ACACCACAGACTGTTCCTTCATCTTCCTGTATATTCTCTGTACCATGTCAATTCGACAGA
ACATCCAGAAGATTCTTGGCCTCGCCCCTTCACGAGCTGCCACCAAGCAGGCAGGTGGAT
TTCTTGGCCCTCCACCTCCTTCTGGGAAGTTCTCTTGAAATCAAGAAGAACCCTGAATTC
CTGTCATTCTTTTTAGACATTCAAATCAGACTGGCAACTATTTTGTAGCAAGAGCCACGG
GCAGCCTTAGCACTTGGGCCACTTTCTAATTTTATTTCTGGGCTTTTTGGGTATGATTCA
CATGAGAATGGCACCCAACAAACATGATAGTGCTTTTGGTCACAGATTAATATTTTTAAA
CAAATGTGTTGATTGGATAAGCTCAGGTGATGTTTATGTAATGAGAAAAAATTTCTTATG
TTGCTTACACAAATATTCTGTGGGACTGACTTTCAGGTATGTGCTGTGTGCCATGTACCA
TGGAACTTGGCTTTTCGAGAGCATTTAGAGATCTGGAAGAAAAATTTAGTTTATGTAACT
TAATTGGAACTATTTGTTGTTGTTTTTTTCAAGTCAAATATATGACCTAAGATCAATAAA
GAGGCCAAAATTTTAGCTATTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACTTCCCGTCTGTCAGAGTCGGTGTGTAACTCGGTGGTCCTGAAGTCTAGGAGTCGTG
TACATTTTGCTTTCCCTGGCTCTCGAGCGCTTCCCCCCTAGCGGGTGGGAGTGCAGGGAC
GGAAGCGCGAGATGAGCACCATGTTCGCGGACACACTGCTCATCGTTTTTATCTCCGTGT
GCACGGCTCTGCTCGCCGAGGGTATAACTTGGGTCCTGGTTTACAGGACAGACAAGTACA
AGAGACTGAAGGCAGAAGTGGAAAAACAGAGTAAAAAATTGGAAAAGAAGAAAGAAACAA
TAACGGAGTCAGCTGGTCGACAACAAAAAAAGAAAATAGAGAGGCAAGAAGAAAAACTGA
AGAATAACAATAGAGATCTGTCAATGGTTCGAATGAAATCCATGTTTGCAATTGGCTTTT
GTTTTACTGCCCTGATGGGAATGTTTAATTCCATATTTGATGGTAGAGTGGTGGCAAAGC
TCCCTTTCACCCCCCTTTCCTACATCCAAGGACTGTCTCATAGAAATCTGCTGGGAGATG
ACACCACAGACTGTTCCTTCATCTTCCTGTATATTCTCTGTACCATGTCAATTCGACAGA
ACATCCAGAAGATTCTTGGCCTCGCCCCTTCACGAGCTGCCACCAAGCAGGCAGGTGGAT
TTCTTGGCCCTCCACCTCCTTCTGGGAAGTTCTCTTGAAATCAAGAAGAACCCTGAATTC
CTGTCATTCTTTTTAGACATTCAAATCAGACTGGCAACTATTTTGTAGCAAGAGCCACGG
GCAGCCTTAGCACTTGGGCCACTTTCTAATTTTATTTCTGGGCTTTTTGGGTATGATTCA
CATGAGAATGGCACCCAACAAACATGATAGTGCTTTTGGTCACAGATTAATATTTTTAAA
CAAATGTGTTGATTGGATAAGCTCAGGTGATGTTTATGTAATGAGAAAAAATTTCTTATG
TTGCTTACACAAATATTCTGTGGGACTGACTTTCAGGTATGTGCTGTGTGCCATGTACCA
TGGAACTTGGCTTTTCGAGAGCATTTAGAGATCTGGAAGAAAAATTTAGTTTATGTAACT
TAATTGGAACTATTTGTTGTTGTTTTTTTCAAGTCAAATATATGACCTAAGATCAATAAA
GAGGCCAAAATTTTAGCTATTTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5I0H4_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5I0H4_RAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               81-732, - strand, RNAz p=0.907476
               

               
               595-713, - strand, RNAz p=0.844962

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-732, - strand, RNAz p=0.907476
               

               
               595-713, - strand, RNAz p=0.844962

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               4-203, gnl|bosTau2|chr3 (3813758-3813962)
               

               
               4-203, gnl|Hg17|chr1 (162469776-162469575)
               

               
               4-203, gnl|Mm7|chr1 (167283926-167284121)
               


               
               384-1164, gnl|bosTau2|chr5 (55660301-55659515)
               

               
               384-1164, gnl|Hg17|chr1 (162429099-162428440)
               

               
               384-1164, gnl|Mm7|chr1 (167301051-167305856)
               


               
               556-848, gnl|bosTau2|chr10 (66380068-66380365)
               

               
               556-848, gnl|Hg17|chr1 (162429019-162428773)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-203, gnl|bosTau2|chr3 (3813758-3813962)
               

               
               4-203, gnl|Hg17|chr1 (162469776-162469575)
               

               
               4-203, gnl|Mm7|chr1 (167283926-167284121)
               


               
               384-1164, gnl|bosTau2|chr5 (55660301-55659515)
               

               
               384-1164, gnl|Hg17|chr1 (162429099-162428440)
               

               
               384-1164, gnl|Mm7|chr1 (167301051-167305856)
               


               
               556-848, gnl|bosTau2|chr10 (66380068-66380365)
               

               
               556-848, gnl|Hg17|chr1 (162429019-162428773)

Expressed library(ies): 49 entry(ies)

More info

Expressed library(ies): 49 entry(ies)

Help | Less info


               
               kid (0.778412)
               

               
               fat (0.737137)
               

               
               mga (0.64082)
               

               
               col (0.585023)
               

               
               spc (0.566829)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               fco (0.471624)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               ssp (0.406559)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.778412)
               

               
               fat (0.737137)
               

               
               mga (0.64082)
               

               
               col (0.585023)
               

               
               spc (0.566829)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               fco (0.471624)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               ssp (0.406559)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	81-732, - strand, RNAz p=0.907476
	595-713, - strand, RNAz p=0.844962

	4-203, gnl\|bosTau2\|chr3 (3813758-3813962)
	4-203, gnl\|Hg17\|chr1 (162469776-162469575)
	4-203, gnl\|Mm7\|chr1 (167283926-167284121)

	384-1164, gnl\|bosTau2\|chr5 (55660301-55659515)
	384-1164, gnl\|Hg17\|chr1 (162429099-162428440)
	384-1164, gnl\|Mm7\|chr1 (167301051-167305856)

	556-848, gnl\|bosTau2\|chr10 (66380068-66380365)
	556-848, gnl\|Hg17\|chr1 (162429019-162428773)

	kid (0.778412)
	fat (0.737137)
	mga (0.64082)
	col (0.585023)
	spc (0.566829)
	pro (0.512033)
	sug (0.509165)
	fco (0.471624)
	lun (0.451467)
	csk (0.422238)
	ssp (0.406559)
	ret (0.3862)
	elu (0.385356)
	thg (0.380373)
	tra (0.369276)
	sag (0.36543)
	sto (0.359648)
	rec (0.346141)
	vin (0.332557)
	cki (0.330469)
	ski (0.29347)
	cte (0.29274)
	fce (0.271592)
	lyg (0.266205)
	cbe (0.239234)
	tes (0.207814)
	fli (0.202881)
	jej (0.197844)
	aor (0.195274)
	nlu (0.191681)
	fty (0.17584)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	cje (0.165235)
	nco (0.161734)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)
	ldo (0.0970026)